data_6OGL # _model_server_result.job_id OqWV40-RqT8JncaaivqIYA _model_server_result.datetime_utc '2024-11-28 22:15:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ogl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 6OGL # _exptl.entry_id 6OGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 688.83 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(4-fluorophenyl)-3-hydroxybutan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OGL _cell.length_a 62.984 _cell.length_b 62.984 _cell.length_c 81.893 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 94.476 -54.545744 27.297667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H41 F N4 O7 S2' _chem_comp.formula_weight 688.83 _chem_comp.id JDV _chem_comp.mon_nstd_flag . _chem_comp.name '(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(4-fluorophenyl)-3-hydroxybutan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBO CBG JDV sing 195 n n CBO CBN JDV sing 196 n n CBG NBF JDV sing 197 n n CBG CBN JDV sing 198 n n NBF CBD JDV sing 199 n n CBD NBE JDV doub 200 n y CBD SBC JDV sing 201 n y NBE CAZ JDV sing 202 n y SBC CAY JDV sing 203 n y CAZ CBA JDV doub 204 n y CAZ CAY JDV sing 205 n y CBA CBB JDV sing 206 n y CAY CAX JDV doub 207 n y CBB CAS JDV doub 208 n y CAX CAS JDV sing 209 n y CAS SAR JDV sing 210 n n SAR OAU JDV doub 211 n n SAR OAV JDV doub 212 n n SAR NAQ JDV sing 213 n n CBQ NAQ JDV sing 214 n n CBQ CBR JDV sing 215 n n NAQ CAP JDV sing 216 n n CAP CAT JDV sing 217 n n CBT CBR JDV sing 218 n n CBR CBS JDV sing 219 n n CAW CAO JDV sing 220 n n CAW CBH JDV sing 221 n n CAT OBP JDV sing 222 n n CAT CAO JDV sing 223 n n CBM CBH JDV doub 224 n y CBM CBL JDV sing 225 n y CAO NAN JDV sing 226 n n CBH CBI JDV sing 227 n y CBL CBK JDV doub 228 n y CBI CBJ JDV doub 229 n y CBK CBJ JDV sing 230 n y CBK FBU JDV sing 231 n n NAN CAL JDV sing 232 n n OAM CAL JDV doub 233 n n CAL OAK JDV sing 234 n n OAK CAF JDV sing 235 n n CAF CAD JDV sing 236 n n CAF CAG JDV sing 237 n n CAC CAD JDV sing 238 n n CAC OAB JDV sing 239 n n CAD CAE JDV sing 240 n n CAG CAJ JDV sing 241 n n CAG CAH JDV sing 242 n n OAB CAA JDV sing 243 n n CAJ OAI JDV sing 244 n n CAE CAH JDV sing 245 n n CAE CAA JDV sing 246 n n CAA OAI JDV sing 247 n n CAA HAA JDV sing 248 n n CAC HAD JDV sing 249 n n CAC HAC JDV sing 250 n n CAD HAE JDV sing 251 n n CAE HAF JDV sing 252 n n CAF HAG JDV sing 253 n n CAG HAH JDV sing 254 n n CAH HAI JDV sing 255 n n CAH HAJ JDV sing 256 n n CAJ HAK JDV sing 257 n n CAJ HAL JDV sing 258 n n CAO HAO JDV sing 259 n n CAP HAP JDV sing 260 n n CAP HAQ JDV sing 261 n n CAT HAT JDV sing 262 n n CAW HAW JDV sing 263 n n CAW HAX JDV sing 264 n n CAX HAY JDV sing 265 n n CBA HBA JDV sing 266 n n CBB HBB JDV sing 267 n n CBG HBG JDV sing 268 n n CBI HBI JDV sing 269 n n CBJ HBJ JDV sing 270 n n CBL HBL JDV sing 271 n n CBM HBM JDV sing 272 n n CBN HBO JDV sing 273 n n CBN HBN JDV sing 274 n n CBO HBQ JDV sing 275 n n CBO HBP JDV sing 276 n n CBQ HBR JDV sing 277 n n CBQ HBS JDV sing 278 n n CBR HBT JDV sing 279 n n CBS HBV JDV sing 280 n n CBS HBW JDV sing 281 n n CBS HBU JDV sing 282 n n CBT HBZ JDV sing 283 n n CBT HBX JDV sing 284 n n CBT HBY JDV sing 285 n n NAN HAN JDV sing 286 n n NBF HBF JDV sing 287 n n OBP HB0 JDV sing 288 n n # _atom_sites.entry_id 6OGL _atom_sites.fract_transf_matrix[1][1] 0.015877 _atom_sites.fract_transf_matrix[1][2] 0.009167 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 101 1 GOL GOL . C 3 EDO A 1 102 2 EDO EDO . D 4 JDV A 1 103 1 JDV DRG . E 5 HOH A 1 201 75 HOH HOH . E 5 HOH A 2 202 45 HOH HOH . E 5 HOH A 3 203 41 HOH HOH . E 5 HOH A 4 204 54 HOH HOH . E 5 HOH A 5 205 4 HOH HOH . E 5 HOH A 6 206 28 HOH HOH . E 5 HOH A 7 207 42 HOH HOH . E 5 HOH A 8 208 22 HOH HOH . E 5 HOH A 9 209 43 HOH HOH . E 5 HOH A 10 210 78 HOH HOH . E 5 HOH A 11 211 48 HOH HOH . E 5 HOH A 12 212 7 HOH HOH . E 5 HOH A 13 213 23 HOH HOH . E 5 HOH A 14 214 53 HOH HOH . E 5 HOH A 15 215 1 HOH HOH . E 5 HOH A 16 216 49 HOH HOH . E 5 HOH A 17 217 8 HOH HOH . E 5 HOH A 18 218 17 HOH HOH . E 5 HOH A 19 219 65 HOH HOH . E 5 HOH A 20 220 81 HOH HOH . E 5 HOH A 21 221 25 HOH HOH . E 5 HOH A 22 222 38 HOH HOH . E 5 HOH A 23 223 5 HOH HOH . E 5 HOH A 24 224 2 HOH HOH . E 5 HOH A 25 225 61 HOH HOH . E 5 HOH A 26 226 32 HOH HOH . E 5 HOH A 27 227 20 HOH HOH . E 5 HOH A 28 228 71 HOH HOH . E 5 HOH A 29 229 16 HOH HOH . E 5 HOH A 30 230 73 HOH HOH . E 5 HOH A 31 231 67 HOH HOH . E 5 HOH A 32 232 72 HOH HOH . E 5 HOH A 33 233 29 HOH HOH . E 5 HOH A 34 234 36 HOH HOH . E 5 HOH A 35 235 79 HOH HOH . E 5 HOH A 36 236 62 HOH HOH . E 5 HOH A 37 237 46 HOH HOH . E 5 HOH A 38 238 37 HOH HOH . E 5 HOH A 39 239 27 HOH HOH . E 5 HOH A 40 240 39 HOH HOH . E 5 HOH A 41 241 52 HOH HOH . E 5 HOH A 42 242 3 HOH HOH . E 5 HOH A 43 243 11 HOH HOH . E 5 HOH A 44 244 26 HOH HOH . E 5 HOH A 45 245 12 HOH HOH . E 5 HOH A 46 246 9 HOH HOH . E 5 HOH A 47 247 10 HOH HOH . E 5 HOH A 48 248 69 HOH HOH . E 5 HOH A 49 249 33 HOH HOH . E 5 HOH A 50 250 30 HOH HOH . E 5 HOH A 51 251 64 HOH HOH . E 5 HOH A 52 252 15 HOH HOH . E 5 HOH A 53 253 82 HOH HOH . E 5 HOH A 54 254 50 HOH HOH . E 5 HOH A 55 255 40 HOH HOH . E 5 HOH A 56 256 76 HOH HOH . E 5 HOH A 57 257 60 HOH HOH . E 5 HOH A 58 258 6 HOH HOH . E 5 HOH A 59 259 77 HOH HOH . E 5 HOH A 60 260 19 HOH HOH . E 5 HOH A 61 261 47 HOH HOH . E 5 HOH A 62 262 56 HOH HOH . E 5 HOH A 63 263 59 HOH HOH . E 5 HOH A 64 264 21 HOH HOH . E 5 HOH A 65 265 35 HOH HOH . E 5 HOH A 66 266 80 HOH HOH . E 5 HOH A 67 267 57 HOH HOH . E 5 HOH A 68 268 24 HOH HOH . E 5 HOH A 69 269 14 HOH HOH . E 5 HOH A 70 270 74 HOH HOH . E 5 HOH A 71 271 58 HOH HOH . E 5 HOH A 72 272 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA JDV . . . D 4 70.346 18.017 21.203 0.5 10.28 ? CAA JDV 103 A 1 HETATM 2 C CAC JDV . . . D 4 69.389 18.659 19.083 0.5 10.45 ? CAC JDV 103 A 1 HETATM 3 C CAD JDV . . . D 4 69.276 17.14 19.217 0.5 10.26 ? CAD JDV 103 A 1 HETATM 4 C CAE JDV . . . D 4 69.43 16.829 20.787 0.5 9.21 ? CAE JDV 103 A 1 HETATM 5 C CAF JDV . . . D 4 70.432 16.377 18.493 0.5 10.01 ? CAF JDV 103 A 1 HETATM 6 C CAG JDV . . . D 4 71.232 15.979 19.674 0.5 10.67 ? CAG JDV 103 A 1 HETATM 7 C CAH JDV . . . D 4 70.165 15.628 20.711 0.5 10.69 ? CAH JDV 103 A 1 HETATM 8 C CAJ JDV . . . D 4 72.217 17.034 20.243 0.5 10.06 ? CAJ JDV 103 A 1 HETATM 9 C CAL JDV . . . D 4 71.125 16.9 16.294 0.5 10.21 ? CAL JDV 103 A 1 HETATM 10 C CAO JDV . . . D 4 71.71 17.891 14.066 0.5 9.39 ? CAO JDV 103 A 1 HETATM 11 C CAP JDV . . . D 4 73.252 17.953 12.121 0.5 9.08 ? CAP JDV 103 A 1 HETATM 12 C CAS JDV . . . D 4 72.431 16.062 9.303 0.5 10.25 ? CAS JDV 103 A 1 HETATM 13 C CAT JDV . . . D 4 73.179 18.196 13.617 0.5 8.87 ? CAT JDV 103 A 1 HETATM 14 C CAW JDV . . . D 4 70.68 18.963 13.64 0.5 10.7 ? CAW JDV 103 A 1 HETATM 15 C CAX JDV . . . D 4 73.038 14.955 8.691 0.5 10.89 ? CAX JDV 103 A 1 HETATM 16 C CAY JDV . . . D 4 73.394 15.138 7.447 0.5 12.03 ? CAY JDV 103 A 1 HETATM 17 C CAZ JDV . . . D 4 73.285 16.338 6.822 0.5 10.99 ? CAZ JDV 103 A 1 HETATM 18 C CBA JDV . . . D 4 72.751 17.371 7.373 0.5 9.96 ? CBA JDV 103 A 1 HETATM 19 C CBB JDV . . . D 4 72.293 17.293 8.66 0.5 9.91 ? CBB JDV 103 A 1 HETATM 20 C CBD JDV . . . D 4 74.281 15.213 5.157 0.5 14.49 ? CBD JDV 103 A 1 HETATM 21 C CBG JDV . . . D 4 75.453 13.761 3.532 0.5 18.08 ? CBG JDV 103 A 1 HETATM 22 C CBH JDV . . . D 4 69.467 18.535 14.144 0.5 13.2 ? CBH JDV 103 A 1 HETATM 23 C CBI JDV . . . D 4 68.815 17.472 13.538 0.5 14.19 ? CBI JDV 103 A 1 HETATM 24 C CBJ JDV . . . D 4 67.609 17 14.041 0.5 16.09 ? CBJ JDV 103 A 1 HETATM 25 C CBK JDV . . . D 4 67.057 17.544 15.181 0.5 15.45 ? CBK JDV 103 A 1 HETATM 26 C CBL JDV . . . D 4 67.71 18.589 15.803 0.5 13.87 ? CBL JDV 103 A 1 HETATM 27 C CBM JDV . . . D 4 68.91 19.085 15.267 0.5 13.29 ? CBM JDV 103 A 1 HETATM 28 C CBN JDV . . . D 4 76.781 13.393 4.246 0.5 18.21 ? CBN JDV 103 A 1 HETATM 29 C CBO JDV . . . D 4 76.837 13.95 2.893 0.5 19.28 ? CBO JDV 103 A 1 HETATM 30 C CBQ JDV . . . D 4 74.521 16.072 11.638 0.5 11.98 ? CBQ JDV 103 A 1 HETATM 31 C CBR JDV . . . D 4 75.224 15.343 12.826 0.5 13.77 ? CBR JDV 103 A 1 HETATM 32 C CBS JDV . . . D 4 76.521 14.721 12.356 0.5 13.29 ? CBS JDV 103 A 1 HETATM 33 C CBT JDV . . . D 4 75.592 16.311 13.834 0.5 16.48 ? CBT JDV 103 A 1 HETATM 34 F FBU JDV . . . D 4 65.847 17.047 15.706 0.5 19.52 ? FBU JDV 103 A 1 HETATM 35 N NAN JDV . . . D 4 71.601 17.849 15.535 0.5 9.78 ? NAN JDV 103 A 1 HETATM 36 N NAQ JDV . . . D 4 73.21 16.509 11.953 0.5 9.87 ? NAQ JDV 103 A 1 HETATM 37 N NBE JDV . . . D 4 73.801 16.369 5.627 0.5 13.94 ? NBE JDV 103 A 1 HETATM 38 N NBF JDV . . . D 4 74.802 15.045 3.934 0.5 16.27 ? NBF JDV 103 A 1 HETATM 39 O OAB JDV . . . D 4 70.283 19.066 20.125 0.5 10.33 ? OAB JDV 103 A 1 HETATM 40 O OAI JDV . . . D 4 71.738 17.617 21.418 0.5 10.6 ? OAI JDV 103 A 1 HETATM 41 O OAK JDV . . . D 4 71.134 17.231 17.596 0.5 10.36 ? OAK JDV 103 A 1 HETATM 42 O OAM JDV . . . D 4 70.835 15.763 15.889 0.5 9.22 ? OAM JDV 103 A 1 HETATM 43 O OAU JDV . . . D 4 70.694 16.77 11.221 0.5 10.82 ? OAU JDV 103 A 1 HETATM 44 O OAV JDV . . . D 4 72.004 14.499 11.316 0.5 10.41 ? OAV JDV 103 A 1 HETATM 45 O OBP JDV . . . D 4 73.457 19.577 13.826 0.5 8.7 ? OBP JDV 103 A 1 HETATM 46 S SAR JDV . . . D 4 71.937 15.931 10.923 0.5 10.55 ? SAR JDV 103 A 1 HETATM 47 S SBC JDV . . . D 4 74.192 14.005 6.352 0.5 14.22 ? SBC JDV 103 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #