data_6OGQ # _model_server_result.job_id -ZZFkj4GMj7IPtIgYieuUQ _model_server_result.datetime_utc '2024-10-10 03:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ogq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6OGQ # _exptl.entry_id 6OGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OGQ _cell.length_a 62.823 _cell.length_b 62.823 _cell.length_c 82.154 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 27.384667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6OGQ _atom_sites.fract_transf_matrix[1][1] 0.015918 _atom_sites.fract_transf_matrix[1][2] 0.00919 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 101 101 GOL GOL . C 3 PEG A 1 102 201 PEG PEG . D 4 JDV A 1 103 101 JDV DRG . E 5 SO4 A 1 104 1 SO4 SO4 . F 6 HOH A 1 201 38 HOH HOH . F 6 HOH A 2 202 2 HOH HOH . F 6 HOH A 3 203 31 HOH HOH . F 6 HOH A 4 204 41 HOH HOH . F 6 HOH A 5 205 8 HOH HOH . F 6 HOH A 6 206 45 HOH HOH . F 6 HOH A 7 207 14 HOH HOH . F 6 HOH A 8 208 44 HOH HOH . F 6 HOH A 9 209 5 HOH HOH . F 6 HOH A 10 210 27 HOH HOH . F 6 HOH A 11 211 37 HOH HOH . F 6 HOH A 12 212 17 HOH HOH . F 6 HOH A 13 213 10 HOH HOH . F 6 HOH A 14 214 6 HOH HOH . F 6 HOH A 15 215 18 HOH HOH . F 6 HOH A 16 216 25 HOH HOH . F 6 HOH A 17 217 4 HOH HOH . F 6 HOH A 18 218 1 HOH HOH . F 6 HOH A 19 219 3 HOH HOH . F 6 HOH A 20 220 26 HOH HOH . F 6 HOH A 21 221 30 HOH HOH . F 6 HOH A 22 222 36 HOH HOH . F 6 HOH A 23 223 19 HOH HOH . F 6 HOH A 24 224 33 HOH HOH . F 6 HOH A 25 225 12 HOH HOH . F 6 HOH A 26 226 24 HOH HOH . F 6 HOH A 27 227 13 HOH HOH . F 6 HOH A 28 228 15 HOH HOH . F 6 HOH A 29 229 29 HOH HOH . F 6 HOH A 30 230 28 HOH HOH . F 6 HOH A 31 231 43 HOH HOH . F 6 HOH A 32 232 35 HOH HOH . F 6 HOH A 33 233 20 HOH HOH . F 6 HOH A 34 234 22 HOH HOH . F 6 HOH A 35 235 23 HOH HOH . F 6 HOH A 36 236 39 HOH HOH . F 6 HOH A 37 237 9 HOH HOH . F 6 HOH A 38 238 42 HOH HOH . F 6 HOH A 39 239 34 HOH HOH . F 6 HOH A 40 240 11 HOH HOH . F 6 HOH A 41 241 32 HOH HOH . F 6 HOH A 42 242 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -0.25 -31.696 -2.819 1 27.08 ? C1 GOL 101 A 1 HETATM 2 O O1 GOL . . . B 2 1.137 -31.636 -3.116 1 20.26 ? O1 GOL 101 A 1 HETATM 3 C C2 GOL . . . B 2 -0.91 -32.896 -3.439 1 32.37 ? C2 GOL 101 A 1 HETATM 4 O O2 GOL . . . B 2 -0.294 -34.085 -2.955 1 37.9 ? O2 GOL 101 A 1 HETATM 5 C C3 GOL . . . B 2 -2.395 -32.944 -3.151 1 34.62 ? C3 GOL 101 A 1 HETATM 6 O O3 GOL . . . B 2 -2.925 -34.247 -3.374 1 35.99 ? O3 GOL 101 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #