data_6OGS # _model_server_result.job_id tJgSmp2n6fkwK06H7fJDVw _model_server_result.datetime_utc '2024-10-10 01:20:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ogs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 6OGS # _exptl.entry_id 6OGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OGS _cell.length_a 62.768 _cell.length_b 62.768 _cell.length_c 82.139 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 27.379667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6OGS _atom_sites.fract_transf_matrix[1][1] 0.015932 _atom_sites.fract_transf_matrix[1][2] 0.009198 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 101 101 PEG PEG . C 3 GOL A 1 102 201 GOL GOL . D 4 JDY A 1 103 101 JDY DRG . E 5 SO4 A 1 104 1 SO4 SO4 . F 6 HOH A 1 201 64 HOH HOH . F 6 HOH A 2 202 23 HOH HOH . F 6 HOH A 3 203 31 HOH HOH . F 6 HOH A 4 204 17 HOH HOH . F 6 HOH A 5 205 30 HOH HOH . F 6 HOH A 6 206 34 HOH HOH . F 6 HOH A 7 207 43 HOH HOH . F 6 HOH A 8 208 19 HOH HOH . F 6 HOH A 9 209 18 HOH HOH . F 6 HOH A 10 210 4 HOH HOH . F 6 HOH A 11 211 10 HOH HOH . F 6 HOH A 12 212 62 HOH HOH . F 6 HOH A 13 213 46 HOH HOH . F 6 HOH A 14 214 33 HOH HOH . F 6 HOH A 15 215 3 HOH HOH . F 6 HOH A 16 216 21 HOH HOH . F 6 HOH A 17 217 28 HOH HOH . F 6 HOH A 18 218 14 HOH HOH . F 6 HOH A 19 219 20 HOH HOH . F 6 HOH A 20 220 24 HOH HOH . F 6 HOH A 21 221 35 HOH HOH . F 6 HOH A 22 222 15 HOH HOH . F 6 HOH A 23 223 25 HOH HOH . F 6 HOH A 24 224 41 HOH HOH . F 6 HOH A 25 225 16 HOH HOH . F 6 HOH A 26 226 37 HOH HOH . F 6 HOH A 27 227 65 HOH HOH . F 6 HOH A 28 228 42 HOH HOH . F 6 HOH A 29 229 63 HOH HOH . F 6 HOH A 30 230 59 HOH HOH . F 6 HOH A 31 231 12 HOH HOH . F 6 HOH A 32 232 11 HOH HOH . F 6 HOH A 33 233 26 HOH HOH . F 6 HOH A 34 234 9 HOH HOH . F 6 HOH A 35 235 7 HOH HOH . F 6 HOH A 36 236 8 HOH HOH . F 6 HOH A 37 237 2 HOH HOH . F 6 HOH A 38 238 13 HOH HOH . F 6 HOH A 39 239 61 HOH HOH . F 6 HOH A 40 240 58 HOH HOH . F 6 HOH A 41 241 32 HOH HOH . F 6 HOH A 42 242 5 HOH HOH . F 6 HOH A 43 243 56 HOH HOH . F 6 HOH A 44 244 44 HOH HOH . F 6 HOH A 45 245 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -0.271 -31.605 -2.941 1 24.15 ? C1 GOL 102 A 1 HETATM 2 O O1 GOL . . . C 3 1.134 -31.58 -3.104 1 18.1 ? O1 GOL 102 A 1 HETATM 3 C C2 GOL . . . C 3 -0.873 -32.913 -3.37 1 30.19 ? C2 GOL 102 A 1 HETATM 4 O O2 GOL . . . C 3 -0.278 -33.995 -2.663 1 37.85 ? O2 GOL 102 A 1 HETATM 5 C C3 GOL . . . C 3 -2.366 -32.924 -3.121 1 32.31 ? C3 GOL 102 A 1 HETATM 6 O O3 GOL . . . C 3 -2.935 -34.198 -3.404 1 35.82 ? O3 GOL 102 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #