data_6OGT
#
_model_server_result.job_id            j-3fNI8RXavy4LwlI3HCBQ 
_model_server_result.datetime_utc      '2024-10-10 01:25:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ogt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    6OGT 
#
_exptl.entry_id    6OGT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6OGT 
_cell.length_a            63.071 
_cell.length_b            63.071 
_cell.length_c            82.196 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OGT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 27.398667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     6OGT 
_atom_sites.fract_transf_matrix[1][1]    0.015855 
_atom_sites.fract_transf_matrix[1][2]    0.009154 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 101 1 GOL GOL . 
C 3 JDY A 1 102 1 JDY DRG . 
D 4 EDO A 1 103 1 EDO EDO . 
E 5 HOH A 1 201 75 HOH HOH . 
E 5 HOH A 2 202 4 HOH HOH . 
E 5 HOH A 3 203 26 HOH HOH . 
E 5 HOH A 4 204 36 HOH HOH . 
E 5 HOH A 5 205 7 HOH HOH . 
E 5 HOH A 6 206 41 HOH HOH . 
E 5 HOH A 7 207 43 HOH HOH . 
E 5 HOH A 8 208 34 HOH HOH . 
E 5 HOH A 9 209 23 HOH HOH . 
E 5 HOH A 10 210 73 HOH HOH . 
E 5 HOH A 11 211 2 HOH HOH . 
E 5 HOH A 12 212 64 HOH HOH . 
E 5 HOH A 13 213 40 HOH HOH . 
E 5 HOH A 14 214 65 HOH HOH . 
E 5 HOH A 15 215 66 HOH HOH . 
E 5 HOH A 16 216 17 HOH HOH . 
E 5 HOH A 17 217 39 HOH HOH . 
E 5 HOH A 18 218 71 HOH HOH . 
E 5 HOH A 19 219 10 HOH HOH . 
E 5 HOH A 20 220 6 HOH HOH . 
E 5 HOH A 21 221 19 HOH HOH . 
E 5 HOH A 22 222 5 HOH HOH . 
E 5 HOH A 23 223 1 HOH HOH . 
E 5 HOH A 24 224 47 HOH HOH . 
E 5 HOH A 25 225 68 HOH HOH . 
E 5 HOH A 26 226 76 HOH HOH . 
E 5 HOH A 27 227 25 HOH HOH . 
E 5 HOH A 28 228 21 HOH HOH . 
E 5 HOH A 29 229 62 HOH HOH . 
E 5 HOH A 30 230 16 HOH HOH . 
E 5 HOH A 31 231 31 HOH HOH . 
E 5 HOH A 32 232 30 HOH HOH . 
E 5 HOH A 33 233 27 HOH HOH . 
E 5 HOH A 34 234 37 HOH HOH . 
E 5 HOH A 35 235 46 HOH HOH . 
E 5 HOH A 36 236 45 HOH HOH . 
E 5 HOH A 37 237 12 HOH HOH . 
E 5 HOH A 38 238 3 HOH HOH . 
E 5 HOH A 39 239 50 HOH HOH . 
E 5 HOH A 40 240 32 HOH HOH . 
E 5 HOH A 41 241 59 HOH HOH . 
E 5 HOH A 42 242 53 HOH HOH . 
E 5 HOH A 43 243 22 HOH HOH . 
E 5 HOH A 44 244 9 HOH HOH . 
E 5 HOH A 45 245 11 HOH HOH . 
E 5 HOH A 46 246 18 HOH HOH . 
E 5 HOH A 47 247 8 HOH HOH . 
E 5 HOH A 48 248 13 HOH HOH . 
E 5 HOH A 49 249 28 HOH HOH . 
E 5 HOH A 50 250 57 HOH HOH . 
E 5 HOH A 51 251 38 HOH HOH . 
E 5 HOH A 52 252 74 HOH HOH . 
E 5 HOH A 53 253 69 HOH HOH . 
E 5 HOH A 54 254 61 HOH HOH . 
E 5 HOH A 55 255 51 HOH HOH . 
E 5 HOH A 56 256 20 HOH HOH . 
E 5 HOH A 57 257 15 HOH HOH . 
E 5 HOH A 58 258 77 HOH HOH . 
E 5 HOH A 59 259 14 HOH HOH . 
E 5 HOH A 60 260 49 HOH HOH . 
E 5 HOH A 61 261 60 HOH HOH . 
E 5 HOH A 62 262 42 HOH HOH . 
E 5 HOH A 63 263 29 HOH HOH . 
E 5 HOH A 64 264 70 HOH HOH . 
E 5 HOH A 65 265 55 HOH HOH . 
E 5 HOH A 66 266 72 HOH HOH . 
E 5 HOH A 67 267 54 HOH HOH . 
E 5 HOH A 68 268 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 0.215 31.852 -2.743 1 21.73 ? C1 GOL 101 A 1 
HETATM 2 O O1 GOL . . . B 2 -1.185 31.844 -2.981 1 16.14 ? O1 GOL 101 A 1 
HETATM 3 C C2 GOL . . . B 2 0.813 33.232 -2.878 1 26.57 ? C2 GOL 101 A 1 
HETATM 4 O O2 GOL . . . B 2 0.354 33.854 -4.071 1 34.14 ? O2 GOL 101 A 1 
HETATM 5 C C3 GOL . . . B 2 2.325 33.186 -2.88 1 26.66 ? C3 GOL 101 A 1 
HETATM 6 O O3 GOL . . . B 2 2.91 34.303 -3.536 1 31.47 ? O3 GOL 101 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#