data_6OH2
#
_model_server_result.job_id            YzG6S9gfJgrRaXZcLWQHTg 
_model_server_result.datetime_utc      '2024-12-24 12:56:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oh2 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6OH2 
#
_exptl.entry_id    6OH2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.197 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.63 
_cell.angle_gamma         90 
_cell.entry_id            6OH2 
_cell.length_a            144.54 
_cell.length_b            49.53 
_cell.length_c            50.15 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OH2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H14 N3 O8 P' 
_chem_comp.formula_weight    323.197 
_chem_comp.id                C5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P C5P sing 70 n n 
O3P HOP3 C5P sing 71 n n 
P O1P C5P doub 72 n n 
P O2P C5P sing 73 n n 
P O5' C5P sing 74 n n 
O2P HOP2 C5P sing 75 n n 
O5' C5' C5P sing 76 n n 
C5' C4' C5P sing 77 n n 
C5' "H5'1" C5P sing 78 n n 
C5' "H5'2" C5P sing 79 n n 
C4' O4' C5P sing 80 n n 
C4' C3' C5P sing 81 n n 
C4' H4' C5P sing 82 n n 
O4' C1' C5P sing 83 n n 
C3' O3' C5P sing 84 n n 
C3' C2' C5P sing 85 n n 
C3' H3' C5P sing 86 n n 
O3' HO3' C5P sing 87 n n 
C2' O2' C5P sing 88 n n 
C2' C1' C5P sing 89 n n 
C2' "H2'1" C5P sing 90 n n 
O2' HO2' C5P sing 91 n n 
C1' N1 C5P sing 92 n n 
C1' H1' C5P sing 93 n n 
N1 C2 C5P sing 94 n n 
N1 C6 C5P sing 95 n n 
C2 N3 C5P sing 96 n n 
C2 O2 C5P doub 97 n n 
N3 C4 C5P doub 98 n n 
C4 C5 C5P sing 99 n n 
C4 N4 C5P sing 100 n n 
C5 C6 C5P doub 101 n n 
C5 H5 C5P sing 102 n n 
C6 H6 C5P sing 103 n n 
N4 HN41 C5P sing 104 n n 
N4 HN42 C5P sing 105 n n 
#
_atom_sites.entry_id                     6OH2 
_atom_sites.fract_transf_matrix[1][1]    0.006919 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002199 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020923 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 C5P A 1 401 401 C5P C5P . 
C 3 HOH A 1 501 510 HOH HOH . 
C 3 HOH A 2 502 511 HOH HOH . 
C 3 HOH A 3 503 504 HOH HOH . 
C 3 HOH A 4 504 506 HOH HOH . 
C 3 HOH A 5 505 505 HOH HOH . 
C 3 HOH A 6 506 509 HOH HOH . 
C 3 HOH A 7 507 503 HOH HOH . 
C 3 HOH A 8 508 507 HOH HOH . 
C 3 HOH A 9 509 501 HOH HOH . 
C 3 HOH A 10 510 502 HOH HOH . 
C 3 HOH A 11 511 508 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P C5P . . . B 2 15.872 -16.412 8.677 1 42.06 ? O3P C5P 401 A 1 
HETATM 2 P P C5P . . . B 2 14.606 -15.645 8.999 1 41.74 ? P C5P 401 A 1 
HETATM 3 O O1P C5P . . . B 2 13.931 -14.902 7.859 1 39.28 ? O1P C5P 401 A 1 
HETATM 4 O O2P C5P . . . B 2 13.641 -16.385 9.885 1 42.81 ? O2P C5P 401 A 1 
HETATM 5 O O5' C5P . . . B 2 15.155 -14.479 9.946 1 41.67 ? O5' C5P 401 A 1 
HETATM 6 C C5' C5P . . . B 2 15.946 -13.455 9.38 1 40.68 ? C5' C5P 401 A 1 
HETATM 7 C C4' C5P . . . B 2 16.343 -12.511 10.489 1 39.93 ? C4' C5P 401 A 1 
HETATM 8 O O4' C5P . . . B 2 17.648 -12.038 10.187 1 39.87 ? O4' C5P 401 A 1 
HETATM 9 C C3' C5P . . . B 2 15.45 -11.286 10.585 1 39.58 ? C3' C5P 401 A 1 
HETATM 10 O O3' C5P . . . B 2 15.301 -10.949 11.968 1 38.18 ? O3' C5P 401 A 1 
HETATM 11 C C2' C5P . . . B 2 16.213 -10.214 9.831 1 38.62 ? C2' C5P 401 A 1 
HETATM 12 O O2' C5P . . . B 2 15.948 -8.905 10.329 1 38.84 ? O2' C5P 401 A 1 
HETATM 13 C C1' C5P . . . B 2 17.644 -10.611 10.102 1 38.9 ? C1' C5P 401 A 1 
HETATM 14 N N1 C5P . . . B 2 18.63 -10.217 9.092 1 38.23 ? N1 C5P 401 A 1 
HETATM 15 C C2 C5P . . . B 2 19.591 -9.225 9.4 1 37.72 ? C2 C5P 401 A 1 
HETATM 16 N N3 C5P . . . B 2 20.518 -8.877 8.492 1 38.03 ? N3 C5P 401 A 1 
HETATM 17 C C4 C5P . . . B 2 20.554 -9.471 7.285 1 38.18 ? C4 C5P 401 A 1 
HETATM 18 C C5 C5P . . . B 2 19.628 -10.464 6.956 1 37.7 ? C5 C5P 401 A 1 
HETATM 19 C C6 C5P . . . B 2 18.665 -10.829 7.892 1 37.87 ? C6 C5P 401 A 1 
HETATM 20 O O2 C5P . . . B 2 19.6 -8.641 10.499 1 39.19 ? O2 C5P 401 A 1 
HETATM 21 N N4 C5P . . . B 2 21.498 -9.09 6.403 1 37.74 ? N4 C5P 401 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#