data_6OH3
#
_model_server_result.job_id            vYaSd-VXLJMojwEy0JDkpQ 
_model_server_result.datetime_utc      '2024-10-20 12:57:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oh3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6OH3 
#
_exptl.entry_id    6OH3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              614.451 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-MONOPHOSPHATE-5-N-ACETYLNEURAMINIC ACID" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.25 
_cell.angle_gamma         90 
_cell.entry_id            6OH3 
_cell.length_a            140.096 
_cell.length_b            50.123 
_cell.length_c            50.419 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OH3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H31 N4 O16 P' 
_chem_comp.formula_weight    614.451 
_chem_comp.id                NCC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-MONOPHOSPHATE-5-N-ACETYLNEURAMINIC ACID" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P NCC sing 216 n n 
O3P H3P NCC sing 217 n n 
P O2P NCC sing 218 n n 
P O1P NCC doub 219 n n 
P O5' NCC sing 220 n n 
O2P C10 NCC sing 221 n n 
O5' C5' NCC sing 222 n n 
C5' C4' NCC sing 223 n n 
C5' "H5'1" NCC sing 224 n n 
C5' "H5'2" NCC sing 225 n n 
C4' O4' NCC sing 226 n n 
C4' C3' NCC sing 227 n n 
C4' H4' NCC sing 228 n n 
O4' C1' NCC sing 229 n n 
C1' N1 NCC sing 230 n n 
C1' C2' NCC sing 231 n n 
C1' H1' NCC sing 232 n n 
N1 C6 NCC sing 233 n y 
N1 C2 NCC sing 234 n y 
C6 C5 NCC doub 235 n y 
C6 H6 NCC sing 236 n n 
C5 C4 NCC sing 237 n y 
C5 H5 NCC sing 238 n n 
C4 N4 NCC sing 239 n n 
C4 N3 NCC doub 240 n y 
N4 HN41 NCC sing 241 n n 
N4 HN42 NCC sing 242 n n 
N3 C2 NCC sing 243 n y 
C2 O2 NCC doub 244 n n 
C2' O2' NCC sing 245 n n 
C2' C3' NCC sing 246 n n 
C2' H2' NCC sing 247 n n 
O2' H1 NCC sing 248 n n 
C3' O3' NCC sing 249 n n 
C3' H3' NCC sing 250 n n 
O3' H2 NCC sing 251 n n 
C9 O1B NCC sing 252 n n 
C9 O1A NCC doub 253 n n 
C9 C10 NCC sing 254 n n 
O1B H1B NCC sing 255 n n 
C10 O6 NCC sing 256 n n 
C10 C20 NCC sing 257 n n 
O6 C12 NCC sing 258 n n 
C12 C13 NCC sing 259 n n 
C12 C16 NCC sing 260 n n 
C12 H12 NCC sing 261 n n 
C13 O7 NCC sing 262 n n 
C13 C14 NCC sing 263 n n 
C13 H13 NCC sing 264 n n 
O7 HO7 NCC sing 265 n n 
C14 O8 NCC sing 266 n n 
C14 C15 NCC sing 267 n n 
C14 H14 NCC sing 268 n n 
O8 HO8 NCC sing 269 n n 
C15 O9 NCC sing 270 n n 
C15 H151 NCC sing 271 n n 
C15 H152 NCC sing 272 n n 
O9 HO9 NCC sing 273 n n 
C16 N5 NCC sing 274 n n 
C16 C19 NCC sing 275 n n 
C16 H16 NCC sing 276 n n 
N5 C17 NCC sing 277 n n 
N5 HN5 NCC sing 278 n n 
C17 O10 NCC doub 279 n n 
C17 C18 NCC sing 280 n n 
C18 H181 NCC sing 281 n n 
C18 H182 NCC sing 282 n n 
C18 H183 NCC sing 283 n n 
C19 O4 NCC sing 284 n n 
C19 C20 NCC sing 285 n n 
C19 H19 NCC sing 286 n n 
O4 HO4 NCC sing 287 n n 
C20 H201 NCC sing 288 n n 
C20 H202 NCC sing 289 n n 
#
_atom_sites.entry_id                     6OH3 
_atom_sites.fract_transf_matrix[1][1]    0.007138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002493 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019951 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021009 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NCC A 1 401 401 NCC NCC . 
C 3 HOH A 1 501 504 HOH HOH . 
C 3 HOH A 2 502 503 HOH HOH . 
C 3 HOH A 3 503 505 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P NCC . . . B 2 -22.766 -9.531 22.833 1 81.32 ? O3P NCC 401 A 1 
HETATM 2 P P NCC . . . B 2 -23.501 -9.604 21.516 1 82.92 ? P NCC 401 A 1 
HETATM 3 O O2P NCC . . . B 2 -24.844 -8.704 21.527 1 94.54 ? O2P NCC 401 A 1 
HETATM 4 O O1P NCC . . . B 2 -22.75 -9.289 20.248 1 83.25 ? O1P NCC 401 A 1 
HETATM 5 O O5' NCC . . . B 2 -24.201 -11.042 21.299 1 82.99 ? O5' NCC 401 A 1 
HETATM 6 C C5' NCC . . . B 2 -23.999 -12.18 22.135 1 79.63 ? C5' NCC 401 A 1 
HETATM 7 C C4' NCC . . . B 2 -25.268 -13.026 22.206 1 76.4 ? C4' NCC 401 A 1 
HETATM 8 O O4' NCC . . . B 2 -25.922 -13.125 20.933 1 72.42 ? O4' NCC 401 A 1 
HETATM 9 C C1' NCC . . . B 2 -26.227 -14.504 20.697 1 72.76 ? C1' NCC 401 A 1 
HETATM 10 N N1 NCC . . . B 2 -26.313 -14.882 19.281 1 70.61 ? N1 NCC 401 A 1 
HETATM 11 C C6 NCC . . . B 2 -25.548 -14.276 18.357 1 70.9 ? C6 NCC 401 A 1 
HETATM 12 C C5 NCC . . . B 2 -25.649 -14.654 17.02 1 70.69 ? C5 NCC 401 A 1 
HETATM 13 C C4 NCC . . . B 2 -26.542 -15.663 16.657 1 70.34 ? C4 NCC 401 A 1 
HETATM 14 N N4 NCC . . . B 2 -26.645 -16.036 15.369 1 70.87 ? N4 NCC 401 A 1 
HETATM 15 N N3 NCC . . . B 2 -27.304 -16.274 17.586 1 68.7 ? N3 NCC 401 A 1 
HETATM 16 C C2 NCC . . . B 2 -27.212 -15.91 18.883 1 69.01 ? C2 NCC 401 A 1 
HETATM 17 O O2 NCC . . . B 2 -27.935 -16.499 19.713 1 67.81 ? O2 NCC 401 A 1 
HETATM 18 C C2' NCC . . . B 2 -25.112 -15.264 21.383 1 74.23 ? C2' NCC 401 A 1 
HETATM 19 O O2' NCC . . . B 2 -25.443 -16.634 21.627 1 74.64 ? O2' NCC 401 A 1 
HETATM 20 C C3' NCC . . . B 2 -24.951 -14.451 22.648 1 76.38 ? C3' NCC 401 A 1 
HETATM 21 O O3' NCC . . . B 2 -25.872 -14.88 23.661 1 77.62 ? O3' NCC 401 A 1 
HETATM 22 C C9 NCC . . . B 2 -24.675 -6.437 22.285 1 106.09 ? C9 NCC 401 A 1 
HETATM 23 O O1B NCC . . . B 2 -23.764 -6.323 21.427 1 104.97 ? O1B NCC 401 A 1 
HETATM 24 O O1A NCC . . . B 2 -25.08 -5.448 22.942 1 109.8 ? O1A NCC 401 A 1 
HETATM 25 C C10 NCC . . . B 2 -25.291 -7.8 22.553 1 104.09 ? C10 NCC 401 A 1 
HETATM 26 O O6 NCC . . . B 2 -24.933 -8.212 23.883 1 107.5 ? O6 NCC 401 A 1 
HETATM 27 C C12 NCC . . . B 2 -25.528 -9.401 24.443 1 106.85 ? C12 NCC 401 A 1 
HETATM 28 C C13 NCC . . . B 2 -24.833 -9.528 25.815 1 108.45 ? C13 NCC 401 A 1 
HETATM 29 O O7 NCC . . . B 2 -23.496 -9.978 25.553 1 110.02 ? O7 NCC 401 A 1 
HETATM 30 C C14 NCC . . . B 2 -25.411 -10.447 26.899 1 110.57 ? C14 NCC 401 A 1 
HETATM 31 O O8 NCC . . . B 2 -24.92 -9.968 28.157 1 110.24 ? O8 NCC 401 A 1 
HETATM 32 C C15 NCC . . . B 2 -25.011 -11.924 26.783 1 110.37 ? C15 NCC 401 A 1 
HETATM 33 O O9 NCC . . . B 2 -25.054 -12.392 25.431 1 110.09 ? O9 NCC 401 A 1 
HETATM 34 C C16 NCC . . . B 2 -27.064 -9.32 24.391 1 104.58 ? C16 NCC 401 A 1 
HETATM 35 N N5 NCC . . . B 2 -27.688 -10.588 24.74 1 104.89 ? N5 NCC 401 A 1 
HETATM 36 C C17 NCC . . . B 2 -28.944 -10.705 25.183 1 102.7 ? C17 NCC 401 A 1 
HETATM 37 O O10 NCC . . . B 2 -29.691 -9.756 25.351 1 102.83 ? O10 NCC 401 A 1 
HETATM 38 C C18 NCC . . . B 2 -29.406 -12.104 25.453 1 102.39 ? C18 NCC 401 A 1 
HETATM 39 C C19 NCC . . . B 2 -27.493 -8.971 22.964 1 103.65 ? C19 NCC 401 A 1 
HETATM 40 O O4 NCC . . . B 2 -28.915 -8.804 22.85 1 102.04 ? O4 NCC 401 A 1 
HETATM 41 C C20 NCC . . . B 2 -26.817 -7.699 22.464 1 104.27 ? C20 NCC 401 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           41 
#