data_6OH4 # _model_server_result.job_id prB2zAvsD1-E6La9aLPOYw _model_server_result.datetime_utc '2024-11-22 13:53:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6OH4 # _exptl.entry_id 6OH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.79 _cell.angle_gamma 90 _cell.entry_id 6OH4 _cell.length_a 51.82 _cell.length_b 193.96 _cell.length_c 66.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 70 n n O3P HOP3 C5P sing 71 n n P O1P C5P doub 72 n n P O2P C5P sing 73 n n P O5' C5P sing 74 n n O2P HOP2 C5P sing 75 n n O5' C5' C5P sing 76 n n C5' C4' C5P sing 77 n n C5' "H5'1" C5P sing 78 n n C5' "H5'2" C5P sing 79 n n C4' O4' C5P sing 80 n n C4' C3' C5P sing 81 n n C4' H4' C5P sing 82 n n O4' C1' C5P sing 83 n n C3' O3' C5P sing 84 n n C3' C2' C5P sing 85 n n C3' H3' C5P sing 86 n n O3' HO3' C5P sing 87 n n C2' O2' C5P sing 88 n n C2' C1' C5P sing 89 n n C2' "H2'1" C5P sing 90 n n O2' HO2' C5P sing 91 n n C1' N1 C5P sing 92 n n C1' H1' C5P sing 93 n n N1 C2 C5P sing 94 n n N1 C6 C5P sing 95 n n C2 N3 C5P sing 96 n n C2 O2 C5P doub 97 n n N3 C4 C5P doub 98 n n C4 C5 C5P sing 99 n n C4 N4 C5P sing 100 n n C5 C6 C5P doub 101 n n C5 H5 C5P sing 102 n n C6 H6 C5P sing 103 n n N4 HN41 C5P sing 104 n n N4 HN42 C5P sing 105 n n # _atom_sites.entry_id 6OH4 _atom_sites.fract_transf_matrix[1][1] 0.019298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C5P A 1 401 401 C5P C5P . D 2 C5P B 1 401 401 C5P C5P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . C 2 40.318 -13.587 69.547 1 135.22 ? O3P C5P 401 A 1 HETATM 2 P P C5P . . . C 2 39.073 -12.883 69.058 1 133.16 ? P C5P 401 A 1 HETATM 3 O O1P C5P . . . C 2 39.132 -12.403 67.625 1 133.77 ? O1P C5P 401 A 1 HETATM 4 O O2P C5P . . . C 2 37.785 -13.573 69.433 1 134.2 ? O2P C5P 401 A 1 HETATM 5 O O5' C5P . . . C 2 39.035 -11.521 69.907 1 129.15 ? O5' C5P 401 A 1 HETATM 6 C C5' C5P . . . C 2 40.053 -10.542 69.72 1 125.92 ? C5' C5P 401 A 1 HETATM 7 C C4' C5P . . . C 2 39.887 -9.444 70.76 1 122.77 ? C4' C5P 401 A 1 HETATM 8 O O4' C5P . . . C 2 41.176 -8.934 71.104 1 121.25 ? O4' C5P 401 A 1 HETATM 9 C C3' C5P . . . C 2 39.055 -8.269 70.263 1 119.71 ? C3' C5P 401 A 1 HETATM 10 O O3' C5P . . . C 2 38.146 -7.852 71.284 1 122.65 ? O3' C5P 401 A 1 HETATM 11 C C2' C5P . . . C 2 40.055 -7.172 69.98 1 118.41 ? C2' C5P 401 A 1 HETATM 12 O O2' C5P . . . C 2 39.561 -5.867 70.287 1 117.3 ? O2' C5P 401 A 1 HETATM 13 C C1' C5P . . . C 2 41.217 -7.524 70.888 1 120.66 ? C1' C5P 401 A 1 HETATM 14 N N1 C5P . . . C 2 42.487 -7.112 70.284 1 123.8 ? N1 C5P 401 A 1 HETATM 15 C C2 C5P . . . C 2 43.18 -5.973 70.779 1 128.33 ? C2 C5P 401 A 1 HETATM 16 N N3 C5P . . . C 2 44.351 -5.599 70.216 1 129.63 ? N3 C5P 401 A 1 HETATM 17 C C4 C5P . . . C 2 44.867 -6.298 69.183 1 127.55 ? C4 C5P 401 A 1 HETATM 18 C C5 C5P . . . C 2 44.202 -7.417 68.679 1 125.75 ? C5 C5P 401 A 1 HETATM 19 C C6 C5P . . . C 2 42.999 -7.812 69.254 1 123.55 ? C6 C5P 401 A 1 HETATM 20 O O2 C5P . . . C 2 42.737 -5.296 71.733 1 130.86 ? O2 C5P 401 A 1 HETATM 21 N N4 C5P . . . C 2 46.034 -5.909 68.636 1 125.42 ? N4 C5P 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #