data_6OI1 # _model_server_result.job_id JZzun9qEcMB6vReW-r-2OQ _model_server_result.datetime_utc '2024-11-13 00:46:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oi1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6OI1 # _exptl.entry_id 6OI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.228 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OI1 _cell.length_a 81.068 _cell.length_b 86.216 _cell.length_c 40.762 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H16 N4 O2' _chem_comp.formula_weight 188.228 _chem_comp.id NMM _chem_comp.mon_nstd_flag n _chem_comp.name '(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms L-NMMA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NH2 NMM sing 231 n n CAA HAA1 NMM sing 232 n n CAA HAA2 NMM sing 233 n n CAA HAA3 NMM sing 234 n n NH2 CZ NMM sing 235 n n NH2 HH2 NMM sing 236 n n CZ NH1 NMM doub 237 n n CZ NE NMM sing 238 n n NH1 HH1 NMM sing 239 n n NE CD NMM sing 240 n n NE HE NMM sing 241 n n CD CG NMM sing 242 n n CD HD3 NMM sing 243 n n CD HD2 NMM sing 244 n n CG CB NMM sing 245 n n CG HG3 NMM sing 246 n n CG HG2 NMM sing 247 n n CB CA NMM sing 248 n n CB HB3 NMM sing 249 n n CB HB2 NMM sing 250 n n CA C NMM sing 251 n n CA N NMM sing 252 n n CA HA NMM sing 253 n n C O NMM doub 254 n n C OXT NMM sing 255 n n OXT HXT NMM sing 256 n n N H NMM sing 257 n n N H2 NMM sing 258 n n # _atom_sites.entry_id 6OI1 _atom_sites.fract_transf_matrix[1][1] 0.012335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 4 NMM A 1 404 1 NMM M1E . F 5 HOH A 1 501 131 HOH HOH . F 5 HOH A 2 502 84 HOH HOH . F 5 HOH A 3 503 137 HOH HOH . F 5 HOH A 4 504 120 HOH HOH . F 5 HOH A 5 505 122 HOH HOH . F 5 HOH A 6 506 28 HOH HOH . F 5 HOH A 7 507 66 HOH HOH . F 5 HOH A 8 508 92 HOH HOH . F 5 HOH A 9 509 29 HOH HOH . F 5 HOH A 10 510 75 HOH HOH . F 5 HOH A 11 511 1 HOH HOH . F 5 HOH A 12 512 130 HOH HOH . F 5 HOH A 13 513 67 HOH HOH . F 5 HOH A 14 514 86 HOH HOH . F 5 HOH A 15 515 107 HOH HOH . F 5 HOH A 16 516 34 HOH HOH . F 5 HOH A 17 517 103 HOH HOH . F 5 HOH A 18 518 105 HOH HOH . F 5 HOH A 19 519 17 HOH HOH . F 5 HOH A 20 520 102 HOH HOH . F 5 HOH A 21 521 76 HOH HOH . F 5 HOH A 22 522 113 HOH HOH . F 5 HOH A 23 523 37 HOH HOH . F 5 HOH A 24 524 24 HOH HOH . F 5 HOH A 25 525 48 HOH HOH . F 5 HOH A 26 526 82 HOH HOH . F 5 HOH A 27 527 30 HOH HOH . F 5 HOH A 28 528 39 HOH HOH . F 5 HOH A 29 529 23 HOH HOH . F 5 HOH A 30 530 79 HOH HOH . F 5 HOH A 31 531 12 HOH HOH . F 5 HOH A 32 532 51 HOH HOH . F 5 HOH A 33 533 112 HOH HOH . F 5 HOH A 34 534 89 HOH HOH . F 5 HOH A 35 535 74 HOH HOH . F 5 HOH A 36 536 72 HOH HOH . F 5 HOH A 37 537 133 HOH HOH . F 5 HOH A 38 538 10 HOH HOH . F 5 HOH A 39 539 118 HOH HOH . F 5 HOH A 40 540 109 HOH HOH . F 5 HOH A 41 541 87 HOH HOH . F 5 HOH A 42 542 91 HOH HOH . F 5 HOH A 43 543 52 HOH HOH . F 5 HOH A 44 544 83 HOH HOH . F 5 HOH A 45 545 2 HOH HOH . F 5 HOH A 46 546 16 HOH HOH . F 5 HOH A 47 547 77 HOH HOH . F 5 HOH A 48 548 59 HOH HOH . F 5 HOH A 49 549 58 HOH HOH . F 5 HOH A 50 550 46 HOH HOH . F 5 HOH A 51 551 80 HOH HOH . F 5 HOH A 52 552 128 HOH HOH . F 5 HOH A 53 553 9 HOH HOH . F 5 HOH A 54 554 99 HOH HOH . F 5 HOH A 55 555 36 HOH HOH . F 5 HOH A 56 556 57 HOH HOH . F 5 HOH A 57 557 8 HOH HOH . F 5 HOH A 58 558 33 HOH HOH . F 5 HOH A 59 559 55 HOH HOH . F 5 HOH A 60 560 4 HOH HOH . F 5 HOH A 61 561 53 HOH HOH . F 5 HOH A 62 562 78 HOH HOH . F 5 HOH A 63 563 13 HOH HOH . F 5 HOH A 64 564 40 HOH HOH . F 5 HOH A 65 565 68 HOH HOH . F 5 HOH A 66 566 32 HOH HOH . F 5 HOH A 67 567 20 HOH HOH . F 5 HOH A 68 568 21 HOH HOH . F 5 HOH A 69 569 27 HOH HOH . F 5 HOH A 70 570 45 HOH HOH . F 5 HOH A 71 571 49 HOH HOH . F 5 HOH A 72 572 114 HOH HOH . F 5 HOH A 73 573 64 HOH HOH . F 5 HOH A 74 574 47 HOH HOH . F 5 HOH A 75 575 60 HOH HOH . F 5 HOH A 76 576 104 HOH HOH . F 5 HOH A 77 577 35 HOH HOH . F 5 HOH A 78 578 116 HOH HOH . F 5 HOH A 79 579 11 HOH HOH . F 5 HOH A 80 580 19 HOH HOH . F 5 HOH A 81 581 111 HOH HOH . F 5 HOH A 82 582 38 HOH HOH . F 5 HOH A 83 583 63 HOH HOH . F 5 HOH A 84 584 18 HOH HOH . F 5 HOH A 85 585 44 HOH HOH . F 5 HOH A 86 586 7 HOH HOH . F 5 HOH A 87 587 50 HOH HOH . F 5 HOH A 88 588 3 HOH HOH . F 5 HOH A 89 589 15 HOH HOH . F 5 HOH A 90 590 124 HOH HOH . F 5 HOH A 91 591 134 HOH HOH . F 5 HOH A 92 592 62 HOH HOH . F 5 HOH A 93 593 93 HOH HOH . F 5 HOH A 94 594 26 HOH HOH . F 5 HOH A 95 595 73 HOH HOH . F 5 HOH A 96 596 108 HOH HOH . F 5 HOH A 97 597 106 HOH HOH . F 5 HOH A 98 598 25 HOH HOH . F 5 HOH A 99 599 65 HOH HOH . F 5 HOH A 100 600 61 HOH HOH . F 5 HOH A 101 601 126 HOH HOH . F 5 HOH A 102 602 123 HOH HOH . F 5 HOH A 103 603 31 HOH HOH . F 5 HOH A 104 604 14 HOH HOH . F 5 HOH A 105 605 42 HOH HOH . F 5 HOH A 106 606 71 HOH HOH . F 5 HOH A 107 607 69 HOH HOH . F 5 HOH A 108 608 129 HOH HOH . F 5 HOH A 109 609 136 HOH HOH . F 5 HOH A 110 610 70 HOH HOH . F 5 HOH A 111 611 6 HOH HOH . F 5 HOH A 112 612 121 HOH HOH . F 5 HOH A 113 613 97 HOH HOH . F 5 HOH A 114 614 117 HOH HOH . F 5 HOH A 115 615 100 HOH HOH . F 5 HOH A 116 616 132 HOH HOH . F 5 HOH A 117 617 81 HOH HOH . F 5 HOH A 118 618 101 HOH HOH . F 5 HOH A 119 619 125 HOH HOH . F 5 HOH A 120 620 135 HOH HOH . F 5 HOH A 121 621 95 HOH HOH . F 5 HOH A 122 622 119 HOH HOH . F 5 HOH A 123 623 56 HOH HOH . F 5 HOH A 124 624 127 HOH HOH . F 5 HOH A 125 625 110 HOH HOH . F 5 HOH A 126 626 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA NMM . . . E 4 14.021 25.629 -16.541 1 22.64 ? CAA NMM 404 A 1 HETATM 2 N NH2 NMM . . . E 4 12.796 25.932 -17.225 1 20.81 ? NH2 NMM 404 A 1 HETATM 3 C CZ NMM . . . E 4 12.112 25.087 -17.984 1 21.83 ? CZ NMM 404 A 1 HETATM 4 N NH1 NMM . . . E 4 12.513 23.879 -18.182 1 19.77 ? NH1 NMM 404 A 1 HETATM 5 N NE NMM . . . E 4 10.981 25.589 -18.512 1 22.32 ? NE NMM 404 A 1 HETATM 6 C CD NMM . . . E 4 10.07 24.868 -19.355 1 22.73 ? CD NMM 404 A 1 HETATM 7 C CG NMM . . . E 4 10.294 25.091 -20.839 1 24.67 ? CG NMM 404 A 1 HETATM 8 C CB NMM . . . E 4 10.044 26.535 -21.234 1 26.17 ? CB NMM 404 A 1 HETATM 9 C CA NMM . . . E 4 10.372 26.776 -22.714 1 30.1 ? CA NMM 404 A 1 HETATM 10 C C NMM . . . E 4 9.393 26.049 -23.59 1 31.72 ? C NMM 404 A 1 HETATM 11 O O NMM . . . E 4 9.647 24.923 -23.997 1 32.06 ? O NMM 404 A 1 HETATM 12 O OXT NMM . . . E 4 8.295 26.542 -23.884 1 36.82 ? OXT NMM 404 A 1 HETATM 13 N N NMM . . . E 4 10.349 28.256 -22.971 1 31.18 ? N NMM 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #