data_6OI5
#
_model_server_result.job_id            Iyw8HAWfBFkW3MZJrkUcpw 
_model_server_result.datetime_utc      '2024-11-05 15:33:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oi5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6OI5 
#
_exptl.entry_id    6OI5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OI5 
_cell.length_a            76.729 
_cell.length_b            110.424 
_cell.length_c            132.124 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OI5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SD CSS 161 A CSS 201 1_555 A SG CYS 339 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 B SD CSS 161 B CSS 201 1_555 B SG CYS 339 B CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
covale ? covale1 A C LYS 160 A LYS 200 1_555 A N CSS 161 A CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C CSS 161 A CSS 201 1_555 A N ALA 162 A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C LYS 160 B LYS 200 1_555 B N CSS 161 B CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 B C CSS 161 B CSS 201 1_555 B N ALA 162 B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 97 n n 
PA O2A FAD sing 98 n n 
PA O5B FAD sing 99 n n 
PA O3P FAD sing 100 n n 
O2A HOA2 FAD sing 101 n n 
O5B C5B FAD sing 102 n n 
C5B C4B FAD sing 103 n n 
C5B H51A FAD sing 104 n n 
C5B H52A FAD sing 105 n n 
C4B O4B FAD sing 106 n n 
C4B C3B FAD sing 107 n n 
C4B H4B FAD sing 108 n n 
O4B C1B FAD sing 109 n n 
C3B O3B FAD sing 110 n n 
C3B C2B FAD sing 111 n n 
C3B H3B FAD sing 112 n n 
O3B HO3A FAD sing 113 n n 
C2B O2B FAD sing 114 n n 
C2B C1B FAD sing 115 n n 
C2B H2B FAD sing 116 n n 
O2B HO2A FAD sing 117 n n 
C1B N9A FAD sing 118 n n 
C1B H1B FAD sing 119 n n 
N9A C8A FAD sing 120 n y 
N9A C4A FAD sing 121 n y 
C8A N7A FAD doub 122 n y 
C8A H8A FAD sing 123 n n 
N7A C5A FAD sing 124 n y 
C5A C6A FAD sing 125 n y 
C5A C4A FAD doub 126 n y 
C6A N6A FAD sing 127 n n 
C6A N1A FAD doub 128 n y 
N6A H61A FAD sing 129 n n 
N6A H62A FAD sing 130 n n 
N1A C2A FAD sing 131 n y 
C2A N3A FAD doub 132 n y 
C2A H2A FAD sing 133 n n 
N3A C4A FAD sing 134 n y 
N1 C2 FAD sing 135 n n 
N1 C10 FAD doub 136 n n 
C2 O2 FAD doub 137 n n 
C2 N3 FAD sing 138 n n 
N3 C4 FAD sing 139 n n 
N3 HN3 FAD sing 140 n n 
C4 O4 FAD doub 141 n n 
C4 C4X FAD sing 142 n n 
C4X N5 FAD doub 143 n n 
C4X C10 FAD sing 144 n n 
N5 C5X FAD sing 145 n n 
C5X C6 FAD doub 146 n y 
C5X C9A FAD sing 147 n y 
C6 C7 FAD sing 148 n y 
C6 H6 FAD sing 149 n n 
C7 C7M FAD sing 150 n n 
C7 C8 FAD doub 151 n y 
C7M HM71 FAD sing 152 n n 
C7M HM72 FAD sing 153 n n 
C7M HM73 FAD sing 154 n n 
C8 C8M FAD sing 155 n n 
C8 C9 FAD sing 156 n y 
C8M HM81 FAD sing 157 n n 
C8M HM82 FAD sing 158 n n 
C8M HM83 FAD sing 159 n n 
C9 C9A FAD doub 160 n y 
C9 H9 FAD sing 161 n n 
C9A N10 FAD sing 162 n n 
N10 C10 FAD sing 163 n n 
N10 C1' FAD sing 164 n n 
C1' C2' FAD sing 165 n n 
C1' "H1'1" FAD sing 166 n n 
C1' "H1'2" FAD sing 167 n n 
C2' O2' FAD sing 168 n n 
C2' C3' FAD sing 169 n n 
C2' H2' FAD sing 170 n n 
O2' HO2' FAD sing 171 n n 
C3' O3' FAD sing 172 n n 
C3' C4' FAD sing 173 n n 
C3' H3' FAD sing 174 n n 
O3' HO3' FAD sing 175 n n 
C4' O4' FAD sing 176 n n 
C4' C5' FAD sing 177 n n 
C4' H4' FAD sing 178 n n 
O4' HO4' FAD sing 179 n n 
C5' O5' FAD sing 180 n n 
C5' "H5'1" FAD sing 181 n n 
C5' "H5'2" FAD sing 182 n n 
O5' P FAD sing 183 n n 
P O1P FAD doub 184 n n 
P O2P FAD sing 185 n n 
P O3P FAD sing 186 n n 
O2P HOP2 FAD sing 187 n n 
#
_atom_sites.entry_id                     6OI5 
_atom_sites.fract_transf_matrix[1][1]    0.013033 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009056 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 501 FAD FAD . 
D 2 FAD B 1 501 501 FAD FAD . 
E 3 HOH A 1 601 21 HOH HOH . 
E 3 HOH A 2 602 37 HOH HOH . 
E 3 HOH A 3 603 34 HOH HOH . 
E 3 HOH A 4 604 16 HOH HOH . 
E 3 HOH A 5 605 13 HOH HOH . 
E 3 HOH A 6 606 25 HOH HOH . 
E 3 HOH A 7 607 4 HOH HOH . 
E 3 HOH A 8 608 5 HOH HOH . 
E 3 HOH A 9 609 35 HOH HOH . 
E 3 HOH A 10 610 11 HOH HOH . 
E 3 HOH A 11 611 22 HOH HOH . 
E 3 HOH A 12 612 40 HOH HOH . 
E 3 HOH A 13 613 42 HOH HOH . 
E 3 HOH A 14 614 43 HOH HOH . 
F 3 HOH B 1 601 14 HOH HOH . 
F 3 HOH B 2 602 44 HOH HOH . 
F 3 HOH B 3 603 18 HOH HOH . 
F 3 HOH B 4 604 32 HOH HOH . 
F 3 HOH B 5 605 2 HOH HOH . 
F 3 HOH B 6 606 28 HOH HOH . 
F 3 HOH B 7 607 20 HOH HOH . 
F 3 HOH B 8 608 26 HOH HOH . 
F 3 HOH B 9 609 30 HOH HOH . 
F 3 HOH B 10 610 1 HOH HOH . 
F 3 HOH B 11 611 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 10.922 25.221 -20.14 1 23.25 ? PA FAD 501 A 1 
HETATM 2 O O1A FAD . . . C 2 11.374 23.887 -20.56 1 19.05 ? O1A FAD 501 A 1 
HETATM 3 O O2A FAD . . . C 2 10.699 26.251 -21.273 1 32.14 ? O2A FAD 501 A 1 
HETATM 4 O O5B FAD . . . C 2 9.567 25.06 -19.325 1 21.27 ? O5B FAD 501 A 1 
HETATM 5 C C5B FAD . . . C 2 9.054 26.107 -18.47 1 20.27 ? C5B FAD 501 A 1 
HETATM 6 C C4B FAD . . . C 2 7.577 25.827 -18.264 1 29.34 ? C4B FAD 501 A 1 
HETATM 7 O O4B FAD . . . C 2 6.994 26.8 -17.37 1 24.87 ? O4B FAD 501 A 1 
HETATM 8 C C3B FAD . . . C 2 6.694 25.803 -19.521 1 23.37 ? C3B FAD 501 A 1 
HETATM 9 O O3B FAD . . . C 2 6.023 24.552 -19.666 1 24.88 ? O3B FAD 501 A 1 
HETATM 10 C C2B FAD . . . C 2 5.701 26.948 -19.288 1 16.72 ? C2B FAD 501 A 1 
HETATM 11 O O2B FAD . . . C 2 4.404 26.637 -19.781 1 25.7 ? O2B FAD 501 A 1 
HETATM 12 C C1B FAD . . . C 2 5.66 26.993 -17.77 1 22.05 ? C1B FAD 501 A 1 
HETATM 13 N N9A FAD . . . C 2 5.184 28.255 -17.217 1 26.94 ? N9A FAD 501 A 1 
HETATM 14 C C8A FAD . . . C 2 5.483 29.518 -17.656 1 29.09 ? C8A FAD 501 A 1 
HETATM 15 N N7A FAD . . . C 2 4.915 30.477 -16.961 1 34.2 ? N7A FAD 501 A 1 
HETATM 16 C C5A FAD . . . C 2 4.187 29.795 -15.996 1 33.72 ? C5A FAD 501 A 1 
HETATM 17 C C6A FAD . . . C 2 3.356 30.234 -14.947 1 35.2 ? C6A FAD 501 A 1 
HETATM 18 N N6A FAD . . . C 2 3.108 31.519 -14.683 1 28.53 ? N6A FAD 501 A 1 
HETATM 19 N N1A FAD . . . C 2 2.78 29.29 -14.171 1 42.12 ? N1A FAD 501 A 1 
HETATM 20 C C2A FAD . . . C 2 3.022 28 -14.435 1 37.13 ? C2A FAD 501 A 1 
HETATM 21 N N3A FAD . . . C 2 3.79 27.467 -15.389 1 22.35 ? N3A FAD 501 A 1 
HETATM 22 C C4A FAD . . . C 2 4.344 28.424 -16.142 1 29.11 ? C4A FAD 501 A 1 
HETATM 23 N N1 FAD . . . C 2 18.75 23.732 -24.955 1 41.69 ? N1 FAD 501 A 1 
HETATM 24 C C2 FAD . . . C 2 19.804 22.863 -25.045 1 43.76 ? C2 FAD 501 A 1 
HETATM 25 O O2 FAD . . . C 2 20.37 22.39 -24.046 1 34.26 ? O2 FAD 501 A 1 
HETATM 26 N N3 FAD . . . C 2 20.262 22.482 -26.287 1 42.26 ? N3 FAD 501 A 1 
HETATM 27 C C4 FAD . . . C 2 19.772 22.895 -27.483 1 41.48 ? C4 FAD 501 A 1 
HETATM 28 O O4 FAD . . . C 2 20.276 22.481 -28.519 1 51.36 ? O4 FAD 501 A 1 
HETATM 29 C C4X FAD . . . C 2 18.654 23.805 -27.391 1 35.99 ? C4X FAD 501 A 1 
HETATM 30 N N5 FAD . . . C 2 18.127 24.239 -28.5 1 40.48 ? N5 FAD 501 A 1 
HETATM 31 C C5X FAD . . . C 2 17.048 25.089 -28.417 1 31.61 ? C5X FAD 501 A 1 
HETATM 32 C C6 FAD . . . C 2 16.463 25.556 -29.596 1 37.17 ? C6 FAD 501 A 1 
HETATM 33 C C7 FAD . . . C 2 15.377 26.43 -29.561 1 34.7 ? C7 FAD 501 A 1 
HETATM 34 C C7M FAD . . . C 2 14.762 26.916 -30.848 1 28.61 ? C7M FAD 501 A 1 
HETATM 35 C C8 FAD . . . C 2 14.854 26.83 -28.322 1 33.31 ? C8 FAD 501 A 1 
HETATM 36 C C8M FAD . . . C 2 13.671 27.751 -28.25 1 29.74 ? C8M FAD 501 A 1 
HETATM 37 C C9 FAD . . . C 2 15.432 26.36 -27.149 1 34.75 ? C9 FAD 501 A 1 
HETATM 38 C C9A FAD . . . C 2 16.519 25.495 -27.187 1 29.77 ? C9A FAD 501 A 1 
HETATM 39 N N10 FAD . . . C 2 17.108 24.989 -26.009 1 33.97 ? N10 FAD 501 A 1 
HETATM 40 C C10 FAD . . . C 2 18.206 24.166 -26.078 1 34.27 ? C10 FAD 501 A 1 
HETATM 41 C C1' FAD . . . C 2 16.67 25.492 -24.697 1 28.43 ? C1' FAD 501 A 1 
HETATM 42 C C2' FAD . . . C 2 16.027 24.477 -23.776 1 26.79 ? C2' FAD 501 A 1 
HETATM 43 O O2' FAD . . . C 2 14.783 24.074 -24.338 1 46.7 ? O2' FAD 501 A 1 
HETATM 44 C C3' FAD . . . C 2 15.742 25.179 -22.45 1 30.03 ? C3' FAD 501 A 1 
HETATM 45 O O3' FAD . . . C 2 16.951 25.727 -21.944 1 37.35 ? O3' FAD 501 A 1 
HETATM 46 C C4' FAD . . . C 2 15.092 24.329 -21.368 1 26.82 ? C4' FAD 501 A 1 
HETATM 47 O O4' FAD . . . C 2 13.768 24 -21.775 1 29.82 ? O4' FAD 501 A 1 
HETATM 48 C C5' FAD . . . C 2 14.965 25.046 -20.047 1 23.38 ? C5' FAD 501 A 1 
HETATM 49 O O5' FAD . . . C 2 13.962 24.372 -19.268 1 24.45 ? O5' FAD 501 A 1 
HETATM 50 P P FAD . . . C 2 13.085 25.134 -18.22 1 53.6 ? P FAD 501 A 1 
HETATM 51 O O1P FAD . . . C 2 12.421 23.991 -17.446 1 27.66 ? O1P FAD 501 A 1 
HETATM 52 O O2P FAD . . . C 2 13.852 26.179 -17.416 1 29.67 ? O2P FAD 501 A 1 
HETATM 53 O O3P FAD . . . C 2 11.965 25.848 -19.121 1 30.16 ? O3P FAD 501 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#