data_6OI5 # _model_server_result.job_id edz33kmJBUV56rHfYmpEFQ _model_server_result.datetime_utc '2024-11-23 20:06:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oi5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6OI5 # _exptl.entry_id 6OI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OI5 _cell.length_a 76.729 _cell.length_b 110.424 _cell.length_c 132.124 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SD CSS 161 A CSS 201 1_555 A SG CYS 339 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SD CSS 161 B CSS 201 1_555 B SG CYS 339 B CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A C LYS 160 A LYS 200 1_555 A N CSS 161 A CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSS 161 A CSS 201 1_555 A N ALA 162 A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C LYS 160 B LYS 200 1_555 B N CSS 161 B CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 B C CSS 161 B CSS 201 1_555 B N ALA 162 B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 97 n n PA O2A FAD sing 98 n n PA O5B FAD sing 99 n n PA O3P FAD sing 100 n n O2A HOA2 FAD sing 101 n n O5B C5B FAD sing 102 n n C5B C4B FAD sing 103 n n C5B H51A FAD sing 104 n n C5B H52A FAD sing 105 n n C4B O4B FAD sing 106 n n C4B C3B FAD sing 107 n n C4B H4B FAD sing 108 n n O4B C1B FAD sing 109 n n C3B O3B FAD sing 110 n n C3B C2B FAD sing 111 n n C3B H3B FAD sing 112 n n O3B HO3A FAD sing 113 n n C2B O2B FAD sing 114 n n C2B C1B FAD sing 115 n n C2B H2B FAD sing 116 n n O2B HO2A FAD sing 117 n n C1B N9A FAD sing 118 n n C1B H1B FAD sing 119 n n N9A C8A FAD sing 120 n y N9A C4A FAD sing 121 n y C8A N7A FAD doub 122 n y C8A H8A FAD sing 123 n n N7A C5A FAD sing 124 n y C5A C6A FAD sing 125 n y C5A C4A FAD doub 126 n y C6A N6A FAD sing 127 n n C6A N1A FAD doub 128 n y N6A H61A FAD sing 129 n n N6A H62A FAD sing 130 n n N1A C2A FAD sing 131 n y C2A N3A FAD doub 132 n y C2A H2A FAD sing 133 n n N3A C4A FAD sing 134 n y N1 C2 FAD sing 135 n n N1 C10 FAD doub 136 n n C2 O2 FAD doub 137 n n C2 N3 FAD sing 138 n n N3 C4 FAD sing 139 n n N3 HN3 FAD sing 140 n n C4 O4 FAD doub 141 n n C4 C4X FAD sing 142 n n C4X N5 FAD doub 143 n n C4X C10 FAD sing 144 n n N5 C5X FAD sing 145 n n C5X C6 FAD doub 146 n y C5X C9A FAD sing 147 n y C6 C7 FAD sing 148 n y C6 H6 FAD sing 149 n n C7 C7M FAD sing 150 n n C7 C8 FAD doub 151 n y C7M HM71 FAD sing 152 n n C7M HM72 FAD sing 153 n n C7M HM73 FAD sing 154 n n C8 C8M FAD sing 155 n n C8 C9 FAD sing 156 n y C8M HM81 FAD sing 157 n n C8M HM82 FAD sing 158 n n C8M HM83 FAD sing 159 n n C9 C9A FAD doub 160 n y C9 H9 FAD sing 161 n n C9A N10 FAD sing 162 n n N10 C10 FAD sing 163 n n N10 C1' FAD sing 164 n n C1' C2' FAD sing 165 n n C1' "H1'1" FAD sing 166 n n C1' "H1'2" FAD sing 167 n n C2' O2' FAD sing 168 n n C2' C3' FAD sing 169 n n C2' H2' FAD sing 170 n n O2' HO2' FAD sing 171 n n C3' O3' FAD sing 172 n n C3' C4' FAD sing 173 n n C3' H3' FAD sing 174 n n O3' HO3' FAD sing 175 n n C4' O4' FAD sing 176 n n C4' C5' FAD sing 177 n n C4' H4' FAD sing 178 n n O4' HO4' FAD sing 179 n n C5' O5' FAD sing 180 n n C5' "H5'1" FAD sing 181 n n C5' "H5'2" FAD sing 182 n n O5' P FAD sing 183 n n P O1P FAD doub 184 n n P O2P FAD sing 185 n n P O3P FAD sing 186 n n O2P HOP2 FAD sing 187 n n # _atom_sites.entry_id 6OI5 _atom_sites.fract_transf_matrix[1][1] 0.013033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 2 FAD B 1 501 501 FAD FAD . E 3 HOH A 1 601 21 HOH HOH . E 3 HOH A 2 602 37 HOH HOH . E 3 HOH A 3 603 34 HOH HOH . E 3 HOH A 4 604 16 HOH HOH . E 3 HOH A 5 605 13 HOH HOH . E 3 HOH A 6 606 25 HOH HOH . E 3 HOH A 7 607 4 HOH HOH . E 3 HOH A 8 608 5 HOH HOH . E 3 HOH A 9 609 35 HOH HOH . E 3 HOH A 10 610 11 HOH HOH . E 3 HOH A 11 611 22 HOH HOH . E 3 HOH A 12 612 40 HOH HOH . E 3 HOH A 13 613 42 HOH HOH . E 3 HOH A 14 614 43 HOH HOH . F 3 HOH B 1 601 14 HOH HOH . F 3 HOH B 2 602 44 HOH HOH . F 3 HOH B 3 603 18 HOH HOH . F 3 HOH B 4 604 32 HOH HOH . F 3 HOH B 5 605 2 HOH HOH . F 3 HOH B 6 606 28 HOH HOH . F 3 HOH B 7 607 20 HOH HOH . F 3 HOH B 8 608 26 HOH HOH . F 3 HOH B 9 609 30 HOH HOH . F 3 HOH B 10 610 1 HOH HOH . F 3 HOH B 11 611 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 10.922 25.221 -20.14 1 23.25 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . C 2 11.374 23.887 -20.56 1 19.05 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . C 2 10.699 26.251 -21.273 1 32.14 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . C 2 9.567 25.06 -19.325 1 21.27 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . C 2 9.054 26.107 -18.47 1 20.27 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . C 2 7.577 25.827 -18.264 1 29.34 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . C 2 6.994 26.8 -17.37 1 24.87 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . C 2 6.694 25.803 -19.521 1 23.37 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . C 2 6.023 24.552 -19.666 1 24.88 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . C 2 5.701 26.948 -19.288 1 16.72 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . C 2 4.404 26.637 -19.781 1 25.7 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . C 2 5.66 26.993 -17.77 1 22.05 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . C 2 5.184 28.255 -17.217 1 26.94 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . C 2 5.483 29.518 -17.656 1 29.09 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . C 2 4.915 30.477 -16.961 1 34.2 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . C 2 4.187 29.795 -15.996 1 33.72 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . C 2 3.356 30.234 -14.947 1 35.2 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . C 2 3.108 31.519 -14.683 1 28.53 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . C 2 2.78 29.29 -14.171 1 42.12 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . C 2 3.022 28 -14.435 1 37.13 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . C 2 3.79 27.467 -15.389 1 22.35 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . C 2 4.344 28.424 -16.142 1 29.11 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . C 2 18.75 23.732 -24.955 1 41.69 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . C 2 19.804 22.863 -25.045 1 43.76 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . C 2 20.37 22.39 -24.046 1 34.26 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . C 2 20.262 22.482 -26.287 1 42.26 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . C 2 19.772 22.895 -27.483 1 41.48 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . C 2 20.276 22.481 -28.519 1 51.36 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . C 2 18.654 23.805 -27.391 1 35.99 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . C 2 18.127 24.239 -28.5 1 40.48 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . C 2 17.048 25.089 -28.417 1 31.61 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . C 2 16.463 25.556 -29.596 1 37.17 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . C 2 15.377 26.43 -29.561 1 34.7 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . C 2 14.762 26.916 -30.848 1 28.61 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . C 2 14.854 26.83 -28.322 1 33.31 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . C 2 13.671 27.751 -28.25 1 29.74 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . C 2 15.432 26.36 -27.149 1 34.75 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . C 2 16.519 25.495 -27.187 1 29.77 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . C 2 17.108 24.989 -26.009 1 33.97 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . C 2 18.206 24.166 -26.078 1 34.27 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . C 2 16.67 25.492 -24.697 1 28.43 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . C 2 16.027 24.477 -23.776 1 26.79 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . C 2 14.783 24.074 -24.338 1 46.7 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . C 2 15.742 25.179 -22.45 1 30.03 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . C 2 16.951 25.727 -21.944 1 37.35 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . C 2 15.092 24.329 -21.368 1 26.82 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . C 2 13.768 24 -21.775 1 29.82 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . C 2 14.965 25.046 -20.047 1 23.38 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . C 2 13.962 24.372 -19.268 1 24.45 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . C 2 13.085 25.134 -18.22 1 53.6 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . C 2 12.421 23.991 -17.446 1 27.66 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . C 2 13.852 26.179 -17.416 1 29.67 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . C 2 11.965 25.848 -19.121 1 30.16 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #