data_6OI6 # _model_server_result.job_id dvvK2JhvSj80HpkmxpLU9g _model_server_result.datetime_utc '2024-11-26 11:12:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 6OI6 # _exptl.entry_id 6OI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OI6 _cell.length_a 76.532 _cell.length_b 111.959 _cell.length_c 136.485 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SD CSS 161 A CSS 201 1_555 A SG CYS 339 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SD CSS 161 B CSS 201 1_555 B SG CYS 339 B CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A C LYS 160 A LYS 200 1_555 A N CSS 161 A CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSS 161 A CSS 201 1_555 A N ALA 162 A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C LYS 160 B LYS 200 1_555 B N CSS 161 B CSS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 B C CSS 161 B CSS 201 1_555 B N ALA 162 B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 UQ1 doub 463 n n C1 C2 UQ1 sing 464 n n C1 C6 UQ1 sing 465 n n C2 O2 UQ1 sing 466 n n C2 C3 UQ1 doub 467 n n O2 CM2 UQ1 sing 468 n n CM2 HM21 UQ1 sing 469 n n CM2 HM22 UQ1 sing 470 n n CM2 HM23 UQ1 sing 471 n n C3 O3 UQ1 sing 472 n n C3 C4 UQ1 sing 473 n n O3 CM3 UQ1 sing 474 n n CM3 HM31 UQ1 sing 475 n n CM3 HM32 UQ1 sing 476 n n CM3 HM33 UQ1 sing 477 n n C4 O4 UQ1 doub 478 n n C4 C5 UQ1 sing 479 n n C5 CM5 UQ1 sing 480 n n C5 C6 UQ1 doub 481 n n CM5 HM51 UQ1 sing 482 n n CM5 HM52 UQ1 sing 483 n n CM5 HM53 UQ1 sing 484 n n C6 C7 UQ1 sing 485 n n C7 C8 UQ1 sing 486 n n C7 H71 UQ1 sing 487 n n C7 H72 UQ1 sing 488 n n C8 C9 UQ1 doub 489 n n C8 H8 UQ1 sing 490 n n C9 C10 UQ1 sing 491 n n C9 C11 UQ1 sing 492 n n C10 H101 UQ1 sing 493 n n C10 H102 UQ1 sing 494 n n C10 H103 UQ1 sing 495 n n C11 H111 UQ1 sing 496 n n C11 H112 UQ1 sing 497 n n C11 H113 UQ1 sing 498 n n # _atom_sites.entry_id 6OI6 _atom_sites.fract_transf_matrix[1][1] 0.013066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 3 UQ1 A 1 502 501 UQ1 UQ1 . E 3 UQ1 A 1 503 502 UQ1 UQ1 . F 2 FAD B 1 501 501 FAD FAD . G 4 HOH A 1 601 5 HOH HOH . G 4 HOH A 2 602 4 HOH HOH . G 4 HOH A 3 603 33 HOH HOH . G 4 HOH A 4 604 47 HOH HOH . G 4 HOH A 5 605 46 HOH HOH . G 4 HOH A 6 606 9 HOH HOH . G 4 HOH A 7 607 44 HOH HOH . G 4 HOH A 8 608 8 HOH HOH . G 4 HOH A 9 609 21 HOH HOH . G 4 HOH A 10 610 45 HOH HOH . G 4 HOH A 11 611 25 HOH HOH . G 4 HOH A 12 612 6 HOH HOH . G 4 HOH A 13 613 35 HOH HOH . G 4 HOH A 14 614 38 HOH HOH . G 4 HOH A 15 615 28 HOH HOH . G 4 HOH A 16 616 29 HOH HOH . G 4 HOH A 17 617 37 HOH HOH . G 4 HOH A 18 618 31 HOH HOH . G 4 HOH A 19 619 20 HOH HOH . G 4 HOH A 20 620 26 HOH HOH . G 4 HOH A 21 621 32 HOH HOH . H 4 HOH B 1 601 2 HOH HOH . H 4 HOH B 2 602 15 HOH HOH . H 4 HOH B 3 603 19 HOH HOH . H 4 HOH B 4 604 1 HOH HOH . H 4 HOH B 5 605 34 HOH HOH . H 4 HOH B 6 606 30 HOH HOH . H 4 HOH B 7 607 42 HOH HOH . H 4 HOH B 8 608 18 HOH HOH . H 4 HOH B 9 609 10 HOH HOH . H 4 HOH B 10 610 27 HOH HOH . H 4 HOH B 11 611 22 HOH HOH . H 4 HOH B 12 612 23 HOH HOH . H 4 HOH B 13 613 17 HOH HOH . H 4 HOH B 14 614 24 HOH HOH . H 4 HOH B 15 615 39 HOH HOH . H 4 HOH B 16 616 43 HOH HOH . H 4 HOH B 17 617 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . E 3 -3.695 15.768 40.466 1 78.1 ? C1 UQ1 503 A 1 HETATM 2 O O1 UQ1 . . . E 3 -3.001 15.872 39.521 1 90.88 ? O1 UQ1 503 A 1 HETATM 3 C C2 UQ1 . . . E 3 -5.171 15.414 40.32 1 65.18 ? C2 UQ1 503 A 1 HETATM 4 O O2 UQ1 . . . E 3 -5.785 15.178 39.069 1 59.91 ? O2 UQ1 503 A 1 HETATM 5 C CM2 UQ1 . . . E 3 -5.867 16.299 38.228 1 53.82 ? CM2 UQ1 503 A 1 HETATM 6 C C3 UQ1 . . . E 3 -5.984 15.297 41.588 1 59.39 ? C3 UQ1 503 A 1 HETATM 7 O O3 UQ1 . . . E 3 -7.318 14.942 41.454 1 59.18 ? O3 UQ1 503 A 1 HETATM 8 C CM3 UQ1 . . . E 3 -7.445 13.617 41.032 1 54.14 ? CM3 UQ1 503 A 1 HETATM 9 C C4 UQ1 . . . E 3 -5.378 15.518 42.968 1 66.1 ? C4 UQ1 503 A 1 HETATM 10 O O4 UQ1 . . . E 3 -6.091 15.412 43.913 1 68.93 ? O4 UQ1 503 A 1 HETATM 11 C C5 UQ1 . . . E 3 -3.888 15.881 43.105 1 70.14 ? C5 UQ1 503 A 1 HETATM 12 C CM5 UQ1 . . . E 3 -3.165 16.15 44.438 1 58.72 ? CM5 UQ1 503 A 1 HETATM 13 C C6 UQ1 . . . E 3 -3.068 15.983 41.836 1 75.06 ? C6 UQ1 503 A 1 HETATM 14 C C7 UQ1 . . . E 3 -1.599 16.365 41.958 1 70.12 ? C7 UQ1 503 A 1 HETATM 15 C C8 UQ1 . . . E 3 -0.613 15.205 41.921 1 58.68 ? C8 UQ1 503 A 1 HETATM 16 C C9 UQ1 . . . E 3 0.442 15.339 42.713 1 55.69 ? C9 UQ1 503 A 1 HETATM 17 C C10 UQ1 . . . E 3 0.612 16.564 43.603 1 50.88 ? C10 UQ1 503 A 1 HETATM 18 C C11 UQ1 . . . E 3 1.535 14.286 42.787 1 53.95 ? C11 UQ1 503 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #