data_6OIB # _model_server_result.job_id MK4l0D1TMlQxabNTic-sDA _model_server_result.datetime_utc '2024-11-22 23:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 6OIB # _exptl.entry_id 6OIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.29 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-1 _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OIB _cell.length_a 78.516 _cell.length_b 111.512 _cell.length_c 133.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,C,D,E,F,G,H,M 2 1 B,I,J,K,L,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 161 A CYS 201 1_555 G S H2S . A H2S 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale2 A SG CYS 339 A CYS 379 1_555 H S H2S . A H2S 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale3 B SG CYS 161 B CYS 201 1_555 K S H2S . B H2S 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? covale ? covale4 B SG CYS 339 B CYS 379 1_555 L S H2S . B H2S 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'C14 H18 O4' _chem_comp.formula_weight 250.29 _chem_comp.id UQ1 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-1 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OIB _atom_sites.fract_transf_matrix[1][1] 0.012736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 501 GOL GOL . D 3 FAD A 1 502 501 FAD FAD . E 4 UQ1 A 1 503 502 UQ1 UQ1 . F 4 UQ1 A 1 504 501 UQ1 UQ1 . G 5 H2S A 1 505 1 H2S H2S . H 5 H2S A 1 506 4 H2S H2S . I 4 UQ1 B 1 501 501 UQ1 UQ1 . J 3 FAD B 1 502 501 FAD FAD . K 5 H2S B 1 503 2 H2S H2S . L 5 H2S B 1 504 5 H2S H2S . M 6 HOH A 1 601 123 HOH HOH . M 6 HOH A 2 602 30 HOH HOH . M 6 HOH A 3 603 199 HOH HOH . M 6 HOH A 4 604 39 HOH HOH . M 6 HOH A 5 605 205 HOH HOH . M 6 HOH A 6 606 167 HOH HOH . M 6 HOH A 7 607 21 HOH HOH . M 6 HOH A 8 608 57 HOH HOH . M 6 HOH A 9 609 64 HOH HOH . M 6 HOH A 10 610 92 HOH HOH . M 6 HOH A 11 611 122 HOH HOH . M 6 HOH A 12 612 149 HOH HOH . M 6 HOH A 13 613 210 HOH HOH . M 6 HOH A 14 614 212 HOH HOH . M 6 HOH A 15 615 152 HOH HOH . M 6 HOH A 16 616 173 HOH HOH . M 6 HOH A 17 617 169 HOH HOH . M 6 HOH A 18 618 104 HOH HOH . M 6 HOH A 19 619 189 HOH HOH . M 6 HOH A 20 620 31 HOH HOH . M 6 HOH A 21 621 183 HOH HOH . M 6 HOH A 22 622 75 HOH HOH . M 6 HOH A 23 623 203 HOH HOH . M 6 HOH A 24 624 131 HOH HOH . M 6 HOH A 25 625 146 HOH HOH . M 6 HOH A 26 626 56 HOH HOH . M 6 HOH A 27 627 17 HOH HOH . M 6 HOH A 28 628 155 HOH HOH . M 6 HOH A 29 629 175 HOH HOH . M 6 HOH A 30 630 14 HOH HOH . M 6 HOH A 31 631 130 HOH HOH . M 6 HOH A 32 632 191 HOH HOH . M 6 HOH A 33 633 190 HOH HOH . M 6 HOH A 34 634 69 HOH HOH . M 6 HOH A 35 635 4 HOH HOH . M 6 HOH A 36 636 41 HOH HOH . M 6 HOH A 37 637 6 HOH HOH . M 6 HOH A 38 638 142 HOH HOH . M 6 HOH A 39 639 192 HOH HOH . M 6 HOH A 40 640 22 HOH HOH . M 6 HOH A 41 641 8 HOH HOH . M 6 HOH A 42 642 20 HOH HOH . M 6 HOH A 43 643 66 HOH HOH . M 6 HOH A 44 644 206 HOH HOH . M 6 HOH A 45 645 85 HOH HOH . M 6 HOH A 46 646 198 HOH HOH . M 6 HOH A 47 647 27 HOH HOH . M 6 HOH A 48 648 145 HOH HOH . M 6 HOH A 49 649 112 HOH HOH . M 6 HOH A 50 650 125 HOH HOH . M 6 HOH A 51 651 9 HOH HOH . M 6 HOH A 52 652 135 HOH HOH . M 6 HOH A 53 653 16 HOH HOH . M 6 HOH A 54 654 159 HOH HOH . M 6 HOH A 55 655 185 HOH HOH . M 6 HOH A 56 656 154 HOH HOH . M 6 HOH A 57 657 121 HOH HOH . M 6 HOH A 58 658 79 HOH HOH . M 6 HOH A 59 659 36 HOH HOH . M 6 HOH A 60 660 19 HOH HOH . M 6 HOH A 61 661 23 HOH HOH . M 6 HOH A 62 662 180 HOH HOH . M 6 HOH A 63 663 51 HOH HOH . M 6 HOH A 64 664 144 HOH HOH . M 6 HOH A 65 665 2 HOH HOH . M 6 HOH A 66 666 101 HOH HOH . M 6 HOH A 67 667 25 HOH HOH . M 6 HOH A 68 668 5 HOH HOH . M 6 HOH A 69 669 83 HOH HOH . M 6 HOH A 70 670 55 HOH HOH . M 6 HOH A 71 671 29 HOH HOH . M 6 HOH A 72 672 202 HOH HOH . M 6 HOH A 73 673 87 HOH HOH . M 6 HOH A 74 674 34 HOH HOH . M 6 HOH A 75 675 184 HOH HOH . M 6 HOH A 76 676 127 HOH HOH . M 6 HOH A 77 677 73 HOH HOH . M 6 HOH A 78 678 134 HOH HOH . M 6 HOH A 79 679 91 HOH HOH . M 6 HOH A 80 680 138 HOH HOH . M 6 HOH A 81 681 178 HOH HOH . M 6 HOH A 82 682 72 HOH HOH . M 6 HOH A 83 683 80 HOH HOH . M 6 HOH A 84 684 45 HOH HOH . M 6 HOH A 85 685 99 HOH HOH . M 6 HOH A 86 686 151 HOH HOH . M 6 HOH A 87 687 171 HOH HOH . M 6 HOH A 88 688 54 HOH HOH . M 6 HOH A 89 689 179 HOH HOH . M 6 HOH A 90 690 170 HOH HOH . M 6 HOH A 91 691 161 HOH HOH . M 6 HOH A 92 692 136 HOH HOH . M 6 HOH A 93 693 128 HOH HOH . M 6 HOH A 94 694 98 HOH HOH . M 6 HOH A 95 695 119 HOH HOH . M 6 HOH A 96 696 76 HOH HOH . M 6 HOH A 97 697 84 HOH HOH . M 6 HOH A 98 698 147 HOH HOH . M 6 HOH A 99 699 208 HOH HOH . M 6 HOH A 100 700 209 HOH HOH . M 6 HOH A 101 701 96 HOH HOH . M 6 HOH A 102 702 204 HOH HOH . M 6 HOH A 103 703 157 HOH HOH . M 6 HOH A 104 704 95 HOH HOH . N 6 HOH B 1 601 197 HOH HOH . N 6 HOH B 2 602 143 HOH HOH . N 6 HOH B 3 603 174 HOH HOH . N 6 HOH B 4 604 94 HOH HOH . N 6 HOH B 5 605 139 HOH HOH . N 6 HOH B 6 606 53 HOH HOH . N 6 HOH B 7 607 133 HOH HOH . N 6 HOH B 8 608 89 HOH HOH . N 6 HOH B 9 609 129 HOH HOH . N 6 HOH B 10 610 33 HOH HOH . N 6 HOH B 11 611 177 HOH HOH . N 6 HOH B 12 612 49 HOH HOH . N 6 HOH B 13 613 15 HOH HOH . N 6 HOH B 14 614 195 HOH HOH . N 6 HOH B 15 615 35 HOH HOH . N 6 HOH B 16 616 61 HOH HOH . N 6 HOH B 17 617 166 HOH HOH . N 6 HOH B 18 618 50 HOH HOH . N 6 HOH B 19 619 165 HOH HOH . N 6 HOH B 20 620 200 HOH HOH . N 6 HOH B 21 621 132 HOH HOH . N 6 HOH B 22 622 13 HOH HOH . N 6 HOH B 23 623 141 HOH HOH . N 6 HOH B 24 624 47 HOH HOH . N 6 HOH B 25 625 88 HOH HOH . N 6 HOH B 26 626 65 HOH HOH . N 6 HOH B 27 627 7 HOH HOH . N 6 HOH B 28 628 28 HOH HOH . N 6 HOH B 29 629 193 HOH HOH . N 6 HOH B 30 630 77 HOH HOH . N 6 HOH B 31 631 102 HOH HOH . N 6 HOH B 32 632 78 HOH HOH . N 6 HOH B 33 633 187 HOH HOH . N 6 HOH B 34 634 107 HOH HOH . N 6 HOH B 35 635 24 HOH HOH . N 6 HOH B 36 636 106 HOH HOH . N 6 HOH B 37 637 103 HOH HOH . N 6 HOH B 38 638 48 HOH HOH . N 6 HOH B 39 639 3 HOH HOH . N 6 HOH B 40 640 38 HOH HOH . N 6 HOH B 41 641 18 HOH HOH . N 6 HOH B 42 642 11 HOH HOH . N 6 HOH B 43 643 188 HOH HOH . N 6 HOH B 44 644 58 HOH HOH . N 6 HOH B 45 645 126 HOH HOH . N 6 HOH B 46 646 105 HOH HOH . N 6 HOH B 47 647 70 HOH HOH . N 6 HOH B 48 648 113 HOH HOH . N 6 HOH B 49 649 148 HOH HOH . N 6 HOH B 50 650 67 HOH HOH . N 6 HOH B 51 651 162 HOH HOH . N 6 HOH B 52 652 168 HOH HOH . N 6 HOH B 53 653 163 HOH HOH . N 6 HOH B 54 654 164 HOH HOH . N 6 HOH B 55 655 71 HOH HOH . N 6 HOH B 56 656 82 HOH HOH . N 6 HOH B 57 657 172 HOH HOH . N 6 HOH B 58 658 207 HOH HOH . N 6 HOH B 59 659 1 HOH HOH . N 6 HOH B 60 660 68 HOH HOH . N 6 HOH B 61 661 153 HOH HOH . N 6 HOH B 62 662 140 HOH HOH . N 6 HOH B 63 663 59 HOH HOH . N 6 HOH B 64 664 37 HOH HOH . N 6 HOH B 65 665 109 HOH HOH . N 6 HOH B 66 666 74 HOH HOH . N 6 HOH B 67 667 124 HOH HOH . N 6 HOH B 68 668 137 HOH HOH . N 6 HOH B 69 669 90 HOH HOH . N 6 HOH B 70 670 118 HOH HOH . N 6 HOH B 71 671 52 HOH HOH . N 6 HOH B 72 672 150 HOH HOH . N 6 HOH B 73 673 42 HOH HOH . N 6 HOH B 74 674 111 HOH HOH . N 6 HOH B 75 675 12 HOH HOH . N 6 HOH B 76 676 40 HOH HOH . N 6 HOH B 77 677 186 HOH HOH . N 6 HOH B 78 678 182 HOH HOH . N 6 HOH B 79 679 100 HOH HOH . N 6 HOH B 80 680 158 HOH HOH . N 6 HOH B 81 681 81 HOH HOH . N 6 HOH B 82 682 181 HOH HOH . N 6 HOH B 83 683 43 HOH HOH . N 6 HOH B 84 684 156 HOH HOH . N 6 HOH B 85 685 86 HOH HOH . N 6 HOH B 86 686 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ1 . . . F 4 21.777 16.948 -22.157 1 52.04 ? C1 UQ1 504 A 1 HETATM 2 O O1 UQ1 . . . F 4 21.982 16.382 -21.137 1 52.01 ? O1 UQ1 504 A 1 HETATM 3 C C2 UQ1 . . . F 4 20.374 17.456 -22.475 1 53.41 ? C2 UQ1 504 A 1 HETATM 4 O O2 UQ1 . . . F 4 19.334 17.237 -21.569 1 62.91 ? O2 UQ1 504 A 1 HETATM 5 C CM2 UQ1 . . . F 4 18.577 16.079 -21.818 1 66.97 ? CM2 UQ1 504 A 1 HETATM 6 C C3 UQ1 . . . F 4 20.109 18.192 -23.782 1 55.85 ? C3 UQ1 504 A 1 HETATM 7 O O3 UQ1 . . . F 4 18.828 18.658 -24.095 1 61.29 ? O3 UQ1 504 A 1 HETATM 8 C CM3 UQ1 . . . F 4 18.055 17.752 -24.832 1 63.08 ? CM3 UQ1 504 A 1 HETATM 9 C C4 UQ1 . . . F 4 21.238 18.428 -24.775 1 59.73 ? C4 UQ1 504 A 1 HETATM 10 O O4 UQ1 . . . F 4 21.001 19.007 -25.785 1 62.45 ? O4 UQ1 504 A 1 HETATM 11 C C5 UQ1 . . . F 4 22.652 17.926 -24.458 1 55.55 ? C5 UQ1 504 A 1 HETATM 12 C CM5 UQ1 . . . F 4 23.786 18.162 -25.453 1 50.42 ? CM5 UQ1 504 A 1 HETATM 13 C C6 UQ1 . . . F 4 22.921 17.191 -23.145 1 52.48 ? C6 UQ1 504 A 1 HETATM 14 C C7 UQ1 . . . F 4 24.325 16.687 -22.827 1 51.24 ? C7 UQ1 504 A 1 HETATM 15 C C8 UQ1 . . . F 4 24.42 15.191 -23.134 1 50.9 ? C8 UQ1 504 A 1 HETATM 16 C C9 UQ1 . . . F 4 25.547 14.684 -23.598 1 51.95 ? C9 UQ1 504 A 1 HETATM 17 C C10 UQ1 . . . F 4 25.654 13.193 -23.911 1 51.16 ? C10 UQ1 504 A 1 HETATM 18 C C11 UQ1 . . . F 4 26.749 15.593 -23.841 1 52.57 ? C11 UQ1 504 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #