data_6OID
#
_model_server_result.job_id            d_Y7YqPOMlyUM-k0MGwUvA 
_model_server_result.datetime_utc      '2024-11-23 22:17:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":301}' 
#
_entry.id    6OID 
#
_exptl.entry_id    6OID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OID 
_cell.length_a            158.86 
_cell.length_b            163.64 
_cell.length_c            70.72 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 32 1_555 B SG CYS 52 B CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf2 A SG CYS 256 A CYS 236 1_555 B SG CYS 256 B CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6OID 
_atom_sites.fract_transf_matrix[1][1]    0.006295 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 301 ADP ADP . 
D 3 SO4 A 1 302 401 SO4 SO4 . 
E 3 SO4 A 1 303 402 SO4 SO4 . 
F 3 SO4 A 1 304 403 SO4 SO4 . 
G 3 SO4 A 1 305 404 SO4 SO4 . 
H 3 SO4 A 1 306 405 SO4 SO4 . 
I 3 SO4 A 1 307 406 SO4 SO4 . 
J 3 SO4 A 1 308 407 SO4 SO4 . 
K 3 SO4 A 1 309 408 SO4 SO4 . 
L 3 SO4 A 1 310 409 SO4 SO4 . 
M 4 CL A 1 311 410 CL CL . 
N 5 EDO A 1 312 411 EDO EDO . 
O 5 EDO A 1 313 412 EDO EDO . 
P 5 EDO A 1 314 413 EDO EDO . 
Q 5 EDO A 1 315 414 EDO EDO . 
R 6 DMS A 1 316 415 DMS DMS . 
S 2 ADP B 1 301 301 ADP ADP . 
T 3 SO4 B 1 302 416 SO4 SO4 . 
U 3 SO4 B 1 303 417 SO4 SO4 . 
V 3 SO4 B 1 304 418 SO4 SO4 . 
W 3 SO4 B 1 305 419 SO4 SO4 . 
X 3 SO4 B 1 306 420 SO4 SO4 . 
Y 4 CL B 1 307 421 CL CL . 
Z 5 EDO B 1 308 422 EDO EDO . 
AA 6 DMS B 1 309 423 DMS DMS . 
BA 7 HOH A 1 401 30 HOH HOH . 
BA 7 HOH A 2 402 54 HOH HOH . 
BA 7 HOH A 3 403 2 HOH HOH . 
BA 7 HOH A 4 404 43 HOH HOH . 
BA 7 HOH A 5 405 33 HOH HOH . 
BA 7 HOH A 6 406 85 HOH HOH . 
BA 7 HOH A 7 407 5 HOH HOH . 
BA 7 HOH A 8 408 36 HOH HOH . 
BA 7 HOH A 9 409 51 HOH HOH . 
BA 7 HOH A 10 410 13 HOH HOH . 
BA 7 HOH A 11 411 7 HOH HOH . 
BA 7 HOH A 12 412 45 HOH HOH . 
BA 7 HOH A 13 413 62 HOH HOH . 
BA 7 HOH A 14 414 1 HOH HOH . 
BA 7 HOH A 15 415 84 HOH HOH . 
BA 7 HOH A 16 416 57 HOH HOH . 
BA 7 HOH A 17 417 79 HOH HOH . 
BA 7 HOH A 18 418 19 HOH HOH . 
BA 7 HOH A 19 419 52 HOH HOH . 
BA 7 HOH A 20 420 17 HOH HOH . 
BA 7 HOH A 21 421 20 HOH HOH . 
BA 7 HOH A 22 422 67 HOH HOH . 
BA 7 HOH A 23 423 38 HOH HOH . 
BA 7 HOH A 24 424 6 HOH HOH . 
BA 7 HOH A 25 425 34 HOH HOH . 
BA 7 HOH A 26 426 27 HOH HOH . 
BA 7 HOH A 27 427 37 HOH HOH . 
BA 7 HOH A 28 428 65 HOH HOH . 
BA 7 HOH A 29 429 39 HOH HOH . 
BA 7 HOH A 30 430 8 HOH HOH . 
BA 7 HOH A 31 431 63 HOH HOH . 
BA 7 HOH A 32 432 44 HOH HOH . 
BA 7 HOH A 33 433 21 HOH HOH . 
BA 7 HOH A 34 434 26 HOH HOH . 
BA 7 HOH A 35 435 80 HOH HOH . 
BA 7 HOH A 36 436 74 HOH HOH . 
BA 7 HOH A 37 437 60 HOH HOH . 
BA 7 HOH A 38 438 24 HOH HOH . 
BA 7 HOH A 39 439 61 HOH HOH . 
BA 7 HOH A 40 440 48 HOH HOH . 
BA 7 HOH A 41 441 56 HOH HOH . 
BA 7 HOH A 42 442 64 HOH HOH . 
BA 7 HOH A 43 443 41 HOH HOH . 
BA 7 HOH A 44 444 78 HOH HOH . 
BA 7 HOH A 45 445 59 HOH HOH . 
CA 7 HOH B 1 401 77 HOH HOH . 
CA 7 HOH B 2 402 35 HOH HOH . 
CA 7 HOH B 3 403 42 HOH HOH . 
CA 7 HOH B 4 404 40 HOH HOH . 
CA 7 HOH B 5 405 31 HOH HOH . 
CA 7 HOH B 6 406 4 HOH HOH . 
CA 7 HOH B 7 407 70 HOH HOH . 
CA 7 HOH B 8 408 47 HOH HOH . 
CA 7 HOH B 9 409 87 HOH HOH . 
CA 7 HOH B 10 410 28 HOH HOH . 
CA 7 HOH B 11 411 15 HOH HOH . 
CA 7 HOH B 12 412 9 HOH HOH . 
CA 7 HOH B 13 413 58 HOH HOH . 
CA 7 HOH B 14 414 49 HOH HOH . 
CA 7 HOH B 15 415 16 HOH HOH . 
CA 7 HOH B 16 416 22 HOH HOH . 
CA 7 HOH B 17 417 11 HOH HOH . 
CA 7 HOH B 18 418 12 HOH HOH . 
CA 7 HOH B 19 419 72 HOH HOH . 
CA 7 HOH B 20 420 29 HOH HOH . 
CA 7 HOH B 21 421 83 HOH HOH . 
CA 7 HOH B 22 422 88 HOH HOH . 
CA 7 HOH B 23 423 3 HOH HOH . 
CA 7 HOH B 24 424 10 HOH HOH . 
CA 7 HOH B 25 425 18 HOH HOH . 
CA 7 HOH B 26 426 73 HOH HOH . 
CA 7 HOH B 27 427 14 HOH HOH . 
CA 7 HOH B 28 428 25 HOH HOH . 
CA 7 HOH B 29 429 55 HOH HOH . 
CA 7 HOH B 30 430 50 HOH HOH . 
CA 7 HOH B 31 431 82 HOH HOH . 
CA 7 HOH B 32 432 71 HOH HOH . 
CA 7 HOH B 33 433 66 HOH HOH . 
CA 7 HOH B 34 434 32 HOH HOH . 
CA 7 HOH B 35 435 23 HOH HOH . 
CA 7 HOH B 36 436 75 HOH HOH . 
CA 7 HOH B 37 437 53 HOH HOH . 
CA 7 HOH B 38 438 46 HOH HOH . 
CA 7 HOH B 39 439 68 HOH HOH . 
CA 7 HOH B 40 440 89 HOH HOH . 
CA 7 HOH B 41 441 69 HOH HOH . 
CA 7 HOH B 42 442 76 HOH HOH . 
CA 7 HOH B 43 443 86 HOH HOH . 
CA 7 HOH B 44 444 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . S 2 58.956 15.73 35.61 1 72.15 ? PB ADP 301 B 1 
HETATM 2 O O1B ADP . . . S 2 58.855 14.734 34.482 1 74.18 ? O1B ADP 301 B 1 
HETATM 3 O O2B ADP . . . S 2 60.204 15.559 36.445 1 70.07 ? O2B ADP 301 B 1 
HETATM 4 O O3B ADP . . . S 2 58.665 17.158 35.206 1 80.45 ? O3B ADP 301 B 1 
HETATM 5 P PA ADP . . . S 2 56.24 15.874 36.455 1 64.13 ? PA ADP 301 B 1 
HETATM 6 O O1A ADP . . . S 2 56.011 16.477 35.083 1 80.42 ? O1A ADP 301 B 1 
HETATM 7 O O2A ADP . . . S 2 55.937 16.643 37.707 1 62.82 ? O2A ADP 301 B 1 
HETATM 8 O O3A ADP . . . S 2 57.748 15.33 36.6 1 69.76 ? O3A ADP 301 B 1 
HETATM 9 O O5' ADP . . . S 2 55.437 14.496 36.578 1 60.75 ? O5' ADP 301 B 1 
HETATM 10 C C5' ADP . . . S 2 55.371 13.492 35.58 1 59.97 ? C5' ADP 301 B 1 
HETATM 11 C C4' ADP . . . S 2 54.09 12.683 35.836 1 67.53 ? C4' ADP 301 B 1 
HETATM 12 O O4' ADP . . . S 2 53.957 12.338 37.214 1 74.42 ? O4' ADP 301 B 1 
HETATM 13 C C3' ADP . . . S 2 52.823 13.451 35.508 1 69.1 ? C3' ADP 301 B 1 
HETATM 14 O O3' ADP . . . S 2 51.918 12.48 34.982 1 72.37 ? O3' ADP 301 B 1 
HETATM 15 C C2' ADP . . . S 2 52.259 13.938 36.818 1 67.53 ? C2' ADP 301 B 1 
HETATM 16 O O2' ADP . . . S 2 50.84 13.892 36.79 1 66.76 ? O2' ADP 301 B 1 
HETATM 17 C C1' ADP . . . S 2 52.728 12.862 37.755 1 71.63 ? C1' ADP 301 B 1 
HETATM 18 N N9 ADP . . . S 2 53.053 13.329 39.112 1 61.4 ? N9 ADP 301 B 1 
HETATM 19 C C8 ADP . . . S 2 53.976 14.259 39.423 1 51.85 ? C8 ADP 301 B 1 
HETATM 20 N N7 ADP . . . S 2 54.065 14.408 40.763 1 50.54 ? N7 ADP 301 B 1 
HETATM 21 C C5 ADP . . . S 2 53.186 13.549 41.313 1 46.71 ? C5 ADP 301 B 1 
HETATM 22 C C6 ADP . . . S 2 52.779 13.19 42.675 1 41.04 ? C6 ADP 301 B 1 
HETATM 23 N N6 ADP . . . S 2 53.34 13.807 43.736 1 47.28 ? N6 ADP 301 B 1 
HETATM 24 N N1 ADP . . . S 2 51.822 12.248 42.814 1 44.64 ? N1 ADP 301 B 1 
HETATM 25 C C2 ADP . . . S 2 51.255 11.627 41.767 1 40.24 ? C2 ADP 301 B 1 
HETATM 26 N N3 ADP . . . S 2 51.588 11.905 40.501 1 54.44 ? N3 ADP 301 B 1 
HETATM 27 C C4 ADP . . . S 2 52.524 12.837 40.222 1 51.54 ? C4 ADP 301 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#