data_6OIF # _model_server_result.job_id 7Th2QpbJko4EWz0EryOTtQ _model_server_result.datetime_utc '2025-01-05 04:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":401}' # _entry.id 6OIF # _exptl.entry_id 6OIF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 25 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OIF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 25-meric _pdbx_struct_assembly.oligomeric_count 25 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N ? 2 WA N N ? 2 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 230 A CYS 280 1_555 A SG CYS 269 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 230 B CYS 280 1_555 B SG CYS 269 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 C SG CYS 230 C CYS 280 1_555 C SG CYS 269 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 D SG CYS 230 D CYS 280 1_555 D SG CYS 269 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 E SG CYS 230 E CYS 280 1_555 E SG CYS 269 E CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 F SG CYS 230 F CYS 280 1_555 F SG CYS 269 F CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 G SG CYS 230 G CYS 280 1_555 G SG CYS 269 G CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 H SG CYS 230 H CYS 280 1_555 H SG CYS 269 H CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 I SG CYS 230 I CYS 280 1_555 I SG CYS 269 I CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 J SG CYS 230 J CYS 280 1_555 J SG CYS 269 J CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf11 K SG CYS 230 K CYS 280 1_555 K SG CYS 269 K CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf12 L SG CYS 230 L CYS 280 1_555 L SG CYS 269 L CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf13 M SG CYS 230 M CYS 280 1_555 M SG CYS 269 M CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf14 N SG CYS 230 N CYS 280 1_555 N SG CYS 269 N CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf15 O SG CYS 230 O CYS 280 1_555 O SG CYS 269 O CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf16 P SG CYS 230 P CYS 280 1_555 P SG CYS 269 P CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf17 Q SG CYS 230 Q CYS 280 1_555 Q SG CYS 269 Q CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf18 R SG CYS 230 R CYS 280 1_555 R SG CYS 269 R CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf19 S SG CYS 230 S CYS 280 1_555 S SG CYS 269 S CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf20 T SG CYS 230 T CYS 280 1_555 T SG CYS 269 T CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf21 U SG CYS 230 U CYS 280 1_555 U SG CYS 269 U CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf22 V SG CYS 230 V CYS 280 1_555 V SG CYS 269 V CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf23 W SG CYS 230 W CYS 280 1_555 W SG CYS 269 W CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf24 X SG CYS 230 X CYS 280 1_555 X SG CYS 269 X CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf25 Y SG CYS 230 Y CYS 280 1_555 Y SG CYS 269 Y CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6OIF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Z 2 ATP A 1 401 333 ATP ATP . AA 2 ATP B 1 401 333 ATP ATP . BA 2 ATP C 1 401 333 ATP ATP . CA 2 ATP D 1 401 333 ATP ATP . DA 2 ATP E 1 401 333 ATP ATP . EA 2 ATP F 1 401 333 ATP ATP . FA 2 ATP G 1 401 333 ATP ATP . GA 2 ATP H 1 401 333 ATP ATP . HA 2 ATP I 1 401 333 ATP ATP . IA 2 ATP J 1 401 333 ATP ATP . JA 2 ATP K 1 401 333 ATP ATP . KA 2 ATP L 1 401 333 ATP ATP . LA 2 ATP M 1 401 333 ATP ATP . MA 2 ATP N 1 401 333 ATP ATP . NA 2 ATP O 1 401 333 ATP ATP . OA 2 ATP P 1 401 333 ATP ATP . PA 2 ATP Q 1 401 333 ATP ATP . QA 2 ATP R 1 401 333 ATP ATP . RA 2 ATP S 1 401 333 ATP ATP . SA 2 ATP T 1 401 333 ATP ATP . TA 2 ATP U 1 401 333 ATP ATP . UA 2 ATP V 1 401 333 ATP ATP . VA 2 ATP W 1 401 333 ATP ATP . WA 2 ATP X 1 401 333 ATP ATP . XA 2 ATP X 1 402 333 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . LA 2 45.19 5.274 -48.923 1 100 ? PG ATP 401 M 1 HETATM 2 O O1G ATP . . . LA 2 45.327 4.008 -48.116 1 100 ? O1G ATP 401 M 1 HETATM 3 O O2G ATP . . . LA 2 44.535 6.412 -48.185 1 100 -1 O2G ATP 401 M 1 HETATM 4 O O3G ATP . . . LA 2 44.713 5.075 -50.339 1 100 ? O3G ATP 401 M 1 HETATM 5 P PB ATP . . . LA 2 47.764 4.694 -49.683 1 100 ? PB ATP 401 M 1 HETATM 6 O O1B ATP . . . LA 2 48 3.638 -48.635 1 100 -1 O1B ATP 401 M 1 HETATM 7 O O2B ATP . . . LA 2 47.303 4.304 -51.056 1 100 ? O2B ATP 401 M 1 HETATM 8 O O3B ATP . . . LA 2 46.711 5.753 -49.099 1 100 ? O3B ATP 401 M 1 HETATM 9 P PA ATP . . . LA 2 49.374 6.166 -51.316 1 100 ? PA ATP 401 M 1 HETATM 10 O O1A ATP . . . LA 2 49.889 5.061 -52.199 1 100 -1 O1A ATP 401 M 1 HETATM 11 O O2A ATP . . . LA 2 48.109 6.878 -51.724 1 100 ? O2A ATP 401 M 1 HETATM 12 O O3A ATP . . . LA 2 49.116 5.532 -49.868 1 100 ? O3A ATP 401 M 1 HETATM 13 O O5' ATP . . . LA 2 50.552 7.238 -51.079 1 100 ? O5' ATP 401 M 1 HETATM 14 C C5' ATP . . . LA 2 50.284 8.521 -50.516 1 100 ? C5' ATP 401 M 1 HETATM 15 C C4' ATP . . . LA 2 51.37 9.522 -50.906 1 100 ? C4' ATP 401 M 1 HETATM 16 O O4' ATP . . . LA 2 52.51 9.343 -50.066 1 100 ? O4' ATP 401 M 1 HETATM 17 C C3' ATP . . . LA 2 51.837 9.384 -52.349 1 100 ? C3' ATP 401 M 1 HETATM 18 O O3' ATP . . . LA 2 51.804 10.67 -52.974 1 100 ? O3' ATP 401 M 1 HETATM 19 C C2' ATP . . . LA 2 53.233 8.783 -52.264 1 100 ? C2' ATP 401 M 1 HETATM 20 O O2' ATP . . . LA 2 54.192 9.344 -53.168 1 100 ? O2' ATP 401 M 1 HETATM 21 C C1' ATP . . . LA 2 53.671 9.04 -50.837 1 100 ? C1' ATP 401 M 1 HETATM 22 N N9 ATP . . . LA 2 54.285 7.836 -50.254 1 100 ? N9 ATP 401 M 1 HETATM 23 C C8 ATP . . . LA 2 53.59 6.848 -49.673 1 100 ? C8 ATP 401 M 1 HETATM 24 N N7 ATP . . . LA 2 54.424 5.882 -49.222 1 100 ? N7 ATP 401 M 1 HETATM 25 C C5 ATP . . . LA 2 55.675 6.264 -49.51 1 100 ? C5 ATP 401 M 1 HETATM 26 C C6 ATP . . . LA 2 57.021 5.705 -49.304 1 100 ? C6 ATP 401 M 1 HETATM 27 N N6 ATP . . . LA 2 57.142 4.517 -48.68 1 100 ? N6 ATP 401 M 1 HETATM 28 N N1 ATP . . . LA 2 58.078 6.412 -49.754 1 100 ? N1 ATP 401 M 1 HETATM 29 C C2 ATP . . . LA 2 57.919 7.598 -50.375 1 100 ? C2 ATP 401 M 1 HETATM 30 N N3 ATP . . . LA 2 56.719 8.164 -50.591 1 100 ? N3 ATP 401 M 1 HETATM 31 C C4 ATP . . . LA 2 55.583 7.55 -50.201 1 100 ? C4 ATP 401 M 1 HETATM 32 H "H5'1" ATP . . . LA 2 50.248 8.431 -49.428 1 100 ? "H5'1" ATP 401 M 1 HETATM 33 H "H5'2" ATP . . . LA 2 49.314 8.886 -50.855 1 100 ? "H5'2" ATP 401 M 1 HETATM 34 H H4' ATP . . . LA 2 50.972 10.535 -50.768 1 100 ? H4' ATP 401 M 1 HETATM 35 H H3' ATP . . . LA 2 51.184 8.697 -52.902 1 100 ? H3' ATP 401 M 1 HETATM 36 H HO3' ATP . . . LA 2 52.007 10.577 -53.914 1 100 ? HO3' ATP 401 M 1 HETATM 37 H H2' ATP . . . LA 2 53.164 7.698 -52.411 1 100 ? H2' ATP 401 M 1 HETATM 38 H HO2' ATP . . . LA 2 54.185 10.308 -53.123 1 100 ? HO2' ATP 401 M 1 HETATM 39 H H1' ATP . . . LA 2 54.379 9.878 -50.812 1 100 ? H1' ATP 401 M 1 HETATM 40 H H8 ATP . . . LA 2 52.513 6.824 -49.588 1 100 ? H8 ATP 401 M 1 HETATM 41 H HN61 ATP . . . LA 2 56.308 4.042 -48.376 1 100 ? HN61 ATP 401 M 1 HETATM 42 H HN62 ATP . . . LA 2 58.044 4.102 -48.518 1 100 ? HN62 ATP 401 M 1 HETATM 43 H H2 ATP . . . LA 2 58.798 8.126 -50.716 1 100 ? H2 ATP 401 M 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 108 _model_server_stats.create_model_time_ms 309 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #