data_6OIF # _model_server_result.job_id 7LvqT1d5upC3GMSp68lOVg _model_server_result.datetime_utc '2025-01-05 04:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":401}' # _entry.id 6OIF # _exptl.entry_id 6OIF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 25 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OIF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 25-meric _pdbx_struct_assembly.oligomeric_count 25 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N ? 2 WA N N ? 2 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 230 A CYS 280 1_555 A SG CYS 269 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 230 B CYS 280 1_555 B SG CYS 269 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 C SG CYS 230 C CYS 280 1_555 C SG CYS 269 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 D SG CYS 230 D CYS 280 1_555 D SG CYS 269 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 E SG CYS 230 E CYS 280 1_555 E SG CYS 269 E CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 F SG CYS 230 F CYS 280 1_555 F SG CYS 269 F CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 G SG CYS 230 G CYS 280 1_555 G SG CYS 269 G CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 H SG CYS 230 H CYS 280 1_555 H SG CYS 269 H CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 I SG CYS 230 I CYS 280 1_555 I SG CYS 269 I CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 J SG CYS 230 J CYS 280 1_555 J SG CYS 269 J CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf11 K SG CYS 230 K CYS 280 1_555 K SG CYS 269 K CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf12 L SG CYS 230 L CYS 280 1_555 L SG CYS 269 L CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf13 M SG CYS 230 M CYS 280 1_555 M SG CYS 269 M CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf14 N SG CYS 230 N CYS 280 1_555 N SG CYS 269 N CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf15 O SG CYS 230 O CYS 280 1_555 O SG CYS 269 O CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf16 P SG CYS 230 P CYS 280 1_555 P SG CYS 269 P CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf17 Q SG CYS 230 Q CYS 280 1_555 Q SG CYS 269 Q CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf18 R SG CYS 230 R CYS 280 1_555 R SG CYS 269 R CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf19 S SG CYS 230 S CYS 280 1_555 S SG CYS 269 S CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf20 T SG CYS 230 T CYS 280 1_555 T SG CYS 269 T CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf21 U SG CYS 230 U CYS 280 1_555 U SG CYS 269 U CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf22 V SG CYS 230 V CYS 280 1_555 V SG CYS 269 V CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf23 W SG CYS 230 W CYS 280 1_555 W SG CYS 269 W CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf24 X SG CYS 230 X CYS 280 1_555 X SG CYS 269 X CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf25 Y SG CYS 230 Y CYS 280 1_555 Y SG CYS 269 Y CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6OIF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Z 2 ATP A 1 401 333 ATP ATP . AA 2 ATP B 1 401 333 ATP ATP . BA 2 ATP C 1 401 333 ATP ATP . CA 2 ATP D 1 401 333 ATP ATP . DA 2 ATP E 1 401 333 ATP ATP . EA 2 ATP F 1 401 333 ATP ATP . FA 2 ATP G 1 401 333 ATP ATP . GA 2 ATP H 1 401 333 ATP ATP . HA 2 ATP I 1 401 333 ATP ATP . IA 2 ATP J 1 401 333 ATP ATP . JA 2 ATP K 1 401 333 ATP ATP . KA 2 ATP L 1 401 333 ATP ATP . LA 2 ATP M 1 401 333 ATP ATP . MA 2 ATP N 1 401 333 ATP ATP . NA 2 ATP O 1 401 333 ATP ATP . OA 2 ATP P 1 401 333 ATP ATP . PA 2 ATP Q 1 401 333 ATP ATP . QA 2 ATP R 1 401 333 ATP ATP . RA 2 ATP S 1 401 333 ATP ATP . SA 2 ATP T 1 401 333 ATP ATP . TA 2 ATP U 1 401 333 ATP ATP . UA 2 ATP V 1 401 333 ATP ATP . VA 2 ATP W 1 401 333 ATP ATP . WA 2 ATP X 1 401 333 ATP ATP . XA 2 ATP X 1 402 333 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . QA 2 11.134 -44.113 34.012 1 100 ? PG ATP 401 R 1 HETATM 2 O O1G ATP . . . QA 2 9.896 -44.414 34.819 1 100 ? O1G ATP 401 R 1 HETATM 3 O O2G ATP . . . QA 2 12.177 -43.315 34.75 1 100 -1 O2G ATP 401 R 1 HETATM 4 O O3G ATP . . . QA 2 10.874 -43.667 32.596 1 100 ? O3G ATP 401 R 1 HETATM 5 P PB ATP . . . QA 2 10.895 -46.741 33.252 1 100 ? PB ATP 401 R 1 HETATM 6 O O1B ATP . . . QA 2 9.879 -47.113 34.3 1 100 -1 O1B ATP 401 R 1 HETATM 7 O O2B ATP . . . QA 2 10.449 -46.335 31.879 1 100 ? O2B ATP 401 R 1 HETATM 8 O O3B ATP . . . QA 2 11.807 -45.559 33.836 1 100 ? O3B ATP 401 R 1 HETATM 9 P PA ATP . . . QA 2 12.565 -48.145 31.619 1 100 ? PA ATP 401 R 1 HETATM 10 O O1A ATP . . . QA 2 11.537 -48.8 30.736 1 100 -1 O1A ATP 401 R 1 HETATM 11 O O2A ATP . . . QA 2 13.106 -46.797 31.211 1 100 ? O2A ATP 401 R 1 HETATM 12 O O3A ATP . . . QA 2 11.903 -47.972 33.067 1 100 ? O3A ATP 401 R 1 HETATM 13 O O5' ATP . . . QA 2 13.781 -49.173 31.856 1 100 ? O5' ATP 401 R 1 HETATM 14 C C5' ATP . . . QA 2 15.019 -48.74 32.419 1 100 ? C5' ATP 401 R 1 HETATM 15 C C4' ATP . . . QA 2 16.153 -49.685 32.029 1 100 ? C4' ATP 401 R 1 HETATM 16 O O4' ATP . . . QA 2 16.125 -50.838 32.869 1 100 ? O4' ATP 401 R 1 HETATM 17 C C3' ATP . . . QA 2 16.077 -50.166 30.586 1 100 ? C3' ATP 401 R 1 HETATM 18 O O3' ATP . . . QA 2 17.348 -49.965 29.961 1 100 ? O3' ATP 401 R 1 HETATM 19 C C2' ATP . . . QA 2 15.664 -51.628 30.671 1 100 ? C2' ATP 401 R 1 HETATM 20 O O2' ATP . . . QA 2 16.345 -52.506 29.767 1 100 ? O2' ATP 401 R 1 HETATM 21 C C1' ATP . . . QA 2 15.976 -52.029 32.098 1 100 ? C1' ATP 401 R 1 HETATM 22 N N9 ATP . . . QA 2 14.863 -52.796 32.681 1 100 ? N9 ATP 401 R 1 HETATM 23 C C8 ATP . . . QA 2 13.793 -52.236 33.262 1 100 ? C8 ATP 401 R 1 HETATM 24 N N7 ATP . . . QA 2 12.944 -53.188 33.713 1 100 ? N7 ATP 401 R 1 HETATM 25 C C5 ATP . . . QA 2 13.486 -54.38 33.425 1 100 ? C5 ATP 401 R 1 HETATM 26 C C6 ATP . . . QA 2 13.107 -55.787 33.631 1 100 ? C6 ATP 401 R 1 HETATM 27 N N6 ATP . . . QA 2 11.945 -56.062 34.255 1 100 ? N6 ATP 401 R 1 HETATM 28 N N1 ATP . . . QA 2 13.947 -56.743 33.181 1 100 ? N1 ATP 401 R 1 HETATM 29 C C2 ATP . . . QA 2 15.102 -56.429 32.56 1 100 ? C2 ATP 401 R 1 HETATM 30 N N3 ATP . . . QA 2 15.506 -55.166 32.344 1 100 ? N3 ATP 401 R 1 HETATM 31 C C4 ATP . . . QA 2 14.748 -54.119 32.734 1 100 ? C4 ATP 401 R 1 HETATM 32 H "H5'1" ATP . . . QA 2 14.925 -48.715 33.507 1 100 ? "H5'1" ATP 401 R 1 HETATM 33 H "H5'2" ATP . . . QA 2 15.254 -47.73 32.08 1 100 ? "H5'2" ATP 401 R 1 HETATM 34 H H4' ATP . . . QA 2 17.106 -49.158 32.167 1 100 ? H4' ATP 401 R 1 HETATM 35 H H3' ATP . . . QA 2 15.311 -49.609 30.033 1 100 ? H3' ATP 401 R 1 HETATM 36 H HO3' ATP . . . QA 2 17.283 -50.178 29.021 1 100 ? HO3' ATP 401 R 1 HETATM 37 H H2' ATP . . . QA 2 14.58 -51.702 30.524 1 100 ? H2' ATP 401 R 1 HETATM 38 H HO2' ATP . . . QA 2 17.3 -52.374 29.812 1 100 ? HO2' ATP 401 R 1 HETATM 39 H H1' ATP . . . QA 2 16.899 -52.622 32.123 1 100 ? H1' ATP 401 R 1 HETATM 40 H H8 ATP . . . QA 2 13.628 -51.171 33.347 1 100 ? H8 ATP 401 R 1 HETATM 41 H HN61 ATP . . . QA 2 11.366 -55.297 34.559 1 100 ? HN61 ATP 401 R 1 HETATM 42 H HN62 ATP . . . QA 2 11.652 -57.01 34.417 1 100 ? HN62 ATP 401 R 1 HETATM 43 H H2 ATP . . . QA 2 15.74 -57.232 32.219 1 100 ? H2 ATP 401 R 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 433 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #