data_6OIF
#
_model_server_result.job_id            vJgk7TD-LK5yW3p0BsxU6w 
_model_server_result.datetime_utc      '2025-01-05 04:17:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oif 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":401}' 
#
_entry.id    6OIF 
#
_exptl.entry_id    6OIF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    25 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OIF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OIF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    25-meric 
_pdbx_struct_assembly.oligomeric_count      25 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 NA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 TA N N 
? 2 UA N N 
? 2 VA N N 
? 2 WA N N 
? 2 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 230 A CYS 280 1_555 A SG CYS 269 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 B SG CYS 230 B CYS 280 1_555 B SG CYS 269 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 C SG CYS 230 C CYS 280 1_555 C SG CYS 269 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 D SG CYS 230 D CYS 280 1_555 D SG CYS 269 D CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 E SG CYS 230 E CYS 280 1_555 E SG CYS 269 E CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 F SG CYS 230 F CYS 280 1_555 F SG CYS 269 F CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 G SG CYS 230 G CYS 280 1_555 G SG CYS 269 G CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 H SG CYS 230 H CYS 280 1_555 H SG CYS 269 H CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf9 I SG CYS 230 I CYS 280 1_555 I SG CYS 269 I CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf10 J SG CYS 230 J CYS 280 1_555 J SG CYS 269 J CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf11 K SG CYS 230 K CYS 280 1_555 K SG CYS 269 K CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf12 L SG CYS 230 L CYS 280 1_555 L SG CYS 269 L CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf13 M SG CYS 230 M CYS 280 1_555 M SG CYS 269 M CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf14 N SG CYS 230 N CYS 280 1_555 N SG CYS 269 N CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf15 O SG CYS 230 O CYS 280 1_555 O SG CYS 269 O CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf16 P SG CYS 230 P CYS 280 1_555 P SG CYS 269 P CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf17 Q SG CYS 230 Q CYS 280 1_555 Q SG CYS 269 Q CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf18 R SG CYS 230 R CYS 280 1_555 R SG CYS 269 R CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf19 S SG CYS 230 S CYS 280 1_555 S SG CYS 269 S CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf20 T SG CYS 230 T CYS 280 1_555 T SG CYS 269 T CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf21 U SG CYS 230 U CYS 280 1_555 U SG CYS 269 U CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf22 V SG CYS 230 V CYS 280 1_555 V SG CYS 269 V CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf23 W SG CYS 230 W CYS 280 1_555 W SG CYS 269 W CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf24 X SG CYS 230 X CYS 280 1_555 X SG CYS 269 X CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf25 Y SG CYS 230 Y CYS 280 1_555 Y SG CYS 269 Y CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6OIF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Z 2 ATP A 1 401 333 ATP ATP . 
AA 2 ATP B 1 401 333 ATP ATP . 
BA 2 ATP C 1 401 333 ATP ATP . 
CA 2 ATP D 1 401 333 ATP ATP . 
DA 2 ATP E 1 401 333 ATP ATP . 
EA 2 ATP F 1 401 333 ATP ATP . 
FA 2 ATP G 1 401 333 ATP ATP . 
GA 2 ATP H 1 401 333 ATP ATP . 
HA 2 ATP I 1 401 333 ATP ATP . 
IA 2 ATP J 1 401 333 ATP ATP . 
JA 2 ATP K 1 401 333 ATP ATP . 
KA 2 ATP L 1 401 333 ATP ATP . 
LA 2 ATP M 1 401 333 ATP ATP . 
MA 2 ATP N 1 401 333 ATP ATP . 
NA 2 ATP O 1 401 333 ATP ATP . 
OA 2 ATP P 1 401 333 ATP ATP . 
PA 2 ATP Q 1 401 333 ATP ATP . 
QA 2 ATP R 1 401 333 ATP ATP . 
RA 2 ATP S 1 401 333 ATP ATP . 
SA 2 ATP T 1 401 333 ATP ATP . 
TA 2 ATP U 1 401 333 ATP ATP . 
UA 2 ATP V 1 401 333 ATP ATP . 
VA 2 ATP W 1 401 333 ATP ATP . 
WA 2 ATP X 1 401 333 ATP ATP . 
XA 2 ATP X 1 402 333 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . VA 2 -40.945 19.835 -76.568 1 100 ? PG ATP 401 W 1 
HETATM 2 O O1G ATP . . . VA 2 -40.38 20.976 -75.761 1 100 ? O1G ATP 401 W 1 
HETATM 3 O O2G ATP . . . VA 2 -41.004 18.522 -75.83 1 100 -1 O2G ATP 401 W 1 
HETATM 4 O O3G ATP . . . VA 2 -40.436 19.746 -77.984 1 100 ? O3G ATP 401 W 1 
HETATM 5 P PB ATP . . . VA 2 -42.804 21.707 -77.328 1 100 ? PB ATP 401 W 1 
HETATM 6 O O1B ATP . . . VA 2 -42.437 22.724 -76.28 1 100 -1 O1B ATP 401 W 1 
HETATM 7 O O2B ATP . . . VA 2 -42.207 21.788 -78.701 1 100 ? O2B ATP 401 W 1 
HETATM 8 O O3B ATP . . . VA 2 -42.485 20.248 -76.744 1 100 ? O3B ATP 401 W 1 
HETATM 9 P PA ATP . . . VA 2 -44.953 21.331 -78.961 1 100 ? PA ATP 401 W 1 
HETATM 10 O O1A ATP . . . VA 2 -44.794 22.539 -79.844 1 100 -1 O1A ATP 401 W 1 
HETATM 11 O O2A ATP . . . VA 2 -44.269 20.05 -79.369 1 100 ? O2A ATP 401 W 1 
HETATM 12 O O3A ATP . . . VA 2 -44.395 21.726 -77.513 1 100 ? O3A ATP 401 W 1 
HETATM 13 O O5' ATP . . . VA 2 -46.523 21.06 -78.724 1 100 ? O5' ATP 401 W 1 
HETATM 14 C C5' ATP . . . VA 2 -46.987 19.833 -78.161 1 100 ? C5' ATP 401 W 1 
HETATM 15 C C4' ATP . . . VA 2 -48.44 19.573 -78.551 1 100 ? C4' ATP 401 W 1 
HETATM 16 O O4' ATP . . . VA 2 -49.305 20.336 -77.711 1 100 ? O4' ATP 401 W 1 
HETATM 17 C C3' ATP . . . VA 2 -48.76 19.94 -79.994 1 100 ? C3' ATP 401 W 1 
HETATM 18 O O3' ATP . . . VA 2 -49.423 18.837 -80.619 1 100 ? O3' ATP 401 W 1 
HETATM 19 C C2' ATP . . . VA 2 -49.614 21.197 -79.909 1 100 ? C2' ATP 401 W 1 
HETATM 20 O O2' ATP . . . VA 2 -50.724 21.239 -80.813 1 100 ? O2' ATP 401 W 1 
HETATM 21 C C1' ATP . . . VA 2 -50.121 21.215 -78.482 1 100 ? C1' ATP 401 W 1 
HETATM 22 N N9 ATP . . . VA 2 -49.993 22.561 -77.899 1 100 ? N9 ATP 401 W 1 
HETATM 23 C C8 ATP . . . VA 2 -48.876 23.021 -77.318 1 100 ? C8 ATP 401 W 1 
HETATM 24 N N7 ATP . . . VA 2 -49.06 24.283 -76.867 1 100 ? N7 ATP 401 W 1 
HETATM 25 C C5 ATP . . . VA 2 -50.321 24.633 -77.155 1 100 ? C5 ATP 401 W 1 
HETATM 26 C C6 ATP . . . VA 2 -51.155 25.829 -76.949 1 100 ? C6 ATP 401 W 1 
HETATM 27 N N6 ATP . . . VA 2 -50.619 26.896 -76.325 1 100 ? N6 ATP 401 W 1 
HETATM 28 N N1 ATP . . . VA 2 -52.427 25.8 -77.399 1 100 ? N1 ATP 401 W 1 
HETATM 29 C C2 ATP . . . VA 2 -52.93 24.714 -78.02 1 100 ? C2 ATP 401 W 1 
HETATM 30 N N3 ATP . . . VA 2 -52.222 23.592 -78.236 1 100 ? N3 ATP 401 W 1 
HETATM 31 C C4 ATP . . . VA 2 -50.933 23.5 -77.846 1 100 ? C4 ATP 401 W 1 
HETATM 32 H "H5'1" ATP . . . VA 2 -46.907 19.89 -77.073 1 100 ? "H5'1" ATP 401 W 1 
HETATM 33 H "H5'2" ATP . . . VA 2 -46.365 19.004 -78.5 1 100 ? "H5'2" ATP 401 W 1 
HETATM 34 H H4' ATP . . . VA 2 -48.649 18.504 -78.413 1 100 ? H4' ATP 401 W 1 
HETATM 35 H H3' ATP . . . VA 2 -47.841 20.168 -80.547 1 100 ? H3' ATP 401 W 1 
HETATM 36 H HO3' ATP . . . VA 2 -49.544 19.025 -81.559 1 100 ? HO3' ATP 401 W 1 
HETATM 37 H H2' ATP . . . VA 2 -48.973 22.074 -80.056 1 100 ? H2' ATP 401 W 1 
HETATM 38 H HO2' ATP . . . VA 2 -51.237 20.423 -80.768 1 100 ? HO2' ATP 401 W 1 
HETATM 39 H H1' ATP . . . VA 2 -51.169 20.889 -78.457 1 100 ? H1' ATP 401 W 1 
HETATM 40 H H8 ATP . . . VA 2 -47.954 22.462 -77.233 1 100 ? H8 ATP 401 W 1 
HETATM 41 H HN61 ATP . . . VA 2 -49.66 26.847 -76.021 1 100 ? HN61 ATP 401 W 1 
HETATM 42 H HN62 ATP . . . VA 2 -51.156 27.729 -76.163 1 100 ? HN62 ATP 401 W 1 
HETATM 43 H H2 ATP . . . VA 2 -53.954 24.742 -78.361 1 100 ? H2 ATP 401 W 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    125 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#