data_6OIW
#
_model_server_result.job_id            NV8-H8Is0dWlbmGj1l_Vaw 
_model_server_result.datetime_utc      '2024-11-21 13:21:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oiw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":602}' 
#
_entry.id    6OIW 
#
_exptl.entry_id    6OIW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-deoxyguanosine-5'-O-(1-thiotriphosphate)" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OIW 
_cell.length_a            191.24 
_cell.length_b            191.24 
_cell.length_c            298.61 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OIW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
? 4 M N N 
? 4 O N N 
? 4 R N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 69 A HIS 69 1_555 H MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc2 A NE2 HIS 117 A HIS 117 1_555 H MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc3 A OD1 ASP 268 A ASP 268 1_555 H MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc4 A OD1 ASP 269 A ASP 269 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc5 G MG MG . A MG 601 1_555 I O2B T8T . A T8T 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc6 B NE2 HIS 117 B HIS 117 1_555 J MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc7 B OD1 ASP 268 B ASP 268 1_555 J MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc8 C NE2 HIS 117 C HIS 117 1_555 L MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc9 C OD1 ASP 268 C ASP 268 1_555 L MN MN . C MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc10 D NE2 HIS 117 D HIS 117 1_555 N MN MN . D MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc11 D OD1 ASP 268 D ASP 268 1_555 N MN MN . D MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc12 E NE2 HIS 117 E HIS 117 1_555 Q MN MN . E MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc13 E OD1 ASP 268 E ASP 268 1_555 Q MN MN . E MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc14 E OD1 ASP 269 E ASP 269 1_555 P MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc15 F NE2 HIS 69 F HIS 69 1_555 T MN MN . F MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc16 F NE2 HIS 117 F HIS 117 1_555 T MN MN . F MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc17 F OD2 ASP 268 F ASP 268 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc18 F OD1 ASP 268 F ASP 268 1_555 T MN MN . F MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                T8T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-deoxyguanosine-5'-O-(1-thiotriphosphate)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 T8T doub 290 n n 
N1 C6 T8T sing 291 n n 
N2 C2 T8T sing 292 n n 
C2 N3 T8T sing 293 n n 
N2 HN2 T8T sing 294 n n 
N2 HN2A T8T sing 295 n n 
N3 C4 T8T sing 296 n n 
N3 HN3 T8T sing 297 n n 
C5 C4 T8T doub 298 n y 
C4 N9 T8T sing 299 n y 
C6 C5 T8T sing 300 n n 
C5 N7 T8T sing 301 n y 
O6 C6 T8T doub 302 n n 
N7 C8 T8T doub 303 n y 
N9 C8 T8T sing 304 n y 
C8 H8 T8T sing 305 n n 
N9 C1' T8T sing 306 n n 
S1A PA T8T sing 307 n n 
PA O5' T8T sing 308 n n 
PA O2A T8T doub 309 n n 
PA O3A T8T sing 310 n n 
O3B PB T8T sing 311 n n 
O3A PB T8T sing 312 n n 
PB O1B T8T doub 313 n n 
PB O2B T8T sing 314 n n 
O3G PG T8T doub 315 n n 
O3B PG T8T sing 316 n n 
PG O1G T8T sing 317 n n 
PG O2G T8T sing 318 n n 
O4' C1' T8T sing 319 n n 
C1' C2' T8T sing 320 n n 
C1' H1' T8T sing 321 n n 
S1A HS1A T8T sing 322 n n 
O1G HO1G T8T sing 323 n n 
C2' C3' T8T sing 324 n n 
C2' H2' T8T sing 325 n n 
C2' "H2'A" T8T sing 326 n n 
O2B HO2B T8T sing 327 n n 
O2G HO2G T8T sing 328 n n 
C4' C3' T8T sing 329 n n 
C3' O3' T8T sing 330 n n 
C3' H3' T8T sing 331 n n 
O3' HO3' T8T sing 332 n n 
O4' C4' T8T sing 333 n n 
C4' C5' T8T sing 334 n n 
C4' H4' T8T sing 335 n n 
C5' O5' T8T sing 336 n n 
C5' H5' T8T sing 337 n n 
C5' "H5'A" T8T sing 338 n n 
#
_atom_sites.entry_id                     6OIW 
_atom_sites.fract_transf_matrix[1][1]    0.005229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005229 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 MG A 1 601 601 MG MG . 
H 3 MN A 1 602 602 MN MN . 
I 4 T8T A 1 603 603 T8T T8T . 
J 3 MN B 1 601 601 MN MN . 
K 4 T8T B 1 602 602 T8T T8T . 
L 3 MN C 1 601 601 MN MN . 
M 4 T8T C 1 602 602 T8T T8T . 
N 3 MN D 1 601 601 MN MN . 
O 4 T8T D 1 602 602 T8T T8T . 
P 2 MG E 1 601 601 MG MG . 
Q 3 MN E 1 602 602 MN MN . 
R 4 T8T E 1 603 603 T8T T8T . 
S 2 MG F 1 601 601 MG MG . 
T 3 MN F 1 602 602 MN MN . 
U 4 T8T F 1 603 603 T8T T8T . 
V 5 HOH A 1 701 701 HOH HOH . 
V 5 HOH A 2 702 702 HOH HOH . 
V 5 HOH A 3 703 703 HOH HOH . 
V 5 HOH A 4 704 704 HOH HOH . 
V 5 HOH A 5 705 705 HOH HOH . 
W 5 HOH B 1 702 701 HOH HOH . 
W 5 HOH B 2 703 703 HOH HOH . 
W 5 HOH B 3 704 704 HOH HOH . 
W 5 HOH B 4 705 705 HOH HOH . 
X 5 HOH C 1 701 701 HOH HOH . 
X 5 HOH C 2 702 702 HOH HOH . 
Y 5 HOH D 1 701 701 HOH HOH . 
Y 5 HOH D 2 702 702 HOH HOH . 
Y 5 HOH D 3 703 703 HOH HOH . 
Y 5 HOH D 4 704 704 HOH HOH . 
Y 5 HOH D 5 705 705 HOH HOH . 
Z 5 HOH E 1 701 701 HOH HOH . 
Z 5 HOH E 2 702 702 HOH HOH . 
Z 5 HOH E 3 703 703 HOH HOH . 
Z 5 HOH E 4 704 704 HOH HOH . 
AA 5 HOH F 1 701 701 HOH HOH . 
AA 5 HOH F 2 702 702 HOH HOH . 
AA 5 HOH F 3 703 703 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 T8T . . . M 4 24.282 26.933 46.408 1 175.17 ? N1 T8T 602 C 1 
HETATM 2 C C2 T8T . . . M 4 24.099 27.526 47.578 1 173.49 ? C2 T8T 602 C 1 
HETATM 3 N N2 T8T . . . M 4 25.083 28.234 48.112 1 170.63 ? N2 T8T 602 C 1 
HETATM 4 N N3 T8T . . . M 4 22.938 27.432 48.289 1 174.32 ? N3 T8T 602 C 1 
HETATM 5 C C4 T8T . . . M 4 21.934 26.679 47.759 1 178.67 ? C4 T8T 602 C 1 
HETATM 6 C C5 T8T . . . M 4 22.095 26.052 46.547 1 181.02 ? C5 T8T 602 C 1 
HETATM 7 C C6 T8T . . . M 4 23.33 26.177 45.806 1 178.91 ? C6 T8T 602 C 1 
HETATM 8 O O6 T8T . . . M 4 23.531 25.668 44.703 1 180.32 ? O6 T8T 602 C 1 
HETATM 9 N N7 T8T . . . M 4 20.94 25.37 46.221 1 185.63 ? N7 T8T 602 C 1 
HETATM 10 C C8 T8T . . . M 4 20.135 25.605 47.199 1 185.87 ? C8 T8T 602 C 1 
HETATM 11 N N9 T8T . . . M 4 20.675 26.374 48.178 1 183 ? N9 T8T 602 C 1 
HETATM 12 P PA T8T . . . M 4 17.38 22.437 50.301 1 209.03 ? PA T8T 602 C 1 
HETATM 13 P PB T8T . . . M 4 14.705 21.739 50.739 1 222.89 ? PB T8T 602 C 1 
HETATM 14 P PG T8T . . . M 4 14.836 19 50.509 1 223.82 ? PG T8T 602 C 1 
HETATM 15 C C1' T8T . . . M 4 20.065 26.571 49.5 1 183.93 ? C1' T8T 602 C 1 
HETATM 16 S S1A T8T . . . M 4 17.925 21.114 51.703 1 207.63 ? S1A T8T 602 C 1 
HETATM 17 O O1B T8T . . . M 4 13.441 22.461 50.779 1 223.23 ? O1B T8T 602 C 1 
HETATM 18 O O1G T8T . . . M 4 16.011 18.538 49.737 1 223.17 ? O1G T8T 602 C 1 
HETATM 19 C C2' T8T . . . M 4 19.256 27.831 49.732 1 184.51 ? C2' T8T 602 C 1 
HETATM 20 O O2A T8T . . . M 4 17.923 22.402 48.978 1 208.45 ? O2A T8T 602 C 1 
HETATM 21 O O2B T8T . . . M 4 15.009 21.166 52.086 1 224.23 ? O2B T8T 602 C 1 
HETATM 22 O O2G T8T . . . M 4 15.109 19.329 51.866 1 223.41 ? O2G T8T 602 C 1 
HETATM 23 C C3' T8T . . . M 4 18.246 27.39 50.797 1 188.32 ? C3' T8T 602 C 1 
HETATM 24 O O3' T8T . . . M 4 18.54 27.9 52.093 1 186.23 ? O3' T8T 602 C 1 
HETATM 25 O O3A T8T . . . M 4 15.904 22.678 50.311 1 216.5 ? O3A T8T 602 C 1 
HETATM 26 O O3B T8T . . . M 4 14.599 20.424 49.861 1 224.36 ? O3B T8T 602 C 1 
HETATM 27 O O3G T8T . . . M 4 13.797 18.108 50.541 1 224.13 ? O3G T8T 602 C 1 
HETATM 28 C C4' T8T . . . M 4 18.46 25.883 50.893 1 190.4 ? C4' T8T 602 C 1 
HETATM 29 O O4' T8T . . . M 4 19.148 25.543 49.695 1 187.96 ? O4' T8T 602 C 1 
HETATM 30 C C5' T8T . . . M 4 17.279 24.968 51.053 1 199.32 ? C5' T8T 602 C 1 
HETATM 31 O O5' T8T . . . M 4 17.813 23.646 51.055 1 203.77 ? O5' T8T 602 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    95 
_model_server_stats.query_time_ms           468 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           31 
#