data_6OJH # _model_server_result.job_id Nao_jSNUQKGPEnbm5bmrWQ _model_server_result.datetime_utc '2025-03-06 09:34:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ojh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6OJH # _exptl.entry_id 6OJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[(3R)-3-aminopyrrolidin-1-yl]-6-(naphthalen-1-yl)pyrido[2,3-d]pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OJH _cell.length_a 85.688 _cell.length_b 85.688 _cell.length_c 104.83 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 85.688 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 296 A GLU 276 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A OE1 GLU 308 A GLU 288 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 A OD1 ASN 310 A ASN 290 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc4 C CA CA . A CA 502 1_555 D OXT ACT . A ACT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc5 C CA CA . A CA 502 1_555 D O ACT . A ACT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc6 C CA CA . A CA 502 1_555 E O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? # _chem_comp.formula 'C21 H20 N6' _chem_comp.formula_weight 356.424 _chem_comp.id MV4 _chem_comp.mon_nstd_flag . _chem_comp.name 7-[(3R)-3-aminopyrrolidin-1-yl]-6-(naphthalen-1-yl)pyrido[2,3-d]pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAP CAO MV4 doub 243 n y CAP CAQ MV4 sing 244 n y CAO CAN MV4 sing 245 n y CAY CAZ MV4 sing 246 n n CAY CAX MV4 sing 247 n n CAQ CAL MV4 doub 248 n y CAN CAU MV4 doub 249 n y CAN CAM MV4 sing 250 n y CAU CAT MV4 sing 251 n y CAZ NAV MV4 sing 252 n n CAX NBA MV4 sing 253 n n CAX CAW MV4 sing 254 n n CAT CAS MV4 doub 255 n y CAL CAM MV4 sing 256 n y CAL CAB MV4 sing 257 n n CAM CAR MV4 doub 258 n y NAV CAW MV4 sing 259 n n NAV CAC MV4 sing 260 n n CAS CAR MV4 sing 261 n y CAB CAC MV4 doub 262 n y CAB CAA MV4 sing 263 n y CAC NAD MV4 sing 264 n y CAA C5 MV4 doub 265 n y NAD C4 MV4 doub 266 n y C5 C4 MV4 sing 267 n y C5 C6 MV4 sing 268 n y C4 N3 MV4 sing 269 n y C6 N1 MV4 doub 270 n y N3 C2 MV4 doub 271 n y N1 C2 MV4 sing 272 n y C2 NAK MV4 sing 273 n n C6 H1 MV4 sing 274 n n CAZ H2 MV4 sing 275 n n CAZ H3 MV4 sing 276 n n CAY H4 MV4 sing 277 n n CAY H5 MV4 sing 278 n n CAX H6 MV4 sing 279 n n NBA H7 MV4 sing 280 n n NBA H8 MV4 sing 281 n n CAW H10 MV4 sing 282 n n CAW H11 MV4 sing 283 n n NAK H12 MV4 sing 284 n n NAK H13 MV4 sing 285 n n CAA H14 MV4 sing 286 n n CAR H15 MV4 sing 287 n n CAS H16 MV4 sing 288 n n CAT H17 MV4 sing 289 n n CAU H18 MV4 sing 290 n n CAO H19 MV4 sing 291 n n CAP H20 MV4 sing 292 n n CAQ H21 MV4 sing 293 n n # _atom_sites.entry_id 6OJH _atom_sites.fract_transf_matrix[1][1] 0.01167 _atom_sites.fract_transf_matrix[1][2] 0.006738 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MV4 A 1 501 1 MV4 DRG . C 3 CA A 1 502 1 CA CA . D 4 ACT A 1 503 2 ACT ACT . E 5 HOH A 1 601 67 HOH HOH . E 5 HOH A 2 602 37 HOH HOH . E 5 HOH A 3 603 122 HOH HOH . E 5 HOH A 4 604 121 HOH HOH . E 5 HOH A 5 605 28 HOH HOH . E 5 HOH A 6 606 32 HOH HOH . E 5 HOH A 7 607 164 HOH HOH . E 5 HOH A 8 608 143 HOH HOH . E 5 HOH A 9 609 83 HOH HOH . E 5 HOH A 10 610 155 HOH HOH . E 5 HOH A 11 611 117 HOH HOH . E 5 HOH A 12 612 87 HOH HOH . E 5 HOH A 13 613 77 HOH HOH . E 5 HOH A 14 614 27 HOH HOH . E 5 HOH A 15 615 40 HOH HOH . E 5 HOH A 16 616 96 HOH HOH . E 5 HOH A 17 617 76 HOH HOH . E 5 HOH A 18 618 1 HOH HOH . E 5 HOH A 19 619 45 HOH HOH . E 5 HOH A 20 620 71 HOH HOH . E 5 HOH A 21 621 21 HOH HOH . E 5 HOH A 22 622 154 HOH HOH . E 5 HOH A 23 623 13 HOH HOH . E 5 HOH A 24 624 4 HOH HOH . E 5 HOH A 25 625 108 HOH HOH . E 5 HOH A 26 626 47 HOH HOH . E 5 HOH A 27 627 6 HOH HOH . E 5 HOH A 28 628 72 HOH HOH . E 5 HOH A 29 629 26 HOH HOH . E 5 HOH A 30 630 38 HOH HOH . E 5 HOH A 31 631 159 HOH HOH . E 5 HOH A 32 632 113 HOH HOH . E 5 HOH A 33 633 75 HOH HOH . E 5 HOH A 34 634 17 HOH HOH . E 5 HOH A 35 635 30 HOH HOH . E 5 HOH A 36 636 94 HOH HOH . E 5 HOH A 37 637 15 HOH HOH . E 5 HOH A 38 638 84 HOH HOH . E 5 HOH A 39 639 29 HOH HOH . E 5 HOH A 40 640 51 HOH HOH . E 5 HOH A 41 641 147 HOH HOH . E 5 HOH A 42 642 119 HOH HOH . E 5 HOH A 43 643 65 HOH HOH . E 5 HOH A 44 644 73 HOH HOH . E 5 HOH A 45 645 56 HOH HOH . E 5 HOH A 46 646 41 HOH HOH . E 5 HOH A 47 647 169 HOH HOH . E 5 HOH A 48 648 52 HOH HOH . E 5 HOH A 49 649 31 HOH HOH . E 5 HOH A 50 650 151 HOH HOH . E 5 HOH A 51 651 116 HOH HOH . E 5 HOH A 52 652 149 HOH HOH . E 5 HOH A 53 653 79 HOH HOH . E 5 HOH A 54 654 125 HOH HOH . E 5 HOH A 55 655 44 HOH HOH . E 5 HOH A 56 656 160 HOH HOH . E 5 HOH A 57 657 145 HOH HOH . E 5 HOH A 58 658 46 HOH HOH . E 5 HOH A 59 659 100 HOH HOH . E 5 HOH A 60 660 81 HOH HOH . E 5 HOH A 61 661 43 HOH HOH . E 5 HOH A 62 662 50 HOH HOH . E 5 HOH A 63 663 85 HOH HOH . E 5 HOH A 64 664 42 HOH HOH . E 5 HOH A 65 665 114 HOH HOH . E 5 HOH A 66 666 7 HOH HOH . E 5 HOH A 67 667 101 HOH HOH . E 5 HOH A 68 668 62 HOH HOH . E 5 HOH A 69 669 23 HOH HOH . E 5 HOH A 70 670 2 HOH HOH . E 5 HOH A 71 671 99 HOH HOH . E 5 HOH A 72 672 171 HOH HOH . E 5 HOH A 73 673 39 HOH HOH . E 5 HOH A 74 674 90 HOH HOH . E 5 HOH A 75 675 49 HOH HOH . E 5 HOH A 76 676 59 HOH HOH . E 5 HOH A 77 677 118 HOH HOH . E 5 HOH A 78 678 16 HOH HOH . E 5 HOH A 79 679 92 HOH HOH . E 5 HOH A 80 680 140 HOH HOH . E 5 HOH A 81 681 48 HOH HOH . E 5 HOH A 82 682 137 HOH HOH . E 5 HOH A 83 683 70 HOH HOH . E 5 HOH A 84 684 148 HOH HOH . E 5 HOH A 85 685 161 HOH HOH . E 5 HOH A 86 686 3 HOH HOH . E 5 HOH A 87 687 152 HOH HOH . E 5 HOH A 88 688 127 HOH HOH . E 5 HOH A 89 689 110 HOH HOH . E 5 HOH A 90 690 12 HOH HOH . E 5 HOH A 91 691 8 HOH HOH . E 5 HOH A 92 692 129 HOH HOH . E 5 HOH A 93 693 131 HOH HOH . E 5 HOH A 94 694 133 HOH HOH . E 5 HOH A 95 695 60 HOH HOH . E 5 HOH A 96 696 36 HOH HOH . E 5 HOH A 97 697 165 HOH HOH . E 5 HOH A 98 698 22 HOH HOH . E 5 HOH A 99 699 19 HOH HOH . E 5 HOH A 100 700 20 HOH HOH . E 5 HOH A 101 701 78 HOH HOH . E 5 HOH A 102 702 123 HOH HOH . E 5 HOH A 103 703 88 HOH HOH . E 5 HOH A 104 704 168 HOH HOH . E 5 HOH A 105 705 135 HOH HOH . E 5 HOH A 106 706 33 HOH HOH . E 5 HOH A 107 707 9 HOH HOH . E 5 HOH A 108 708 134 HOH HOH . E 5 HOH A 109 709 156 HOH HOH . E 5 HOH A 110 710 55 HOH HOH . E 5 HOH A 111 711 69 HOH HOH . E 5 HOH A 112 712 53 HOH HOH . E 5 HOH A 113 713 68 HOH HOH . E 5 HOH A 114 714 153 HOH HOH . E 5 HOH A 115 715 25 HOH HOH . E 5 HOH A 116 716 138 HOH HOH . E 5 HOH A 117 717 18 HOH HOH . E 5 HOH A 118 718 130 HOH HOH . E 5 HOH A 119 719 91 HOH HOH . E 5 HOH A 120 720 115 HOH HOH . E 5 HOH A 121 721 14 HOH HOH . E 5 HOH A 122 722 24 HOH HOH . E 5 HOH A 123 723 5 HOH HOH . E 5 HOH A 124 724 107 HOH HOH . E 5 HOH A 125 725 66 HOH HOH . E 5 HOH A 126 726 35 HOH HOH . E 5 HOH A 127 727 105 HOH HOH . E 5 HOH A 128 728 80 HOH HOH . E 5 HOH A 129 729 146 HOH HOH . E 5 HOH A 130 730 89 HOH HOH . E 5 HOH A 131 731 98 HOH HOH . E 5 HOH A 132 732 102 HOH HOH . E 5 HOH A 133 733 58 HOH HOH . E 5 HOH A 134 734 10 HOH HOH . E 5 HOH A 135 735 11 HOH HOH . E 5 HOH A 136 736 166 HOH HOH . E 5 HOH A 137 737 109 HOH HOH . E 5 HOH A 138 738 97 HOH HOH . E 5 HOH A 139 739 95 HOH HOH . E 5 HOH A 140 740 57 HOH HOH . E 5 HOH A 141 741 86 HOH HOH . E 5 HOH A 142 742 141 HOH HOH . E 5 HOH A 143 743 163 HOH HOH . E 5 HOH A 144 744 162 HOH HOH . E 5 HOH A 145 745 157 HOH HOH . E 5 HOH A 146 746 132 HOH HOH . E 5 HOH A 147 747 54 HOH HOH . E 5 HOH A 148 748 34 HOH HOH . E 5 HOH A 149 749 106 HOH HOH . E 5 HOH A 150 750 120 HOH HOH . E 5 HOH A 151 751 111 HOH HOH . E 5 HOH A 152 752 63 HOH HOH . E 5 HOH A 153 753 167 HOH HOH . E 5 HOH A 154 754 64 HOH HOH . E 5 HOH A 155 755 144 HOH HOH . E 5 HOH A 156 756 126 HOH HOH . E 5 HOH A 157 757 139 HOH HOH . E 5 HOH A 158 758 103 HOH HOH . E 5 HOH A 159 759 136 HOH HOH . E 5 HOH A 160 760 93 HOH HOH . E 5 HOH A 161 761 61 HOH HOH . E 5 HOH A 162 762 82 HOH HOH . E 5 HOH A 163 763 170 HOH HOH . E 5 HOH A 164 764 104 HOH HOH . E 5 HOH A 165 765 74 HOH HOH . E 5 HOH A 166 766 112 HOH HOH . E 5 HOH A 167 767 142 HOH HOH . E 5 HOH A 168 768 128 HOH HOH . E 5 HOH A 169 769 150 HOH HOH . E 5 HOH A 170 770 158 HOH HOH . E 5 HOH A 171 771 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 MV4 . . . B 2 18.361 24.475 3.804 1 43.5 ? C4 MV4 501 A 1 HETATM 2 C C5 MV4 . . . B 2 19.426 25.361 3.61 1 41.58 ? C5 MV4 501 A 1 HETATM 3 C C6 MV4 . . . B 2 19.648 26.347 4.563 1 40.09 ? C6 MV4 501 A 1 HETATM 4 N N1 MV4 . . . B 2 18.792 26.431 5.681 1 39.49 ? N1 MV4 501 A 1 HETATM 5 N N3 MV4 . . . B 2 17.577 24.576 4.896 1 41.74 ? N3 MV4 501 A 1 HETATM 6 C CAZ MV4 . . . B 2 18.929 21.91 -0.422 1 47.62 ? CAZ MV4 501 A 1 HETATM 7 C CAY MV4 . . . B 2 17.835 21.025 -0.902 1 49.57 ? CAY MV4 501 A 1 HETATM 8 C CAX MV4 . . . B 2 17.119 20.545 0.355 1 49.6 ? CAX MV4 501 A 1 HETATM 9 N NBA MV4 . . . B 2 17.461 19.153 0.695 1 49.01 ? NBA MV4 501 A 1 HETATM 10 C CAW MV4 . . . B 2 17.479 21.47 1.355 1 48.02 ? CAW MV4 501 A 1 HETATM 11 N NAV MV4 . . . B 2 18.485 22.295 0.973 1 44.89 ? NAV MV4 501 A 1 HETATM 12 C CAC MV4 . . . B 2 18.88 23.321 1.784 1 43.6 ? CAC MV4 501 A 1 HETATM 13 N NAD MV4 . . . B 2 18.126 23.512 2.9 1 43.97 ? NAD MV4 501 A 1 HETATM 14 C C2 MV4 . . . B 2 17.777 25.541 5.827 1 43.23 ? C2 MV4 501 A 1 HETATM 15 N NAK MV4 . . . B 2 16.97 25.595 6.894 1 40.75 ? NAK MV4 501 A 1 HETATM 16 C CAA MV4 . . . B 2 20.24 25.221 2.48 1 40.55 ? CAA MV4 501 A 1 HETATM 17 C CAB MV4 . . . B 2 19.973 24.213 1.549 1 41.9 ? CAB MV4 501 A 1 HETATM 18 C CAL MV4 . . . B 2 20.829 24.089 0.438 1 42.64 ? CAL MV4 501 A 1 HETATM 19 C CAM MV4 . . . B 2 21.77 23.04 0.444 1 41.97 ? CAM MV4 501 A 1 HETATM 20 C CAR MV4 . . . B 2 21.85 22.153 1.529 1 39.34 ? CAR MV4 501 A 1 HETATM 21 C CAS MV4 . . . B 2 22.779 21.114 1.523 1 43.3 ? CAS MV4 501 A 1 HETATM 22 C CAT MV4 . . . B 2 23.632 20.943 0.434 1 41.25 ? CAT MV4 501 A 1 HETATM 23 C CAU MV4 . . . B 2 23.557 21.817 -0.656 1 41.72 ? CAU MV4 501 A 1 HETATM 24 C CAN MV4 . . . B 2 22.624 22.859 -0.658 1 40.89 ? CAN MV4 501 A 1 HETATM 25 C CAO MV4 . . . B 2 22.564 23.738 -1.744 1 42.98 ? CAO MV4 501 A 1 HETATM 26 C CAP MV4 . . . B 2 21.637 24.784 -1.748 1 41.81 ? CAP MV4 501 A 1 HETATM 27 C CAQ MV4 . . . B 2 20.777 24.955 -0.659 1 40.77 ? CAQ MV4 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #