data_6OJP
#
_model_server_result.job_id            ykI22VG1wzTVyQhrt1gZpQ 
_model_server_result.datetime_utc      '2024-10-12 06:17:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ojp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":103}' 
#
_entry.id    6OJP 
#
_exptl.entry_id    6OJP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OJP 
_cell.length_a            41.891 
_cell.length_b            105.666 
_cell.length_c            106.672 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OJP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 I N N 
? 8 K N N 
? 8 L N N 
? 8 M N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
5 ? 3 6 1 FUC NAG C1 O1 . O6 HO6 . sing 
6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
7 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
8 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
9 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG A 310 NAG 
3 n C NAG 2 C 2 NAG A 311 NAG 
3 n C BMA 3 C 3 BMA A 312 BMA 
3 n C MAN 4 C 4 MAN A 313 MAN 
3 n C MAN 5 C 5 MAN A 314 MAN 
3 n C FUC 6 C 6 FUC A 315 FUC 
4 n D NAG 1 D 1 NAG A 320 NAG 
4 n D NAG 2 D 2 NAG A 321 NAG 
4 n D BMA 3 D 3 BMA A 322 BMA 
4 n D MAN 4 D 4 MAN A 323 MAN 
4 n D MAN 5 D 5 MAN A 324 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
covale ? covale1 A ND2 ASN 7 A ASN 7 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 20 A ASN 20 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 A ND2 ASN 42 A ASN 42 1_555 F C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale8 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale9 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale12 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale13 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 281 n n 
C1 C2 GOL sing 282 n n 
C1 H11 GOL sing 283 n n 
C1 H12 GOL sing 284 n n 
O1 HO1 GOL sing 285 n n 
C2 O2 GOL sing 286 n n 
C2 C3 GOL sing 287 n n 
C2 H2 GOL sing 288 n n 
O2 HO2 GOL sing 289 n n 
C3 O3 GOL sing 290 n n 
C3 H31 GOL sing 291 n n 
C3 H32 GOL sing 292 n n 
O3 HO3 GOL sing 293 n n 
#
_atom_sites.entry_id                     6OJP 
_atom_sites.fract_transf_matrix[1][1]    0.023871 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009464 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009375 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG A 1 301 300 NAG NAG . 
F 5 NAG A 1 302 301 NAG NAG . 
G 6 7LP A 1 309 501 7LP 168 . 
H 7 PLM A 1 310 502 PLM PLM . 
I 8 GOL A 1 311 601 GOL GOL . 
J 9 SO4 A 1 317 1 SO4 SO4 . 
K 8 GOL B 1 101 602 GOL GOL . 
L 8 GOL B 1 102 603 GOL GOL . 
M 8 GOL B 1 103 604 GOL GOL . 
N 10 HOH A 1 401 37 HOH HOH . 
N 10 HOH A 2 402 90 HOH HOH . 
N 10 HOH A 3 403 41 HOH HOH . 
N 10 HOH A 4 404 58 HOH HOH . 
N 10 HOH A 5 405 33 HOH HOH . 
N 10 HOH A 6 406 112 HOH HOH . 
N 10 HOH A 7 407 59 HOH HOH . 
N 10 HOH A 8 408 81 HOH HOH . 
N 10 HOH A 9 409 56 HOH HOH . 
N 10 HOH A 10 410 115 HOH HOH . 
N 10 HOH A 11 411 8 HOH HOH . 
N 10 HOH A 12 412 22 HOH HOH . 
N 10 HOH A 13 413 60 HOH HOH . 
N 10 HOH A 14 414 1 HOH HOH . 
N 10 HOH A 15 415 6 HOH HOH . 
N 10 HOH A 16 416 118 HOH HOH . 
N 10 HOH A 17 417 77 HOH HOH . 
N 10 HOH A 18 418 62 HOH HOH . 
N 10 HOH A 19 419 61 HOH HOH . 
N 10 HOH A 20 420 21 HOH HOH . 
N 10 HOH A 21 421 91 HOH HOH . 
N 10 HOH A 22 422 44 HOH HOH . 
N 10 HOH A 23 423 67 HOH HOH . 
N 10 HOH A 24 424 11 HOH HOH . 
N 10 HOH A 25 425 68 HOH HOH . 
N 10 HOH A 26 426 103 HOH HOH . 
N 10 HOH A 27 427 63 HOH HOH . 
N 10 HOH A 28 428 3 HOH HOH . 
N 10 HOH A 29 429 45 HOH HOH . 
N 10 HOH A 30 430 70 HOH HOH . 
N 10 HOH A 31 431 87 HOH HOH . 
N 10 HOH A 32 432 25 HOH HOH . 
N 10 HOH A 33 433 108 HOH HOH . 
N 10 HOH A 34 434 27 HOH HOH . 
N 10 HOH A 35 435 50 HOH HOH . 
N 10 HOH A 36 436 10 HOH HOH . 
N 10 HOH A 37 437 75 HOH HOH . 
N 10 HOH A 38 438 7 HOH HOH . 
N 10 HOH A 39 439 76 HOH HOH . 
N 10 HOH A 40 440 17 HOH HOH . 
N 10 HOH A 41 441 32 HOH HOH . 
N 10 HOH A 42 442 69 HOH HOH . 
N 10 HOH A 43 443 114 HOH HOH . 
N 10 HOH A 44 444 31 HOH HOH . 
N 10 HOH A 45 445 93 HOH HOH . 
N 10 HOH A 46 446 23 HOH HOH . 
N 10 HOH A 47 447 16 HOH HOH . 
N 10 HOH A 48 448 26 HOH HOH . 
N 10 HOH A 49 449 106 HOH HOH . 
N 10 HOH A 50 450 80 HOH HOH . 
N 10 HOH A 51 451 40 HOH HOH . 
N 10 HOH A 52 452 97 HOH HOH . 
N 10 HOH A 53 453 116 HOH HOH . 
O 10 HOH B 1 201 49 HOH HOH . 
O 10 HOH B 2 202 13 HOH HOH . 
O 10 HOH B 3 203 104 HOH HOH . 
O 10 HOH B 4 204 34 HOH HOH . 
O 10 HOH B 5 205 5 HOH HOH . 
O 10 HOH B 6 206 47 HOH HOH . 
O 10 HOH B 7 207 12 HOH HOH . 
O 10 HOH B 8 208 95 HOH HOH . 
O 10 HOH B 9 209 43 HOH HOH . 
O 10 HOH B 10 210 35 HOH HOH . 
O 10 HOH B 11 211 83 HOH HOH . 
O 10 HOH B 12 212 15 HOH HOH . 
O 10 HOH B 13 213 101 HOH HOH . 
O 10 HOH B 14 214 64 HOH HOH . 
O 10 HOH B 15 215 52 HOH HOH . 
O 10 HOH B 16 216 48 HOH HOH . 
O 10 HOH B 17 217 18 HOH HOH . 
O 10 HOH B 18 218 111 HOH HOH . 
O 10 HOH B 19 219 72 HOH HOH . 
O 10 HOH B 20 220 96 HOH HOH . 
O 10 HOH B 21 221 9 HOH HOH . 
O 10 HOH B 22 222 105 HOH HOH . 
O 10 HOH B 23 223 99 HOH HOH . 
O 10 HOH B 24 224 14 HOH HOH . 
O 10 HOH B 25 225 71 HOH HOH . 
O 10 HOH B 26 226 42 HOH HOH . 
O 10 HOH B 27 227 46 HOH HOH . 
O 10 HOH B 28 228 24 HOH HOH . 
O 10 HOH B 29 229 92 HOH HOH . 
O 10 HOH B 30 230 119 HOH HOH . 
O 10 HOH B 31 231 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 8 -26.236 4.886 12.158 1 51.48 ? C1 GOL 103 B 1 
HETATM 2 O O1 GOL . . . M 8 -25.163 4.001 11.846 1 51 ? O1 GOL 103 B 1 
HETATM 3 C C2 GOL . . . M 8 -26.201 5.313 13.612 1 52.75 ? C2 GOL 103 B 1 
HETATM 4 O O2 GOL . . . M 8 -27.337 6.125 13.909 1 52.33 ? O2 GOL 103 B 1 
HETATM 5 C C3 GOL . . . M 8 -24.933 6.055 13.99 1 52.3 ? C3 GOL 103 B 1 
HETATM 6 O O3 GOL . . . M 8 -24.863 7.341 13.379 1 51.55 ? O3 GOL 103 B 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#