data_6OJP # _model_server_result.job_id 1Mumq-5qhSh75JLvNnWclA _model_server_result.datetime_utc '2024-10-12 06:17:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ojp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6OJP # _exptl.entry_id 6OJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OJP _cell.length_a 41.891 _cell.length_b 105.666 _cell.length_c 106.672 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 6 1 FUC NAG C1 O1 . O6 HO6 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 8 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 9 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 310 NAG 3 n C NAG 2 C 2 NAG A 311 NAG 3 n C BMA 3 C 3 BMA A 312 BMA 3 n C MAN 4 C 4 MAN A 313 MAN 3 n C MAN 5 C 5 MAN A 314 MAN 3 n C FUC 6 C 6 FUC A 315 FUC 4 n D NAG 1 D 1 NAG A 320 NAG 4 n D NAG 2 D 2 NAG A 321 NAG 4 n D BMA 3 D 3 BMA A 322 BMA 4 n D MAN 4 D 4 MAN A 323 MAN 4 n D MAN 5 D 5 MAN A 324 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale1 A ND2 ASN 7 A ASN 7 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 20 A ASN 20 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 42 A ASN 42 1_555 F C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 426 n n C1 O1 NAG sing 427 n n C1 O5 NAG sing 428 n n C1 H1 NAG sing 429 n n C2 C3 NAG sing 430 n n C2 N2 NAG sing 431 n n C2 H2 NAG sing 432 n n C3 C4 NAG sing 433 n n C3 O3 NAG sing 434 n n C3 H3 NAG sing 435 n n C4 C5 NAG sing 436 n n C4 O4 NAG sing 437 n n C4 H4 NAG sing 438 n n C5 C6 NAG sing 439 n n C5 O5 NAG sing 440 n n C5 H5 NAG sing 441 n n C6 O6 NAG sing 442 n n C6 H61 NAG sing 443 n n C6 H62 NAG sing 444 n n C7 C8 NAG sing 445 n n C7 N2 NAG sing 446 n n C7 O7 NAG doub 447 n n C8 H81 NAG sing 448 n n C8 H82 NAG sing 449 n n C8 H83 NAG sing 450 n n N2 HN2 NAG sing 451 n n O1 HO1 NAG sing 452 n n O3 HO3 NAG sing 453 n n O4 HO4 NAG sing 454 n n O6 HO6 NAG sing 455 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6OJP _atom_sites.fract_transf_matrix[1][1] 0.023871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 301 300 NAG NAG . F 5 NAG A 1 302 301 NAG NAG . G 6 7LP A 1 309 501 7LP 168 . H 7 PLM A 1 310 502 PLM PLM . I 8 GOL A 1 311 601 GOL GOL . J 9 SO4 A 1 317 1 SO4 SO4 . K 8 GOL B 1 101 602 GOL GOL . L 8 GOL B 1 102 603 GOL GOL . M 8 GOL B 1 103 604 GOL GOL . N 10 HOH A 1 401 37 HOH HOH . N 10 HOH A 2 402 90 HOH HOH . N 10 HOH A 3 403 41 HOH HOH . N 10 HOH A 4 404 58 HOH HOH . N 10 HOH A 5 405 33 HOH HOH . N 10 HOH A 6 406 112 HOH HOH . N 10 HOH A 7 407 59 HOH HOH . N 10 HOH A 8 408 81 HOH HOH . N 10 HOH A 9 409 56 HOH HOH . N 10 HOH A 10 410 115 HOH HOH . N 10 HOH A 11 411 8 HOH HOH . N 10 HOH A 12 412 22 HOH HOH . N 10 HOH A 13 413 60 HOH HOH . N 10 HOH A 14 414 1 HOH HOH . N 10 HOH A 15 415 6 HOH HOH . N 10 HOH A 16 416 118 HOH HOH . N 10 HOH A 17 417 77 HOH HOH . N 10 HOH A 18 418 62 HOH HOH . N 10 HOH A 19 419 61 HOH HOH . N 10 HOH A 20 420 21 HOH HOH . N 10 HOH A 21 421 91 HOH HOH . N 10 HOH A 22 422 44 HOH HOH . N 10 HOH A 23 423 67 HOH HOH . N 10 HOH A 24 424 11 HOH HOH . N 10 HOH A 25 425 68 HOH HOH . N 10 HOH A 26 426 103 HOH HOH . N 10 HOH A 27 427 63 HOH HOH . N 10 HOH A 28 428 3 HOH HOH . N 10 HOH A 29 429 45 HOH HOH . N 10 HOH A 30 430 70 HOH HOH . N 10 HOH A 31 431 87 HOH HOH . N 10 HOH A 32 432 25 HOH HOH . N 10 HOH A 33 433 108 HOH HOH . N 10 HOH A 34 434 27 HOH HOH . N 10 HOH A 35 435 50 HOH HOH . N 10 HOH A 36 436 10 HOH HOH . N 10 HOH A 37 437 75 HOH HOH . N 10 HOH A 38 438 7 HOH HOH . N 10 HOH A 39 439 76 HOH HOH . N 10 HOH A 40 440 17 HOH HOH . N 10 HOH A 41 441 32 HOH HOH . N 10 HOH A 42 442 69 HOH HOH . N 10 HOH A 43 443 114 HOH HOH . N 10 HOH A 44 444 31 HOH HOH . N 10 HOH A 45 445 93 HOH HOH . N 10 HOH A 46 446 23 HOH HOH . N 10 HOH A 47 447 16 HOH HOH . N 10 HOH A 48 448 26 HOH HOH . N 10 HOH A 49 449 106 HOH HOH . N 10 HOH A 50 450 80 HOH HOH . N 10 HOH A 51 451 40 HOH HOH . N 10 HOH A 52 452 97 HOH HOH . N 10 HOH A 53 453 116 HOH HOH . O 10 HOH B 1 201 49 HOH HOH . O 10 HOH B 2 202 13 HOH HOH . O 10 HOH B 3 203 104 HOH HOH . O 10 HOH B 4 204 34 HOH HOH . O 10 HOH B 5 205 5 HOH HOH . O 10 HOH B 6 206 47 HOH HOH . O 10 HOH B 7 207 12 HOH HOH . O 10 HOH B 8 208 95 HOH HOH . O 10 HOH B 9 209 43 HOH HOH . O 10 HOH B 10 210 35 HOH HOH . O 10 HOH B 11 211 83 HOH HOH . O 10 HOH B 12 212 15 HOH HOH . O 10 HOH B 13 213 101 HOH HOH . O 10 HOH B 14 214 64 HOH HOH . O 10 HOH B 15 215 52 HOH HOH . O 10 HOH B 16 216 48 HOH HOH . O 10 HOH B 17 217 18 HOH HOH . O 10 HOH B 18 218 111 HOH HOH . O 10 HOH B 19 219 72 HOH HOH . O 10 HOH B 20 220 96 HOH HOH . O 10 HOH B 21 221 9 HOH HOH . O 10 HOH B 22 222 105 HOH HOH . O 10 HOH B 23 223 99 HOH HOH . O 10 HOH B 24 224 14 HOH HOH . O 10 HOH B 25 225 71 HOH HOH . O 10 HOH B 26 226 42 HOH HOH . O 10 HOH B 27 227 46 HOH HOH . O 10 HOH B 28 228 24 HOH HOH . O 10 HOH B 29 229 92 HOH HOH . O 10 HOH B 30 230 119 HOH HOH . O 10 HOH B 31 231 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 -2.989 -22.036 -4.852 1 69.23 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . E 5 -3.153 -23.176 -3.837 1 71.97 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . E 5 -4.585 -23.303 -3.298 1 72.96 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . E 5 -5.2 -21.952 -2.953 1 72.06 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . E 5 -5.045 -21.027 -4.153 1 70.69 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . E 5 -5.737 -19.681 -3.949 1 70.46 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . E 5 -1.504 -24.886 -4.503 1 74.72 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . E 5 -1.315 -26.184 -5.235 1 74.78 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . E 5 -2.761 -24.433 -4.464 1 73.67 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . E 5 -4.599 -24.125 -2.125 1 74.57 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . E 5 -6.582 -22.115 -2.595 1 70.86 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . E 5 -3.644 -20.849 -4.387 1 69.31 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . E 5 -5.311 -19.074 -2.724 1 69.91 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . E 5 -0.562 -24.3 -3.994 1 75.63 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #