data_6OJP # _model_server_result.job_id 9bZLOhAs6LfO5LRRDjDRnA _model_server_result.datetime_utc '2024-11-23 11:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ojp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":317}' # _entry.id 6OJP # _exptl.entry_id 6OJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OJP _cell.length_a 41.891 _cell.length_b 105.666 _cell.length_c 106.672 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 6 1 FUC NAG C1 O1 . O6 HO6 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 8 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 9 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 310 NAG 3 n C NAG 2 C 2 NAG A 311 NAG 3 n C BMA 3 C 3 BMA A 312 BMA 3 n C MAN 4 C 4 MAN A 313 MAN 3 n C MAN 5 C 5 MAN A 314 MAN 3 n C FUC 6 C 6 FUC A 315 FUC 4 n D NAG 1 D 1 NAG A 320 NAG 4 n D NAG 2 D 2 NAG A 321 NAG 4 n D BMA 3 D 3 BMA A 322 BMA 4 n D MAN 4 D 4 MAN A 323 MAN 4 n D MAN 5 D 5 MAN A 324 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? covale ? covale1 A ND2 ASN 7 A ASN 7 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 20 A ASN 20 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 42 A ASN 42 1_555 F C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 558 n n S O2 SO4 doub 559 n n S O3 SO4 sing 560 n n S O4 SO4 sing 561 n n # _atom_sites.entry_id 6OJP _atom_sites.fract_transf_matrix[1][1] 0.023871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 301 300 NAG NAG . F 5 NAG A 1 302 301 NAG NAG . G 6 7LP A 1 309 501 7LP 168 . H 7 PLM A 1 310 502 PLM PLM . I 8 GOL A 1 311 601 GOL GOL . J 9 SO4 A 1 317 1 SO4 SO4 . K 8 GOL B 1 101 602 GOL GOL . L 8 GOL B 1 102 603 GOL GOL . M 8 GOL B 1 103 604 GOL GOL . N 10 HOH A 1 401 37 HOH HOH . N 10 HOH A 2 402 90 HOH HOH . N 10 HOH A 3 403 41 HOH HOH . N 10 HOH A 4 404 58 HOH HOH . N 10 HOH A 5 405 33 HOH HOH . N 10 HOH A 6 406 112 HOH HOH . N 10 HOH A 7 407 59 HOH HOH . N 10 HOH A 8 408 81 HOH HOH . N 10 HOH A 9 409 56 HOH HOH . N 10 HOH A 10 410 115 HOH HOH . N 10 HOH A 11 411 8 HOH HOH . N 10 HOH A 12 412 22 HOH HOH . N 10 HOH A 13 413 60 HOH HOH . N 10 HOH A 14 414 1 HOH HOH . N 10 HOH A 15 415 6 HOH HOH . N 10 HOH A 16 416 118 HOH HOH . N 10 HOH A 17 417 77 HOH HOH . N 10 HOH A 18 418 62 HOH HOH . N 10 HOH A 19 419 61 HOH HOH . N 10 HOH A 20 420 21 HOH HOH . N 10 HOH A 21 421 91 HOH HOH . N 10 HOH A 22 422 44 HOH HOH . N 10 HOH A 23 423 67 HOH HOH . N 10 HOH A 24 424 11 HOH HOH . N 10 HOH A 25 425 68 HOH HOH . N 10 HOH A 26 426 103 HOH HOH . N 10 HOH A 27 427 63 HOH HOH . N 10 HOH A 28 428 3 HOH HOH . N 10 HOH A 29 429 45 HOH HOH . N 10 HOH A 30 430 70 HOH HOH . N 10 HOH A 31 431 87 HOH HOH . N 10 HOH A 32 432 25 HOH HOH . N 10 HOH A 33 433 108 HOH HOH . N 10 HOH A 34 434 27 HOH HOH . N 10 HOH A 35 435 50 HOH HOH . N 10 HOH A 36 436 10 HOH HOH . N 10 HOH A 37 437 75 HOH HOH . N 10 HOH A 38 438 7 HOH HOH . N 10 HOH A 39 439 76 HOH HOH . N 10 HOH A 40 440 17 HOH HOH . N 10 HOH A 41 441 32 HOH HOH . N 10 HOH A 42 442 69 HOH HOH . N 10 HOH A 43 443 114 HOH HOH . N 10 HOH A 44 444 31 HOH HOH . N 10 HOH A 45 445 93 HOH HOH . N 10 HOH A 46 446 23 HOH HOH . N 10 HOH A 47 447 16 HOH HOH . N 10 HOH A 48 448 26 HOH HOH . N 10 HOH A 49 449 106 HOH HOH . N 10 HOH A 50 450 80 HOH HOH . N 10 HOH A 51 451 40 HOH HOH . N 10 HOH A 52 452 97 HOH HOH . N 10 HOH A 53 453 116 HOH HOH . O 10 HOH B 1 201 49 HOH HOH . O 10 HOH B 2 202 13 HOH HOH . O 10 HOH B 3 203 104 HOH HOH . O 10 HOH B 4 204 34 HOH HOH . O 10 HOH B 5 205 5 HOH HOH . O 10 HOH B 6 206 47 HOH HOH . O 10 HOH B 7 207 12 HOH HOH . O 10 HOH B 8 208 95 HOH HOH . O 10 HOH B 9 209 43 HOH HOH . O 10 HOH B 10 210 35 HOH HOH . O 10 HOH B 11 211 83 HOH HOH . O 10 HOH B 12 212 15 HOH HOH . O 10 HOH B 13 213 101 HOH HOH . O 10 HOH B 14 214 64 HOH HOH . O 10 HOH B 15 215 52 HOH HOH . O 10 HOH B 16 216 48 HOH HOH . O 10 HOH B 17 217 18 HOH HOH . O 10 HOH B 18 218 111 HOH HOH . O 10 HOH B 19 219 72 HOH HOH . O 10 HOH B 20 220 96 HOH HOH . O 10 HOH B 21 221 9 HOH HOH . O 10 HOH B 22 222 105 HOH HOH . O 10 HOH B 23 223 99 HOH HOH . O 10 HOH B 24 224 14 HOH HOH . O 10 HOH B 25 225 71 HOH HOH . O 10 HOH B 26 226 42 HOH HOH . O 10 HOH B 27 227 46 HOH HOH . O 10 HOH B 28 228 24 HOH HOH . O 10 HOH B 29 229 92 HOH HOH . O 10 HOH B 30 230 119 HOH HOH . O 10 HOH B 31 231 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 9 -19.274 7.047 -11.507 1 85.46 ? S SO4 317 A 1 HETATM 2 O O1 SO4 . . . J 9 -19.115 8.355 -12.086 1 82.7 ? O1 SO4 317 A 1 HETATM 3 O O2 SO4 . . . J 9 -19.793 6.147 -12.504 1 82.6 ? O2 SO4 317 A 1 HETATM 4 O O3 SO4 . . . J 9 -20.187 7.122 -10.396 1 81.05 ? O3 SO4 317 A 1 HETATM 5 O O4 SO4 . . . J 9 -18.001 6.564 -11.044 1 81.39 ? O4 SO4 317 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #