data_6OJS
#
_model_server_result.job_id            6r-YaOmELKSR-s5jXTJSlA 
_model_server_result.datetime_utc      '2024-10-12 02:30:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ojs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":604}' 
#
_entry.id    6OJS 
#
_exptl.entry_id    6OJS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.48 
_cell.angle_gamma         90 
_cell.entry_id            6OJS 
_cell.length_a            212.622 
_cell.length_b            116.188 
_cell.length_c            220.884 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OJS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F,G,H,I,N,O,P,Q 1 1 
B,E,J,K,L,M,V,W,X,Y 2 1 
D,R,S,T,U 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 M N N 
? 5 Q N N 
? 5 U N N 
? 5 Y N N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 286 n y 
N1 C8A MTX sing 287 n y 
C2 NA2 MTX sing 288 n n 
C2 N3 MTX sing 289 n y 
NA2 HN21 MTX sing 290 n n 
NA2 HN22 MTX sing 291 n n 
N3 C4 MTX doub 292 n y 
C4 NA4 MTX sing 293 n n 
C4 C4A MTX sing 294 n y 
NA4 HN41 MTX sing 295 n n 
NA4 HN42 MTX sing 296 n n 
C4A N5 MTX sing 297 n y 
C4A C8A MTX doub 298 n y 
N5 C6 MTX doub 299 n y 
C6 C7 MTX sing 300 n y 
C6 C9 MTX sing 301 n n 
C7 N8 MTX doub 302 n y 
C7 H7 MTX sing 303 n n 
N8 C8A MTX sing 304 n y 
C9 N10 MTX sing 305 n n 
C9 H91 MTX sing 306 n n 
C9 H92 MTX sing 307 n n 
N10 CM MTX sing 308 n n 
N10 C14 MTX sing 309 n n 
CM HM1 MTX sing 310 n n 
CM HM2 MTX sing 311 n n 
CM HM3 MTX sing 312 n n 
C11 C12 MTX doub 313 n y 
C11 C16 MTX sing 314 n y 
C11 C MTX sing 315 n n 
C12 C13 MTX sing 316 n y 
C12 H12 MTX sing 317 n n 
C13 C14 MTX doub 318 n y 
C13 H13 MTX sing 319 n n 
C14 C15 MTX sing 320 n y 
C15 C16 MTX doub 321 n y 
C15 H15 MTX sing 322 n n 
C16 H16 MTX sing 323 n n 
C O MTX doub 324 n n 
C N MTX sing 325 n n 
N CA MTX sing 326 n n 
N HN MTX sing 327 n n 
CA CT MTX sing 328 n n 
CA CB MTX sing 329 n n 
CA HA MTX sing 330 n n 
CT O1 MTX doub 331 n n 
CT O2 MTX sing 332 n n 
O2 HO2 MTX sing 333 n n 
CB CG MTX sing 334 n n 
CB HB1 MTX sing 335 n n 
CB HB2 MTX sing 336 n n 
CG CD MTX sing 337 n n 
CG HG1 MTX sing 338 n n 
CG HG2 MTX sing 339 n n 
CD OE1 MTX doub 340 n n 
CD OE2 MTX sing 341 n n 
OE2 HOE2 MTX sing 342 n n 
#
_atom_sites.entry_id                     6OJS 
_atom_sites.fract_transf_matrix[1][1]    0.004703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000452 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008607 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004548 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NDP A 1 601 601 NDP NDP . 
G 3 UFP A 1 602 602 UFP UFP . 
H 4 D96 A 1 603 603 D96 D96 . 
I 5 MTX A 1 604 604 MTX MTX . 
J 2 NDP B 1 601 601 NDP NDP . 
K 3 UFP B 1 602 602 UFP UFP . 
L 4 D96 B 1 603 603 D96 D96 . 
M 5 MTX B 1 604 604 MTX MTX . 
N 2 NDP C 1 601 601 NDP NDP . 
O 3 UFP C 1 602 602 UFP UFP . 
P 4 D96 C 1 603 603 D96 D96 . 
Q 5 MTX C 1 604 604 MTX MTX . 
R 2 NDP D 1 601 601 NDP NDP . 
S 3 UFP D 1 602 602 UFP UFP . 
T 4 D96 D 1 603 603 D96 D96 . 
U 5 MTX D 1 604 604 MTX MTX . 
V 2 NDP E 1 601 601 NDP NDP . 
W 3 UFP E 1 602 602 UFP UFP . 
X 4 D96 E 1 603 603 D96 D96 . 
Y 5 MTX E 1 604 604 MTX MTX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . I 5 -5.133 -42.761 95.025 1 76.82 ? N1 MTX 604 A 1 
HETATM 2 C C2 MTX . . . I 5 -5.888 -43.492 94.189 1 74.69 ? C2 MTX 604 A 1 
HETATM 3 N NA2 MTX . . . I 5 -7.314 -43.296 94.201 1 74.72 ? NA2 MTX 604 A 1 
HETATM 4 N N3 MTX . . . I 5 -5.356 -44.394 93.348 1 78.15 ? N3 MTX 604 A 1 
HETATM 5 C C4 MTX . . . I 5 -4.023 -44.596 93.317 1 74.93 ? C4 MTX 604 A 1 
HETATM 6 N NA4 MTX . . . I 5 -3.431 -45.547 92.433 1 74.07 ? NA4 MTX 604 A 1 
HETATM 7 C C4A MTX . . . I 5 -3.191 -43.85 94.178 1 73.67 ? C4A MTX 604 A 1 
HETATM 8 N N5 MTX . . . I 5 -1.84 -44.025 94.174 1 72.14 ? N5 MTX 604 A 1 
HETATM 9 C C6 MTX . . . I 5 -1.087 -43.286 95.012 1 74.68 ? C6 MTX 604 A 1 
HETATM 10 C C7 MTX . . . I 5 -1.65 -42.352 95.887 1 74.67 ? C7 MTX 604 A 1 
HETATM 11 N N8 MTX . . . I 5 -2.99 -42.191 95.877 1 78.35 ? N8 MTX 604 A 1 
HETATM 12 C C8A MTX . . . I 5 -3.774 -42.932 95.028 1 77.07 ? C8A MTX 604 A 1 
HETATM 13 C C9 MTX . . . I 5 0.404 -43.499 95 1 77.15 ? C9 MTX 604 A 1 
HETATM 14 N N10 MTX . . . I 5 0.768 -44.82 95.459 1 79.44 ? N10 MTX 604 A 1 
HETATM 15 C CM MTX . . . I 5 1.334 -45.777 94.545 1 77.75 ? CM MTX 604 A 1 
HETATM 16 C C11 MTX . . . I 5 -0.002 -45.874 99.478 1 68.31 ? C11 MTX 604 A 1 
HETATM 17 C C12 MTX . . . I 5 0.205 -44.543 99.137 1 70.26 ? C12 MTX 604 A 1 
HETATM 18 C C13 MTX . . . I 5 0.465 -44.198 97.816 1 68.74 ? C13 MTX 604 A 1 
HETATM 19 C C14 MTX . . . I 5 0.511 -45.183 96.84 1 72.84 ? C14 MTX 604 A 1 
HETATM 20 C C15 MTX . . . I 5 0.295 -46.513 97.179 1 73.73 ? C15 MTX 604 A 1 
HETATM 21 C C16 MTX . . . I 5 0.039 -46.856 98.501 1 69.45 ? C16 MTX 604 A 1 
HETATM 22 C C MTX . . . I 5 -0.293 -46.273 100.899 1 71.56 ? C MTX 604 A 1 
HETATM 23 O O MTX . . . I 5 0.194 -45.646 101.824 1 76.9 ? O MTX 604 A 1 
HETATM 24 N N MTX . . . I 5 -1.168 -47.391 101.159 1 69.03 ? N MTX 604 A 1 
HETATM 25 C CA MTX . . . I 5 -1.474 -47.797 102.499 1 75.51 ? CA MTX 604 A 1 
HETATM 26 C CT MTX . . . I 5 -1.982 -49.18 102.409 1 76.92 ? CT MTX 604 A 1 
HETATM 27 O O1 MTX . . . I 5 -2.135 -49.703 101.277 1 68.27 ? O1 MTX 604 A 1 
HETATM 28 O O2 MTX . . . I 5 -2.282 -49.829 103.455 1 82.8 ? O2 MTX 604 A 1 
HETATM 29 C CB MTX . . . I 5 -2.583 -46.934 102.988 1 75.02 ? CB MTX 604 A 1 
HETATM 30 C CG MTX . . . I 5 -2.607 -46.483 104.416 1 75.07 ? CG MTX 604 A 1 
HETATM 31 C CD MTX . . . I 5 -3.949 -46.112 104.96 1 81.08 ? CD MTX 604 A 1 
HETATM 32 O OE1 MTX . . . I 5 -4.78 -47.02 105.183 1 85 ? OE1 MTX 604 A 1 
HETATM 33 O OE2 MTX . . . I 5 -4.364 -44.932 104.821 1 79.17 ? OE2 MTX 604 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#