data_6OJU
#
_model_server_result.job_id            WOSsLAKk2nWMkL2hPNJ7BQ 
_model_server_result.datetime_utc      '2024-10-12 02:18:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oju 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":600}' 
#
_entry.id    6OJU 
#
_exptl.entry_id    6OJU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.182 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.12 
_cell.angle_gamma         90 
_cell.entry_id            6OJU 
_cell.length_a            62.097 
_cell.length_b            124.853 
_cell.length_c            80.364 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6OJU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
PISA monomeric 1 software_defined_assembly 5 
PISA monomeric 1 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K,L,M,P 1 1 
B,C,G,H,I,J,N,O 2 1 
A,E,F,M 3 1 
B,G,H,N 4 1 
C,I,J,O 5 1 
D,K,L,P 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C9 H13 N2 O8 P' 
_chem_comp.formula_weight    308.182 
_chem_comp.id                UMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DUMP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UMP sing 409 n n 
N1 C6 UMP sing 410 n n 
N1 C1' UMP sing 411 n n 
C2 N3 UMP sing 412 n n 
C2 O2 UMP doub 413 n n 
N3 C4 UMP sing 414 n n 
N3 HN3 UMP sing 415 n n 
C4 C5 UMP sing 416 n n 
C4 O4 UMP doub 417 n n 
C5 C6 UMP doub 418 n n 
C5 H5 UMP sing 419 n n 
C6 H6 UMP sing 420 n n 
C1' C2' UMP sing 421 n n 
C1' O4' UMP sing 422 n n 
C1' H1' UMP sing 423 n n 
C2' C3' UMP sing 424 n n 
C2' H2' UMP sing 425 n n 
C2' "H2''" UMP sing 426 n n 
C3' C4' UMP sing 427 n n 
C3' O3' UMP sing 428 n n 
C3' H3' UMP sing 429 n n 
C4' O4' UMP sing 430 n n 
C4' C5' UMP sing 431 n n 
C4' H4' UMP sing 432 n n 
O3' HO3' UMP sing 433 n n 
C5' O5' UMP sing 434 n n 
C5' H5' UMP sing 435 n n 
C5' "H5''" UMP sing 436 n n 
O5' P UMP sing 437 n n 
P OP1 UMP doub 438 n n 
P OP2 UMP sing 439 n n 
P OP3 UMP sing 440 n n 
OP2 HOP2 UMP sing 441 n n 
OP3 HOP3 UMP sing 442 n n 
#
_atom_sites.entry_id                     6OJU 
_atom_sites.fract_transf_matrix[1][1]    0.016104 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000596 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UMP B 1 600 600 UMP UMP . 
F 3 D96 B 1 601 601 D96 D96 . 
G 2 UMP A 1 600 600 UMP UMP . 
H 3 D96 A 1 601 601 D96 D96 . 
I 2 UMP C 1 600 600 UMP UMP . 
J 3 D96 C 1 601 601 D96 D96 . 
K 2 UMP D 1 600 600 UMP UMP . 
L 3 D96 D 1 601 601 D96 D96 . 
M 4 HOH B 1 701 12 HOH HOH . 
M 4 HOH B 2 702 38 HOH HOH . 
M 4 HOH B 3 703 3 HOH HOH . 
M 4 HOH B 4 704 25 HOH HOH . 
M 4 HOH B 5 705 20 HOH HOH . 
M 4 HOH B 6 706 7 HOH HOH . 
M 4 HOH B 7 707 9 HOH HOH . 
N 4 HOH A 1 701 13 HOH HOH . 
N 4 HOH A 2 702 30 HOH HOH . 
N 4 HOH A 3 703 18 HOH HOH . 
N 4 HOH A 4 704 16 HOH HOH . 
N 4 HOH A 5 705 4 HOH HOH . 
N 4 HOH A 6 706 17 HOH HOH . 
N 4 HOH A 7 707 2 HOH HOH . 
O 4 HOH C 1 701 14 HOH HOH . 
O 4 HOH C 2 702 24 HOH HOH . 
O 4 HOH C 3 703 8 HOH HOH . 
O 4 HOH C 4 704 15 HOH HOH . 
O 4 HOH C 5 705 34 HOH HOH . 
O 4 HOH C 6 706 23 HOH HOH . 
O 4 HOH C 7 707 37 HOH HOH . 
O 4 HOH C 8 708 11 HOH HOH . 
O 4 HOH C 9 709 36 HOH HOH . 
O 4 HOH C 10 710 1 HOH HOH . 
P 4 HOH D 1 701 27 HOH HOH . 
P 4 HOH D 2 702 31 HOH HOH . 
P 4 HOH D 3 703 35 HOH HOH . 
P 4 HOH D 4 704 28 HOH HOH . 
P 4 HOH D 5 705 5 HOH HOH . 
P 4 HOH D 6 706 22 HOH HOH . 
P 4 HOH D 7 707 19 HOH HOH . 
P 4 HOH D 8 708 26 HOH HOH . 
P 4 HOH D 9 709 29 HOH HOH . 
P 4 HOH D 10 710 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UMP . . . G 2 215.791 -134.903 103.297 1 53.17 ? N1 UMP 600 A 1 
HETATM 2 C C2 UMP . . . G 2 216.819 -135.828 103.007 1 46.49 ? C2 UMP 600 A 1 
HETATM 3 N N3 UMP . . . G 2 217.993 -135.732 103.753 1 48.28 ? N3 UMP 600 A 1 
HETATM 4 C C4 UMP . . . G 2 218.242 -134.799 104.76 1 51.62 ? C4 UMP 600 A 1 
HETATM 5 C C5 UMP . . . G 2 217.145 -133.874 105.011 1 56.22 ? C5 UMP 600 A 1 
HETATM 6 C C6 UMP . . . G 2 216.004 -133.954 104.286 1 60.67 ? C6 UMP 600 A 1 
HETATM 7 O O2 UMP . . . G 2 216.719 -136.694 102.142 1 50.65 ? O2 UMP 600 A 1 
HETATM 8 O O4 UMP . . . G 2 219.316 -134.801 105.356 1 46.63 ? O4 UMP 600 A 1 
HETATM 9 C C1' UMP . . . G 2 214.481 -134.926 102.54 1 56.56 ? C1' UMP 600 A 1 
HETATM 10 C C2' UMP . . . G 2 213.683 -136.226 102.675 1 50.21 ? C2' UMP 600 A 1 
HETATM 11 C C3' UMP . . . G 2 212.29 -135.708 102.365 1 53.32 ? C3' UMP 600 A 1 
HETATM 12 C C4' UMP . . . G 2 212.291 -134.292 102.962 1 50.05 ? C4' UMP 600 A 1 
HETATM 13 O O3' UMP . . . G 2 212.061 -135.709 100.97 1 51.73 ? O3' UMP 600 A 1 
HETATM 14 O O4' UMP . . . G 2 213.666 -133.924 103.057 1 52.76 ? O4' UMP 600 A 1 
HETATM 15 C C5' UMP . . . G 2 211.64 -134.214 104.356 1 46.98 ? C5' UMP 600 A 1 
HETATM 16 O O5' UMP . . . G 2 210.229 -134.372 104.33 1 51.41 ? O5' UMP 600 A 1 
HETATM 17 P P UMP . . . G 2 209.446 -135.422 105.296 1 50.08 ? P UMP 600 A 1 
HETATM 18 O OP1 UMP . . . G 2 210.241 -136.808 105.027 1 48.43 -1 OP1 UMP 600 A 1 
HETATM 19 O OP2 UMP . . . G 2 207.967 -135.51 105.136 1 55.72 ? OP2 UMP 600 A 1 
HETATM 20 O OP3 UMP . . . G 2 209.986 -134.98 106.758 1 45.4 -1 OP3 UMP 600 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#