data_6OJU # _model_server_result.job_id H9MT6DQCijaaGzuUv0IRAQ _model_server_result.datetime_utc '2024-10-12 02:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6OJU # _exptl.entry_id 6OJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.384 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}-D-glutamic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.12 _cell.angle_gamma 90 _cell.entry_id 6OJU _cell.length_a 62.097 _cell.length_b 124.853 _cell.length_c 80.364 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 PISA monomeric 1 software_defined_assembly 5 PISA monomeric 1 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,K,L,M,P 1 1 B,C,G,H,I,J,N,O 2 1 A,E,F,M 3 1 B,G,H,N 4 1 C,I,J,O 5 1 D,K,L,P 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C19 H19 N5 O6' _chem_comp.formula_weight 413.384 _chem_comp.id D96 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}-D-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C19 D96 doub 83 n n O4 C17 D96 doub 84 n n C19 O6 D96 sing 85 n n C19 C18 D96 sing 86 n n C17 C15 D96 sing 87 n n C17 O3 D96 sing 88 n n C15 C16 D96 sing 89 n n C15 N5 D96 sing 90 n n C16 C18 D96 sing 91 n n O2 C14 D96 doub 92 n n N5 C14 D96 sing 93 n n C14 C11 D96 sing 94 n n C11 C12 D96 doub 95 n y C11 C10 D96 sing 96 n y C12 C13 D96 sing 97 n y N4 C4 D96 sing 98 n n C10 C9 D96 doub 99 n y N2 C4 D96 sing 100 n n N2 C3 D96 sing 101 n n O1 C3 D96 doub 102 n n C4 N1 D96 doub 103 n n C3 C2 D96 sing 104 n n C13 C8 D96 doub 105 n y C9 C8 D96 sing 106 n y C8 C7 D96 sing 107 n n N1 C1 D96 sing 108 n n C2 C1 D96 doub 109 n y C2 C5 D96 sing 110 n y C1 N3 D96 sing 111 n y C5 C7 D96 sing 112 n n C5 C6 D96 doub 113 n y N3 C6 D96 sing 114 n y N2 H1 D96 sing 115 n n C6 H2 D96 sing 116 n n N3 H3 D96 sing 117 n n N4 H4 D96 sing 118 n n N4 H5 D96 sing 119 n n C7 H6 D96 sing 120 n n C7 H7 D96 sing 121 n n C9 H8 D96 sing 122 n n C10 H9 D96 sing 123 n n C12 H10 D96 sing 124 n n C13 H11 D96 sing 125 n n N5 H12 D96 sing 126 n n C15 H13 D96 sing 127 n n C16 H14 D96 sing 128 n n C16 H15 D96 sing 129 n n O3 H16 D96 sing 130 n n C18 H17 D96 sing 131 n n C18 H18 D96 sing 132 n n O6 H19 D96 sing 133 n n # _atom_sites.entry_id 6OJU _atom_sites.fract_transf_matrix[1][1] 0.016104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000596 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UMP B 1 600 600 UMP UMP . F 3 D96 B 1 601 601 D96 D96 . G 2 UMP A 1 600 600 UMP UMP . H 3 D96 A 1 601 601 D96 D96 . I 2 UMP C 1 600 600 UMP UMP . J 3 D96 C 1 601 601 D96 D96 . K 2 UMP D 1 600 600 UMP UMP . L 3 D96 D 1 601 601 D96 D96 . M 4 HOH B 1 701 12 HOH HOH . M 4 HOH B 2 702 38 HOH HOH . M 4 HOH B 3 703 3 HOH HOH . M 4 HOH B 4 704 25 HOH HOH . M 4 HOH B 5 705 20 HOH HOH . M 4 HOH B 6 706 7 HOH HOH . M 4 HOH B 7 707 9 HOH HOH . N 4 HOH A 1 701 13 HOH HOH . N 4 HOH A 2 702 30 HOH HOH . N 4 HOH A 3 703 18 HOH HOH . N 4 HOH A 4 704 16 HOH HOH . N 4 HOH A 5 705 4 HOH HOH . N 4 HOH A 6 706 17 HOH HOH . N 4 HOH A 7 707 2 HOH HOH . O 4 HOH C 1 701 14 HOH HOH . O 4 HOH C 2 702 24 HOH HOH . O 4 HOH C 3 703 8 HOH HOH . O 4 HOH C 4 704 15 HOH HOH . O 4 HOH C 5 705 34 HOH HOH . O 4 HOH C 6 706 23 HOH HOH . O 4 HOH C 7 707 37 HOH HOH . O 4 HOH C 8 708 11 HOH HOH . O 4 HOH C 9 709 36 HOH HOH . O 4 HOH C 10 710 1 HOH HOH . P 4 HOH D 1 701 27 HOH HOH . P 4 HOH D 2 702 31 HOH HOH . P 4 HOH D 3 703 35 HOH HOH . P 4 HOH D 4 704 28 HOH HOH . P 4 HOH D 5 705 5 HOH HOH . P 4 HOH D 6 706 22 HOH HOH . P 4 HOH D 7 707 19 HOH HOH . P 4 HOH D 8 708 26 HOH HOH . P 4 HOH D 9 709 29 HOH HOH . P 4 HOH D 10 710 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 D96 . . . F 3 238.777 -103.148 73.976 1 43.07 ? N1 D96 601 B 1 HETATM 2 C C1 D96 . . . F 3 239.039 -103.482 75.27 1 50.69 ? C1 D96 601 B 1 HETATM 3 C C2 D96 . . . F 3 240.221 -103.225 75.956 1 44 ? C2 D96 601 B 1 HETATM 4 C C3 D96 . . . F 3 241.299 -102.539 75.254 1 40.03 ? C3 D96 601 B 1 HETATM 5 N N2 D96 . . . F 3 240.929 -102.255 73.968 1 37.53 ? N2 D96 601 B 1 HETATM 6 C C4 D96 . . . F 3 239.729 -102.541 73.347 1 39 ? C4 D96 601 B 1 HETATM 7 C C5 D96 . . . F 3 240.069 -103.738 77.255 1 50.39 ? C5 D96 601 B 1 HETATM 8 C C6 D96 . . . F 3 238.791 -104.289 77.333 1 64.19 ? C6 D96 601 B 1 HETATM 9 N N3 D96 . . . F 3 238.176 -104.127 76.111 1 58.82 ? N3 D96 601 B 1 HETATM 10 O O1 D96 . . . F 3 242.409 -102.225 75.677 1 41.33 ? O1 D96 601 B 1 HETATM 11 N N4 D96 . . . F 3 239.579 -102.128 71.956 1 43.81 ? N4 D96 601 B 1 HETATM 12 C C7 D96 . . . F 3 241.088 -103.679 78.355 1 42.47 ? C7 D96 601 B 1 HETATM 13 C C8 D96 . . . F 3 241.148 -102.257 78.816 1 54.96 ? C8 D96 601 B 1 HETATM 14 C C9 D96 . . . F 3 239.992 -101.492 78.745 1 61.95 ? C9 D96 601 B 1 HETATM 15 C C10 D96 . . . F 3 240.005 -100.171 79.159 1 59.91 ? C10 D96 601 B 1 HETATM 16 C C11 D96 . . . F 3 241.177 -99.616 79.647 1 62.4 ? C11 D96 601 B 1 HETATM 17 C C12 D96 . . . F 3 242.341 -100.375 79.717 1 46.9 ? C12 D96 601 B 1 HETATM 18 C C13 D96 . . . F 3 242.327 -101.701 79.3 1 44.65 ? C13 D96 601 B 1 HETATM 19 C C14 D96 . . . F 3 241.167 -98.182 80.078 1 66.26 ? C14 D96 601 B 1 HETATM 20 O O2 D96 . . . F 3 240.161 -97.479 80.161 1 62.55 ? O2 D96 601 B 1 HETATM 21 N N5 D96 . . . F 3 242.401 -97.754 80.334 1 55.52 ? N5 D96 601 B 1 HETATM 22 C C15 D96 . . . F 3 242.804 -96.418 80.761 1 73 ? C15 D96 601 B 1 HETATM 23 C C16 D96 . . . F 3 244.217 -96.499 81.257 1 67.36 ? C16 D96 601 B 1 HETATM 24 C C17 D96 . . . F 3 241.901 -95.897 81.842 1 84.32 ? C17 D96 601 B 1 HETATM 25 O O3 D96 . . . F 3 241.309 -96.553 82.692 1 88 ? O3 D96 601 B 1 HETATM 26 O O4 D96 . . . F 3 241.811 -94.544 81.743 1 77.4 -1 O4 D96 601 B 1 HETATM 27 C C18 D96 . . . F 3 244.994 -97.409 80.353 1 55.75 ? C18 D96 601 B 1 HETATM 28 C C19 D96 . . . F 3 246.331 -96.789 80.08 1 53.13 ? C19 D96 601 B 1 HETATM 29 O O5 D96 . . . F 3 246.757 -95.731 80.526 1 63.1 ? O5 D96 601 B 1 HETATM 30 O O6 D96 . . . F 3 247.037 -97.579 79.235 1 56.1 -1 O6 D96 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #