data_6OJZ
#
_model_server_result.job_id            0M3s2HzUOgeQQXCM5b7kQw 
_model_server_result.datetime_utc      '2024-11-27 15:36:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ojz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    6OJZ 
#
_exptl.entry_id    6OJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OJZ 
_cell.length_a            112.335 
_cell.length_b            121.134 
_cell.length_c            187.112 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6OJZ 
_atom_sites.fract_transf_matrix[1][1]    0.008902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005344 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP A 1 401 6 ADP ADP . 
H 2 ADP B 1 401 7 ADP ADP . 
I 2 ADP C 1 401 5 ADP ADP . 
J 2 ADP D 1 401 2 ADP ADP . 
K 2 ADP E 1 401 4 ADP ADP . 
L 2 ADP F 1 401 3 ADP ADP . 
M 3 HOH A 1 501 33 HOH HOH . 
M 3 HOH A 2 502 34 HOH HOH . 
M 3 HOH A 3 503 54 HOH HOH . 
M 3 HOH A 4 504 40 HOH HOH . 
M 3 HOH A 5 505 48 HOH HOH . 
M 3 HOH A 6 506 57 HOH HOH . 
M 3 HOH A 7 507 62 HOH HOH . 
M 3 HOH A 8 508 52 HOH HOH . 
M 3 HOH A 9 509 53 HOH HOH . 
M 3 HOH A 10 510 50 HOH HOH . 
N 3 HOH B 1 501 2 HOH HOH . 
N 3 HOH B 2 502 38 HOH HOH . 
N 3 HOH B 3 503 3 HOH HOH . 
N 3 HOH B 4 504 10 HOH HOH . 
N 3 HOH B 5 505 1 HOH HOH . 
O 3 HOH C 1 501 31 HOH HOH . 
O 3 HOH C 2 502 7 HOH HOH . 
O 3 HOH C 3 503 37 HOH HOH . 
O 3 HOH C 4 504 59 HOH HOH . 
O 3 HOH C 5 505 43 HOH HOH . 
O 3 HOH C 6 506 16 HOH HOH . 
O 3 HOH C 7 507 5 HOH HOH . 
O 3 HOH C 8 508 4 HOH HOH . 
O 3 HOH C 9 509 8 HOH HOH . 
O 3 HOH C 10 510 9 HOH HOH . 
O 3 HOH C 11 511 32 HOH HOH . 
O 3 HOH C 12 512 51 HOH HOH . 
P 3 HOH D 1 501 20 HOH HOH . 
P 3 HOH D 2 502 55 HOH HOH . 
P 3 HOH D 3 503 60 HOH HOH . 
P 3 HOH D 4 504 18 HOH HOH . 
P 3 HOH D 5 505 14 HOH HOH . 
P 3 HOH D 6 506 46 HOH HOH . 
P 3 HOH D 7 507 15 HOH HOH . 
P 3 HOH D 8 508 17 HOH HOH . 
P 3 HOH D 9 509 21 HOH HOH . 
P 3 HOH D 10 510 58 HOH HOH . 
Q 3 HOH E 1 501 41 HOH HOH . 
Q 3 HOH E 2 502 39 HOH HOH . 
Q 3 HOH E 3 503 61 HOH HOH . 
Q 3 HOH E 4 504 23 HOH HOH . 
Q 3 HOH E 5 505 42 HOH HOH . 
Q 3 HOH E 6 506 25 HOH HOH . 
Q 3 HOH E 7 507 36 HOH HOH . 
Q 3 HOH E 8 508 56 HOH HOH . 
R 3 HOH F 1 501 45 HOH HOH . 
R 3 HOH F 2 502 24 HOH HOH . 
R 3 HOH F 3 503 29 HOH HOH . 
R 3 HOH F 4 504 49 HOH HOH . 
R 3 HOH F 5 505 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . J 2 7.755 -26.676 -81.612 0.82 81.17 ? PB ADP 401 D 1 
HETATM 2 O O1B ADP . . . J 2 6.626 -25.661 -81.316 0.82 80.6 ? O1B ADP 401 D 1 
HETATM 3 O O2B ADP . . . J 2 9.088 -26.086 -81.149 0.82 79.94 -1 O2B ADP 401 D 1 
HETATM 4 O O3B ADP . . . J 2 7.548 -27.974 -80.882 0.82 80.78 ? O3B ADP 401 D 1 
HETATM 5 P PA ADP . . . J 2 7.751 -25.941 -84.502 0.82 85.02 ? PA ADP 401 D 1 
HETATM 6 O O1A ADP . . . J 2 6.303 -25.734 -84.931 0.82 85.95 -1 O1A ADP 401 D 1 
HETATM 7 O O2A ADP . . . J 2 8.378 -24.57 -84.141 0.82 83.78 ? O2A ADP 401 D 1 
HETATM 8 O O3A ADP . . . J 2 7.79 -27.015 -83.223 0.82 83.63 ? O3A ADP 401 D 1 
HETATM 9 O O5' ADP . . . J 2 8.661 -26.659 -85.712 0.82 86.86 ? O5' ADP 401 D 1 
HETATM 10 C C5' ADP . . . J 2 10.024 -26.239 -85.947 0.82 86.71 ? C5' ADP 401 D 1 
HETATM 11 C C4' ADP . . . J 2 10.194 -25.999 -87.449 0.82 88.76 ? C4' ADP 401 D 1 
HETATM 12 O O4' ADP . . . J 2 9.974 -27.15 -88.073 0.82 90.21 ? O4' ADP 401 D 1 
HETATM 13 C C3' ADP . . . J 2 9.131 -24.953 -87.959 0.82 89.33 ? C3' ADP 401 D 1 
HETATM 14 O O3' ADP . . . J 2 9.664 -23.774 -88.43 0.82 89.46 ? O3' ADP 401 D 1 
HETATM 15 C C2' ADP . . . J 2 8.279 -25.697 -89.032 0.82 91.42 ? C2' ADP 401 D 1 
HETATM 16 O O2' ADP . . . J 2 8.194 -24.955 -90.262 0.82 92.97 ? O2' ADP 401 D 1 
HETATM 17 C C1' ADP . . . J 2 8.841 -26.9 -89.211 0.82 92.05 ? C1' ADP 401 D 1 
HETATM 18 N N9 ADP . . . J 2 7.856 -27.917 -89.065 0.82 92.54 ? N9 ADP 401 D 1 
HETATM 19 C C8 ADP . . . J 2 6.927 -27.972 -88.11 0.82 91.42 ? C8 ADP 401 D 1 
HETATM 20 N N7 ADP . . . J 2 6.193 -29.07 -88.305 0.82 92.46 ? N7 ADP 401 D 1 
HETATM 21 C C5 ADP . . . J 2 6.683 -29.705 -89.392 0.82 94.23 ? C5 ADP 401 D 1 
HETATM 22 C C6 ADP . . . J 2 6.301 -30.881 -90.03 0.82 95.9 ? C6 ADP 401 D 1 
HETATM 23 N N6 ADP . . . J 2 5.222 -31.831 -89.711 0.82 96.3 ? N6 ADP 401 D 1 
HETATM 24 N N1 ADP . . . J 2 6.96 -31.286 -91.105 0.82 97.5 ? N1 ADP 401 D 1 
HETATM 25 C C2 ADP . . . J 2 8.019 -30.557 -91.592 0.82 97.53 ? C2 ADP 401 D 1 
HETATM 26 N N3 ADP . . . J 2 8.396 -29.416 -90.974 0.82 95.93 ? N3 ADP 401 D 1 
HETATM 27 C C4 ADP . . . J 2 7.713 -28.993 -89.866 0.82 94.27 ? C4 ADP 401 D 1 
#
_model_server_stats.io_time_ms              122 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#