data_6OKF # _model_server_result.job_id Hzduqhl2f1Lkg2Vw6Rz-cA _model_server_result.datetime_utc '2024-10-19 09:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6okf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6OKF # _exptl.entry_id 6OKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.64 _cell.angle_gamma 90 _cell.entry_id 6OKF _cell.length_a 58.939 _cell.length_b 100.781 _cell.length_c 79.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 163 A CYS 163 1_555 F C3 MRJ . A MRJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale2 F P24 MRJ . A MRJ 502 1_555 D OG SER 37 D SER 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale3 B SG CYS 163 B CYS 163 1_555 H C3 MRJ . B MRJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? covale ? covale4 H P24 MRJ . B MRJ 502 1_555 C OG SER 37 C SER 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 A O ASN 296 A ASN 296 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 A OD1 ASN 296 A ASN 296 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 A O SER 297 A SER 297 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc4 A OE1 GLU 342 A GLU 342 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 A OG SER 387 A SER 387 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc6 A O ASN 388 A ASN 388 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc7 B O ASN 296 B ASN 296 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc8 B OD1 ASN 296 B ASN 296 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc9 B OE1 GLU 342 B GLU 342 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc10 B OG SER 387 B SER 387 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc11 B O ASN 388 B ASN 388 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OKF _atom_sites.fract_transf_matrix[1][1] 0.016967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005723 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 501 1 NA NA . F 4 MRJ A 1 502 1 MRJ PNS . G 3 NA B 1 501 2 NA NA . H 4 MRJ B 1 502 2 MRJ PNS . I 5 HOH A 1 601 18 HOH HOH . I 5 HOH A 2 602 82 HOH HOH . I 5 HOH A 3 603 11 HOH HOH . I 5 HOH A 4 604 47 HOH HOH . I 5 HOH A 5 605 19 HOH HOH . I 5 HOH A 6 606 31 HOH HOH . I 5 HOH A 7 607 97 HOH HOH . I 5 HOH A 8 608 61 HOH HOH . I 5 HOH A 9 609 39 HOH HOH . I 5 HOH A 10 610 101 HOH HOH . I 5 HOH A 11 611 46 HOH HOH . I 5 HOH A 12 612 10 HOH HOH . I 5 HOH A 13 613 13 HOH HOH . I 5 HOH A 14 614 30 HOH HOH . I 5 HOH A 15 615 22 HOH HOH . I 5 HOH A 16 616 92 HOH HOH . I 5 HOH A 17 617 80 HOH HOH . I 5 HOH A 18 618 21 HOH HOH . I 5 HOH A 19 619 25 HOH HOH . I 5 HOH A 20 620 2 HOH HOH . I 5 HOH A 21 621 35 HOH HOH . I 5 HOH A 22 622 52 HOH HOH . I 5 HOH A 23 623 20 HOH HOH . I 5 HOH A 24 624 87 HOH HOH . I 5 HOH A 25 625 44 HOH HOH . I 5 HOH A 26 626 3 HOH HOH . I 5 HOH A 27 627 17 HOH HOH . I 5 HOH A 28 628 5 HOH HOH . I 5 HOH A 29 629 51 HOH HOH . I 5 HOH A 30 630 81 HOH HOH . I 5 HOH A 31 631 99 HOH HOH . I 5 HOH A 32 632 63 HOH HOH . I 5 HOH A 33 633 28 HOH HOH . I 5 HOH A 34 634 68 HOH HOH . I 5 HOH A 35 635 8 HOH HOH . I 5 HOH A 36 636 58 HOH HOH . I 5 HOH A 37 637 100 HOH HOH . I 5 HOH A 38 638 54 HOH HOH . I 5 HOH A 39 639 32 HOH HOH . I 5 HOH A 40 640 29 HOH HOH . I 5 HOH A 41 641 70 HOH HOH . I 5 HOH A 42 642 103 HOH HOH . I 5 HOH A 43 643 16 HOH HOH . I 5 HOH A 44 644 94 HOH HOH . I 5 HOH A 45 645 36 HOH HOH . I 5 HOH A 46 646 75 HOH HOH . I 5 HOH A 47 647 59 HOH HOH . I 5 HOH A 48 648 77 HOH HOH . I 5 HOH A 49 649 42 HOH HOH . I 5 HOH A 50 650 33 HOH HOH . I 5 HOH A 51 651 95 HOH HOH . I 5 HOH A 52 652 90 HOH HOH . I 5 HOH A 53 653 108 HOH HOH . I 5 HOH A 54 654 102 HOH HOH . I 5 HOH A 55 655 83 HOH HOH . I 5 HOH A 56 656 69 HOH HOH . I 5 HOH A 57 657 40 HOH HOH . I 5 HOH A 58 658 38 HOH HOH . I 5 HOH A 59 659 105 HOH HOH . I 5 HOH A 60 660 106 HOH HOH . I 5 HOH A 61 661 107 HOH HOH . J 5 HOH B 1 601 57 HOH HOH . J 5 HOH B 2 602 73 HOH HOH . J 5 HOH B 3 603 79 HOH HOH . J 5 HOH B 4 604 62 HOH HOH . J 5 HOH B 5 605 64 HOH HOH . J 5 HOH B 6 606 96 HOH HOH . J 5 HOH B 7 607 98 HOH HOH . J 5 HOH B 8 608 49 HOH HOH . J 5 HOH B 9 609 88 HOH HOH . J 5 HOH B 10 610 9 HOH HOH . J 5 HOH B 11 611 6 HOH HOH . J 5 HOH B 12 612 12 HOH HOH . J 5 HOH B 13 613 26 HOH HOH . J 5 HOH B 14 614 27 HOH HOH . J 5 HOH B 15 615 24 HOH HOH . J 5 HOH B 16 616 104 HOH HOH . J 5 HOH B 17 617 4 HOH HOH . J 5 HOH B 18 618 91 HOH HOH . J 5 HOH B 19 619 67 HOH HOH . J 5 HOH B 20 620 85 HOH HOH . J 5 HOH B 21 621 84 HOH HOH . J 5 HOH B 22 622 43 HOH HOH . J 5 HOH B 23 623 7 HOH HOH . J 5 HOH B 24 624 50 HOH HOH . J 5 HOH B 25 625 78 HOH HOH . J 5 HOH B 26 626 56 HOH HOH . J 5 HOH B 27 627 76 HOH HOH . J 5 HOH B 28 628 23 HOH HOH . J 5 HOH B 29 629 45 HOH HOH . J 5 HOH B 30 630 60 HOH HOH . J 5 HOH B 31 631 53 HOH HOH . J 5 HOH B 32 632 86 HOH HOH . J 5 HOH B 33 633 41 HOH HOH . J 5 HOH B 34 634 93 HOH HOH . J 5 HOH B 35 635 72 HOH HOH . J 5 HOH B 36 636 14 HOH HOH . J 5 HOH B 37 637 66 HOH HOH . J 5 HOH B 38 638 37 HOH HOH . J 5 HOH B 39 639 15 HOH HOH . J 5 HOH B 40 640 89 HOH HOH . J 5 HOH B 41 641 55 HOH HOH . J 5 HOH B 42 642 34 HOH HOH . J 5 HOH B 43 643 65 HOH HOH . J 5 HOH B 44 644 74 HOH HOH . K 5 HOH C 1 201 71 HOH HOH . L 5 HOH D 1 201 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 51.994 _atom_site.Cartn_y 4.553 _atom_site.Cartn_z 80.252 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #