data_6OKF # _model_server_result.job_id ZlqbwJ7bWtXCG96br-Qexg _model_server_result.datetime_utc '2024-10-19 09:44:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6okf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 6OKF # _exptl.entry_id 6OKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.6 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(dodecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.64 _cell.angle_gamma 90 _cell.entry_id 6OKF _cell.length_a 58.939 _cell.length_b 100.781 _cell.length_c 79.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 163 A CYS 163 1_555 F C3 MRJ . A MRJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale2 F P24 MRJ . A MRJ 502 1_555 D OG SER 37 D SER 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale3 B SG CYS 163 B CYS 163 1_555 H C3 MRJ . B MRJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? covale ? covale4 H P24 MRJ . B MRJ 502 1_555 C OG SER 37 C SER 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 A O ASN 296 A ASN 296 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 A OD1 ASN 296 A ASN 296 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 A O SER 297 A SER 297 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc4 A OE1 GLU 342 A GLU 342 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 A OG SER 387 A SER 387 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc6 A O ASN 388 A ASN 388 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc7 B O ASN 296 B ASN 296 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc8 B OD1 ASN 296 B ASN 296 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc9 B OE1 GLU 342 B GLU 342 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc10 B OG SER 387 B SER 387 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc11 B O ASN 388 B ASN 388 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? # _chem_comp.formula 'C23 H46 N3 O8 P' _chem_comp.formula_weight 523.6 _chem_comp.id MRJ _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(dodecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 MRJ sing 237 n n C11 C12 MRJ sing 238 n n C10 C9 MRJ sing 239 n n C13 C12 MRJ sing 240 n n C9 C8 MRJ sing 241 n n C8 C7 MRJ sing 242 n n C7 C6 MRJ sing 243 n n C6 C5 MRJ sing 244 n n C5 C4 MRJ sing 245 n n C4 C3 MRJ sing 246 n n C3 C2 MRJ sing 247 n n O14 C2 MRJ doub 248 n n C2 N1 MRJ sing 249 n n N1 C43 MRJ sing 250 n n C43 C42 MRJ sing 251 n n C42 N41 MRJ sing 252 n n N41 C39 MRJ sing 253 n n C39 C38 MRJ sing 254 n n C39 O40 MRJ doub 255 n n C38 C37 MRJ sing 256 n n C30 C29 MRJ sing 257 n n C37 N36 MRJ sing 258 n n N36 C34 MRJ sing 259 n n C29 C31 MRJ sing 260 n n C29 C28 MRJ sing 261 n n C29 C32 MRJ sing 262 n n C28 O27 MRJ sing 263 n n C34 C32 MRJ sing 264 n n C34 O35 MRJ doub 265 n n O33 C32 MRJ sing 266 n n O27 P24 MRJ sing 267 n n O23 P24 MRJ sing 268 n n P24 O25 MRJ sing 269 n n O23 H1 MRJ sing 270 n n O25 H2 MRJ sing 271 n n C28 H3 MRJ sing 272 n n C28 H4 MRJ sing 273 n n C30 H5 MRJ sing 274 n n C30 H6 MRJ sing 275 n n C30 H7 MRJ sing 276 n n C31 H8 MRJ sing 277 n n C31 H9 MRJ sing 278 n n C31 H10 MRJ sing 279 n n C32 H11 MRJ sing 280 n n O33 H12 MRJ sing 281 n n N36 H13 MRJ sing 282 n n C37 H14 MRJ sing 283 n n C37 H15 MRJ sing 284 n n C38 H16 MRJ sing 285 n n C38 H17 MRJ sing 286 n n N41 H18 MRJ sing 287 n n C42 H19 MRJ sing 288 n n C42 H20 MRJ sing 289 n n C43 H21 MRJ sing 290 n n C43 H22 MRJ sing 291 n n C10 H23 MRJ sing 292 n n C10 H24 MRJ sing 293 n n C11 H25 MRJ sing 294 n n C11 H26 MRJ sing 295 n n C12 H27 MRJ sing 296 n n C12 H28 MRJ sing 297 n n C13 H29 MRJ sing 298 n n C13 H30 MRJ sing 299 n n C13 H31 MRJ sing 300 n n C3 H32 MRJ sing 301 n n C3 H33 MRJ sing 302 n n C4 H34 MRJ sing 303 n n C4 H35 MRJ sing 304 n n C5 H36 MRJ sing 305 n n C5 H37 MRJ sing 306 n n C6 H38 MRJ sing 307 n n C6 H39 MRJ sing 308 n n C7 H40 MRJ sing 309 n n C7 H41 MRJ sing 310 n n C8 H42 MRJ sing 311 n n C8 H43 MRJ sing 312 n n C9 H44 MRJ sing 313 n n C9 H45 MRJ sing 314 n n N1 H46 MRJ sing 315 n n P24 O1 MRJ doub 316 n n # _atom_sites.entry_id 6OKF _atom_sites.fract_transf_matrix[1][1] 0.016967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005723 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 501 1 NA NA . F 4 MRJ A 1 502 1 MRJ PNS . G 3 NA B 1 501 2 NA NA . H 4 MRJ B 1 502 2 MRJ PNS . I 5 HOH A 1 601 18 HOH HOH . I 5 HOH A 2 602 82 HOH HOH . I 5 HOH A 3 603 11 HOH HOH . I 5 HOH A 4 604 47 HOH HOH . I 5 HOH A 5 605 19 HOH HOH . I 5 HOH A 6 606 31 HOH HOH . I 5 HOH A 7 607 97 HOH HOH . I 5 HOH A 8 608 61 HOH HOH . I 5 HOH A 9 609 39 HOH HOH . I 5 HOH A 10 610 101 HOH HOH . I 5 HOH A 11 611 46 HOH HOH . I 5 HOH A 12 612 10 HOH HOH . I 5 HOH A 13 613 13 HOH HOH . I 5 HOH A 14 614 30 HOH HOH . I 5 HOH A 15 615 22 HOH HOH . I 5 HOH A 16 616 92 HOH HOH . I 5 HOH A 17 617 80 HOH HOH . I 5 HOH A 18 618 21 HOH HOH . I 5 HOH A 19 619 25 HOH HOH . I 5 HOH A 20 620 2 HOH HOH . I 5 HOH A 21 621 35 HOH HOH . I 5 HOH A 22 622 52 HOH HOH . I 5 HOH A 23 623 20 HOH HOH . I 5 HOH A 24 624 87 HOH HOH . I 5 HOH A 25 625 44 HOH HOH . I 5 HOH A 26 626 3 HOH HOH . I 5 HOH A 27 627 17 HOH HOH . I 5 HOH A 28 628 5 HOH HOH . I 5 HOH A 29 629 51 HOH HOH . I 5 HOH A 30 630 81 HOH HOH . I 5 HOH A 31 631 99 HOH HOH . I 5 HOH A 32 632 63 HOH HOH . I 5 HOH A 33 633 28 HOH HOH . I 5 HOH A 34 634 68 HOH HOH . I 5 HOH A 35 635 8 HOH HOH . I 5 HOH A 36 636 58 HOH HOH . I 5 HOH A 37 637 100 HOH HOH . I 5 HOH A 38 638 54 HOH HOH . I 5 HOH A 39 639 32 HOH HOH . I 5 HOH A 40 640 29 HOH HOH . I 5 HOH A 41 641 70 HOH HOH . I 5 HOH A 42 642 103 HOH HOH . I 5 HOH A 43 643 16 HOH HOH . I 5 HOH A 44 644 94 HOH HOH . I 5 HOH A 45 645 36 HOH HOH . I 5 HOH A 46 646 75 HOH HOH . I 5 HOH A 47 647 59 HOH HOH . I 5 HOH A 48 648 77 HOH HOH . I 5 HOH A 49 649 42 HOH HOH . I 5 HOH A 50 650 33 HOH HOH . I 5 HOH A 51 651 95 HOH HOH . I 5 HOH A 52 652 90 HOH HOH . I 5 HOH A 53 653 108 HOH HOH . I 5 HOH A 54 654 102 HOH HOH . I 5 HOH A 55 655 83 HOH HOH . I 5 HOH A 56 656 69 HOH HOH . I 5 HOH A 57 657 40 HOH HOH . I 5 HOH A 58 658 38 HOH HOH . I 5 HOH A 59 659 105 HOH HOH . I 5 HOH A 60 660 106 HOH HOH . I 5 HOH A 61 661 107 HOH HOH . J 5 HOH B 1 601 57 HOH HOH . J 5 HOH B 2 602 73 HOH HOH . J 5 HOH B 3 603 79 HOH HOH . J 5 HOH B 4 604 62 HOH HOH . J 5 HOH B 5 605 64 HOH HOH . J 5 HOH B 6 606 96 HOH HOH . J 5 HOH B 7 607 98 HOH HOH . J 5 HOH B 8 608 49 HOH HOH . J 5 HOH B 9 609 88 HOH HOH . J 5 HOH B 10 610 9 HOH HOH . J 5 HOH B 11 611 6 HOH HOH . J 5 HOH B 12 612 12 HOH HOH . J 5 HOH B 13 613 26 HOH HOH . J 5 HOH B 14 614 27 HOH HOH . J 5 HOH B 15 615 24 HOH HOH . J 5 HOH B 16 616 104 HOH HOH . J 5 HOH B 17 617 4 HOH HOH . J 5 HOH B 18 618 91 HOH HOH . J 5 HOH B 19 619 67 HOH HOH . J 5 HOH B 20 620 85 HOH HOH . J 5 HOH B 21 621 84 HOH HOH . J 5 HOH B 22 622 43 HOH HOH . J 5 HOH B 23 623 7 HOH HOH . J 5 HOH B 24 624 50 HOH HOH . J 5 HOH B 25 625 78 HOH HOH . J 5 HOH B 26 626 56 HOH HOH . J 5 HOH B 27 627 76 HOH HOH . J 5 HOH B 28 628 23 HOH HOH . J 5 HOH B 29 629 45 HOH HOH . J 5 HOH B 30 630 60 HOH HOH . J 5 HOH B 31 631 53 HOH HOH . J 5 HOH B 32 632 86 HOH HOH . J 5 HOH B 33 633 41 HOH HOH . J 5 HOH B 34 634 93 HOH HOH . J 5 HOH B 35 635 72 HOH HOH . J 5 HOH B 36 636 14 HOH HOH . J 5 HOH B 37 637 66 HOH HOH . J 5 HOH B 38 638 37 HOH HOH . J 5 HOH B 39 639 15 HOH HOH . J 5 HOH B 40 640 89 HOH HOH . J 5 HOH B 41 641 55 HOH HOH . J 5 HOH B 42 642 34 HOH HOH . J 5 HOH B 43 643 65 HOH HOH . J 5 HOH B 44 644 74 HOH HOH . K 5 HOH C 1 201 71 HOH HOH . L 5 HOH D 1 201 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 MRJ . . . H 4 43.831 -26.768 106.924 1 68.13 ? O23 MRJ 502 B 1 HETATM 2 P P24 MRJ . . . H 4 43.811 -28.278 106.805 1 68.33 ? P24 MRJ 502 B 1 HETATM 3 O O25 MRJ . . . H 4 42.94 -28.922 107.86 1 73.86 ? O25 MRJ 502 B 1 HETATM 4 O O27 MRJ . . . H 4 43.318 -28.735 105.334 1 69.39 ? O27 MRJ 502 B 1 HETATM 5 C C28 MRJ . . . H 4 43.157 -27.796 104.266 1 71.39 ? C28 MRJ 502 B 1 HETATM 6 C C29 MRJ . . . H 4 41.681 -27.597 103.964 1 72.74 ? C29 MRJ 502 B 1 HETATM 7 C C30 MRJ . . . H 4 41.516 -26.892 102.626 1 72.39 ? C30 MRJ 502 B 1 HETATM 8 C C31 MRJ . . . H 4 40.987 -28.95 103.909 1 70.88 ? C31 MRJ 502 B 1 HETATM 9 C C32 MRJ . . . H 4 41.063 -26.749 105.075 1 75.88 ? C32 MRJ 502 B 1 HETATM 10 O O33 MRJ . . . H 4 41.965 -25.707 105.46 1 74.26 ? O33 MRJ 502 B 1 HETATM 11 C C34 MRJ . . . H 4 39.788 -26.104 104.626 1 80.3 ? C34 MRJ 502 B 1 HETATM 12 O O35 MRJ . . . H 4 38.785 -26.768 104.436 1 81.68 ? O35 MRJ 502 B 1 HETATM 13 N N36 MRJ . . . H 4 39.791 -24.775 104.561 1 82.75 ? N36 MRJ 502 B 1 HETATM 14 C C37 MRJ . . . H 4 38.6 -24.06 104.152 1 85.07 ? C37 MRJ 502 B 1 HETATM 15 C C38 MRJ . . . H 4 38.527 -22.675 104.774 1 86.02 ? C38 MRJ 502 B 1 HETATM 16 C C39 MRJ . . . H 4 38.348 -21.655 103.677 1 85.92 ? C39 MRJ 502 B 1 HETATM 17 O O40 MRJ . . . H 4 37.969 -21.992 102.565 1 86.73 ? O40 MRJ 502 B 1 HETATM 18 N N41 MRJ . . . H 4 38.632 -20.403 104.024 1 83.51 ? N41 MRJ 502 B 1 HETATM 19 C C42 MRJ . . . H 4 38.533 -19.286 103.108 1 79.87 ? C42 MRJ 502 B 1 HETATM 20 C C43 MRJ . . . H 4 37.092 -18.929 102.751 1 76.7 ? C43 MRJ 502 B 1 HETATM 21 C C10 MRJ . . . H 4 38.795 -19.149 90.976 1 69.73 ? C10 MRJ 502 B 1 HETATM 22 C C11 MRJ . . . H 4 39.699 -20.364 91.09 1 66.99 ? C11 MRJ 502 B 1 HETATM 23 C C12 MRJ . . . H 4 40.31 -20.667 89.731 1 66.77 ? C12 MRJ 502 B 1 HETATM 24 C C13 MRJ . . . H 4 40.305 -22.167 89.483 1 67.63 ? C13 MRJ 502 B 1 HETATM 25 C C2 MRJ . . . H 4 37.216 -19.162 100.325 1 73.09 ? C2 MRJ 502 B 1 HETATM 26 C C3 MRJ . . . H 4 36.62 -19.759 99.076 1 66.86 ? C3 MRJ 502 B 1 HETATM 27 C C4 MRJ . . . H 4 37.741 -19.92 98.056 1 72.38 ? C4 MRJ 502 B 1 HETATM 28 C C5 MRJ . . . H 4 37.334 -19.354 96.705 1 76.11 ? C5 MRJ 502 B 1 HETATM 29 C C6 MRJ . . . H 4 38.496 -19.296 95.72 1 75.63 ? C6 MRJ 502 B 1 HETATM 30 C C7 MRJ . . . H 4 38.182 -18.256 94.651 1 74.56 ? C7 MRJ 502 B 1 HETATM 31 C C8 MRJ . . . H 4 38.986 -18.488 93.385 1 72.93 ? C8 MRJ 502 B 1 HETATM 32 C C9 MRJ . . . H 4 38.039 -18.908 92.274 1 70.34 ? C9 MRJ 502 B 1 HETATM 33 N N1 MRJ . . . H 4 36.648 -19.494 101.485 1 75.27 ? N1 MRJ 502 B 1 HETATM 34 O O14 MRJ . . . H 4 38.112 -18.343 100.217 1 74.39 ? O14 MRJ 502 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #