data_6OL9 # _model_server_result.job_id eFnubeUxado9bd5Gv4ab2w _model_server_result.datetime_utc '2025-07-30 19:02:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ol9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 6OL9 # _exptl.entry_id 6OL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.512 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.11 _cell.angle_gamma 90 _cell.entry_id 6OL9 _cell.length_a 97.06 _cell.length_b 63.31 _cell.length_c 91.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 103 1_555 A SG CYS 165 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 404 A CYS 468 1_555 A SG CYS 407 A CYS 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C19 H22 N O4 S2 1' _chem_comp.formula_weight 392.512 _chem_comp.id 0HK _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Tiotropium # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S44 C43 0HK sing 1 n y S44 C32 0HK sing 2 n y C43 C42 0HK doub 3 n y C6 C7 0HK sing 4 n n C6 C5 0HK sing 5 n n O29 C28 0HK doub 6 n n C7 C8 0HK sing 7 n n C7 N2 0HK sing 8 n n C42 C41 0HK sing 9 n y C32 C41 0HK doub 10 n y C32 C30 0HK sing 11 n n O33 C30 0HK sing 12 n n C8 O10 0HK sing 13 n n C8 C9 0HK sing 14 n n C28 C30 0HK sing 15 n n C28 O11 0HK sing 16 n n C30 C31 0HK sing 17 n n C12 N2 0HK sing 18 n n C1 N2 0HK sing 19 n n N2 C3 0HK sing 20 n n O10 C9 0HK sing 21 n n C5 O11 0HK sing 22 n n C5 C4 0HK sing 23 n n C9 C3 0HK sing 24 n n C3 C4 0HK sing 25 n n C31 S37 0HK sing 26 n y C31 C34 0HK doub 27 n y S37 C36 0HK sing 28 n y C34 C35 0HK sing 29 n y C35 C36 0HK doub 30 n y C34 H1 0HK sing 31 n n C35 H2 0HK sing 32 n n C36 H3 0HK sing 33 n n C41 H4 0HK sing 34 n n C42 H5 0HK sing 35 n n C43 H6 0HK sing 36 n n O33 H7 0HK sing 37 n n C1 H8 0HK sing 38 n n C1 H9 0HK sing 39 n n C1 H10 0HK sing 40 n n C3 H11 0HK sing 41 n n C4 H12 0HK sing 42 n n C4 H13 0HK sing 43 n n C5 H14 0HK sing 44 n n C6 H15 0HK sing 45 n n C6 H16 0HK sing 46 n n C7 H17 0HK sing 47 n n C8 H18 0HK sing 48 n n C9 H19 0HK sing 49 n n C12 H20 0HK sing 50 n n C12 H21 0HK sing 51 n n C12 H22 0HK sing 52 n n # _atom_sites.entry_id 6OL9 _atom_sites.fract_transf_matrix[1][1] 0.010303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00221 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 1201 2 OLA OLA . C 2 OLA A 1 1202 3 OLA OLA . D 3 0HK A 1 1203 1201 0HK 0HK . E 4 P33 A 1 1204 1 P33 P33 . F 5 OLC A 1 1205 1 OLC OLC . G 6 HOH A 1 1301 8 HOH HOH . G 6 HOH A 2 1302 1 HOH HOH . G 6 HOH A 3 1303 6 HOH HOH . G 6 HOH A 4 1304 2 HOH HOH . G 6 HOH A 5 1305 13 HOH HOH . G 6 HOH A 6 1306 12 HOH HOH . G 6 HOH A 7 1307 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 0HK . . . D 3 36.42 25.486 -41.497 1 56.58 ? C28 0HK 1203 A 1 HETATM 2 O O29 0HK . . . D 3 36.257 26.5 -42.114 1 56.97 ? O29 0HK 1203 A 1 HETATM 3 C C31 0HK . . . D 3 38.221 24.573 -39.917 1 65.21 ? C31 0HK 1203 A 1 HETATM 4 C C32 0HK . . . D 3 37.617 23.355 -42.023 1 58.31 ? C32 0HK 1203 A 1 HETATM 5 C C34 0HK . . . D 3 37.546 24.127 -38.773 1 49.04 ? C34 0HK 1203 A 1 HETATM 6 C C35 0HK . . . D 3 38.364 24.104 -37.632 1 57.73 ? C35 0HK 1203 A 1 HETATM 7 C C36 0HK . . . D 3 39.615 24.517 -37.897 1 70.66 ? C36 0HK 1203 A 1 HETATM 8 C C41 0HK . . . D 3 37.288 22.119 -41.468 1 37.65 ? C41 0HK 1203 A 1 HETATM 9 C C42 0HK . . . D 3 37.244 21.085 -42.44 1 51.01 ? C42 0HK 1203 A 1 HETATM 10 C C43 0HK . . . D 3 37.532 21.527 -43.682 1 60.94 ? C43 0HK 1203 A 1 HETATM 11 O O10 0HK . . . D 3 33.169 21.366 -41.48 1 61.96 ? O10 0HK 1203 A 1 HETATM 12 O O11 0HK . . . D 3 35.471 24.833 -40.82 1 58.3 ? O11 0HK 1203 A 1 HETATM 13 O O33 0HK . . . D 3 38.744 25.461 -42.089 1 51.36 ? O33 0HK 1203 A 1 HETATM 14 S S37 0HK . . . D 3 39.846 24.948 -39.52 1 75.99 ? S37 0HK 1203 A 1 HETATM 15 S S44 0HK . . . D 3 37.866 23.204 -43.723 1 71.91 ? S44 0HK 1203 A 1 HETATM 16 C C1 0HK . . . D 3 30.694 24.802 -40.971 1 55.05 ? C1 0HK 1203 A 1 HETATM 17 C C3 0HK . . . D 3 32.58 23.365 -39.987 1 58.1 ? C3 0HK 1203 A 1 HETATM 18 C C4 0HK . . . D 3 33.343 24.671 -39.671 1 57.95 ? C4 0HK 1203 A 1 HETATM 19 C C5 0HK . . . D 3 34.088 25.314 -40.84 1 60.44 ? C5 0HK 1203 A 1 HETATM 20 C C6 0HK . . . D 3 33.412 25.057 -42.185 1 60.1 ? C6 0HK 1203 A 1 HETATM 21 C C7 0HK . . . D 3 32.645 23.727 -42.312 1 58.23 ? C7 0HK 1203 A 1 HETATM 22 C C8 0HK . . . D 3 33.656 22.621 -42.001 1 60.73 ? C8 0HK 1203 A 1 HETATM 23 C C9 0HK . . . D 3 33.61 22.391 -40.563 1 61.01 ? C9 0HK 1203 A 1 HETATM 24 C C12 0HK . . . D 3 30.5 22.63 -41.356 1 40.48 ? C12 0HK 1203 A 1 HETATM 25 C C30 0HK . . . D 3 37.763 24.731 -41.372 1 59.33 ? C30 0HK 1203 A 1 HETATM 26 N N2 0HK . . . D 3 31.622 23.624 -41.16 1 56.65 ? N2 0HK 1203 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 709 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #