data_6OLT # _model_server_result.job_id ZEUE1OcKPhUfUT_Xmueqog _model_server_result.datetime_utc '2025-03-06 00:46:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6olt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6OLT # _exptl.entry_id 6OLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.6 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(dodecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OLT _cell.length_a 86.45 _cell.length_b 86.45 _cell.length_c 115.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -57.58 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 164 A CYS 163 1_555 C C3 MRJ . A MRJ 501 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.853 ? covale ? covale2 A SG CYS 164 A CYS 163 1_555 C C3 MRJ . A MRJ 501 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.847 ? covale ? covale3 C P24 MRJ . A MRJ 501 1_555 B OG SER 37 B SER 36 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale4 C P24 MRJ . A MRJ 501 1_555 B OG SER 37 B SER 36 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.609 ? # _chem_comp.formula 'C23 H46 N3 O8 P' _chem_comp.formula_weight 523.6 _chem_comp.id MRJ _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(dodecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 MRJ sing 237 n n C11 C12 MRJ sing 238 n n C10 C9 MRJ sing 239 n n C13 C12 MRJ sing 240 n n C9 C8 MRJ sing 241 n n C8 C7 MRJ sing 242 n n C7 C6 MRJ sing 243 n n C6 C5 MRJ sing 244 n n C5 C4 MRJ sing 245 n n C4 C3 MRJ sing 246 n n C3 C2 MRJ sing 247 n n O14 C2 MRJ doub 248 n n C2 N1 MRJ sing 249 n n N1 C43 MRJ sing 250 n n C43 C42 MRJ sing 251 n n C42 N41 MRJ sing 252 n n N41 C39 MRJ sing 253 n n C39 C38 MRJ sing 254 n n C39 O40 MRJ doub 255 n n C38 C37 MRJ sing 256 n n C30 C29 MRJ sing 257 n n C37 N36 MRJ sing 258 n n N36 C34 MRJ sing 259 n n C29 C31 MRJ sing 260 n n C29 C28 MRJ sing 261 n n C29 C32 MRJ sing 262 n n C28 O27 MRJ sing 263 n n C34 C32 MRJ sing 264 n n C34 O35 MRJ doub 265 n n O33 C32 MRJ sing 266 n n O27 P24 MRJ sing 267 n n O23 P24 MRJ sing 268 n n P24 O25 MRJ sing 269 n n O23 H1 MRJ sing 270 n n O25 H2 MRJ sing 271 n n C28 H3 MRJ sing 272 n n C28 H4 MRJ sing 273 n n C30 H5 MRJ sing 274 n n C30 H6 MRJ sing 275 n n C30 H7 MRJ sing 276 n n C31 H8 MRJ sing 277 n n C31 H9 MRJ sing 278 n n C31 H10 MRJ sing 279 n n C32 H11 MRJ sing 280 n n O33 H12 MRJ sing 281 n n N36 H13 MRJ sing 282 n n C37 H14 MRJ sing 283 n n C37 H15 MRJ sing 284 n n C38 H16 MRJ sing 285 n n C38 H17 MRJ sing 286 n n N41 H18 MRJ sing 287 n n C42 H19 MRJ sing 288 n n C42 H20 MRJ sing 289 n n C43 H21 MRJ sing 290 n n C43 H22 MRJ sing 291 n n C10 H23 MRJ sing 292 n n C10 H24 MRJ sing 293 n n C11 H25 MRJ sing 294 n n C11 H26 MRJ sing 295 n n C12 H27 MRJ sing 296 n n C12 H28 MRJ sing 297 n n C13 H29 MRJ sing 298 n n C13 H30 MRJ sing 299 n n C13 H31 MRJ sing 300 n n C3 H32 MRJ sing 301 n n C3 H33 MRJ sing 302 n n C4 H34 MRJ sing 303 n n C4 H35 MRJ sing 304 n n C5 H36 MRJ sing 305 n n C5 H37 MRJ sing 306 n n C6 H38 MRJ sing 307 n n C6 H39 MRJ sing 308 n n C7 H40 MRJ sing 309 n n C7 H41 MRJ sing 310 n n C8 H42 MRJ sing 311 n n C8 H43 MRJ sing 312 n n C9 H44 MRJ sing 313 n n C9 H45 MRJ sing 314 n n N1 H46 MRJ sing 315 n n P24 O1 MRJ doub 316 n n # _atom_sites.entry_id 6OLT _atom_sites.fract_transf_matrix[1][1] 0.011567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MRJ A 1 501 1 MRJ PNS . D 4 HOH A 1 601 35 HOH HOH . D 4 HOH A 2 602 87 HOH HOH . D 4 HOH A 3 603 58 HOH HOH . D 4 HOH A 4 604 11 HOH HOH . D 4 HOH A 5 605 36 HOH HOH . D 4 HOH A 6 606 15 HOH HOH . D 4 HOH A 7 607 32 HOH HOH . D 4 HOH A 8 608 73 HOH HOH . D 4 HOH A 9 609 92 HOH HOH . D 4 HOH A 10 610 5 HOH HOH . D 4 HOH A 11 611 91 HOH HOH . D 4 HOH A 12 612 57 HOH HOH . D 4 HOH A 13 613 48 HOH HOH . D 4 HOH A 14 614 6 HOH HOH . D 4 HOH A 15 615 16 HOH HOH . D 4 HOH A 16 616 25 HOH HOH . D 4 HOH A 17 617 3 HOH HOH . D 4 HOH A 18 618 82 HOH HOH . D 4 HOH A 19 619 26 HOH HOH . D 4 HOH A 20 620 80 HOH HOH . D 4 HOH A 21 621 12 HOH HOH . D 4 HOH A 22 622 13 HOH HOH . D 4 HOH A 23 623 42 HOH HOH . D 4 HOH A 24 624 64 HOH HOH . D 4 HOH A 25 625 4 HOH HOH . D 4 HOH A 26 626 31 HOH HOH . D 4 HOH A 27 627 75 HOH HOH . D 4 HOH A 28 628 21 HOH HOH . D 4 HOH A 29 629 56 HOH HOH . D 4 HOH A 30 630 18 HOH HOH . D 4 HOH A 31 631 24 HOH HOH . D 4 HOH A 32 632 59 HOH HOH . D 4 HOH A 33 633 40 HOH HOH . D 4 HOH A 34 634 7 HOH HOH . D 4 HOH A 35 635 47 HOH HOH . D 4 HOH A 36 636 27 HOH HOH . D 4 HOH A 37 637 19 HOH HOH . D 4 HOH A 38 638 9 HOH HOH . D 4 HOH A 39 639 10 HOH HOH . D 4 HOH A 40 640 49 HOH HOH . D 4 HOH A 41 641 8 HOH HOH . D 4 HOH A 42 642 39 HOH HOH . D 4 HOH A 43 643 53 HOH HOH . D 4 HOH A 44 644 14 HOH HOH . D 4 HOH A 45 645 2 HOH HOH . D 4 HOH A 46 646 85 HOH HOH . D 4 HOH A 47 647 72 HOH HOH . D 4 HOH A 48 648 55 HOH HOH . D 4 HOH A 49 649 17 HOH HOH . D 4 HOH A 50 650 88 HOH HOH . D 4 HOH A 51 651 62 HOH HOH . D 4 HOH A 52 652 1 HOH HOH . D 4 HOH A 53 653 34 HOH HOH . D 4 HOH A 54 654 45 HOH HOH . D 4 HOH A 55 655 43 HOH HOH . D 4 HOH A 56 656 20 HOH HOH . D 4 HOH A 57 657 52 HOH HOH . D 4 HOH A 58 658 29 HOH HOH . D 4 HOH A 59 659 67 HOH HOH . D 4 HOH A 60 660 23 HOH HOH . D 4 HOH A 61 661 30 HOH HOH . D 4 HOH A 62 662 46 HOH HOH . D 4 HOH A 63 663 54 HOH HOH . D 4 HOH A 64 664 44 HOH HOH . D 4 HOH A 65 665 33 HOH HOH . D 4 HOH A 66 666 71 HOH HOH . D 4 HOH A 67 667 50 HOH HOH . D 4 HOH A 68 668 60 HOH HOH . D 4 HOH A 69 669 89 HOH HOH . D 4 HOH A 70 670 22 HOH HOH . D 4 HOH A 71 671 81 HOH HOH . D 4 HOH A 72 672 41 HOH HOH . D 4 HOH A 73 673 65 HOH HOH . D 4 HOH A 74 674 68 HOH HOH . D 4 HOH A 75 675 77 HOH HOH . D 4 HOH A 76 676 38 HOH HOH . D 4 HOH A 77 677 66 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 90 HOH HOH . D 4 HOH A 80 680 86 HOH HOH . D 4 HOH A 81 681 63 HOH HOH . D 4 HOH A 82 682 61 HOH HOH . D 4 HOH A 83 683 84 HOH HOH . D 4 HOH A 84 684 70 HOH HOH . D 4 HOH A 85 685 74 HOH HOH . D 4 HOH A 86 686 51 HOH HOH . D 4 HOH A 87 687 76 HOH HOH . D 4 HOH A 88 688 28 HOH HOH . E 4 HOH B 1 201 83 HOH HOH . E 4 HOH B 2 202 37 HOH HOH . E 4 HOH B 3 203 69 HOH HOH . E 4 HOH B 4 204 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 MRJ . A . C 3 -20.357 -13.755 -37.822 0.48 65.27 ? O23 MRJ 501 A 1 HETATM 2 O O23 MRJ . B . C 3 -20.55 -13.762 -37.838 0.44 65.17 ? O23 MRJ 501 A 1 HETATM 3 P P24 MRJ . A . C 3 -20.488 -12.32 -37.37 0.48 63.79 ? P24 MRJ 501 A 1 HETATM 4 P P24 MRJ . B . C 3 -20.507 -12.326 -37.373 0.44 63.78 ? P24 MRJ 501 A 1 HETATM 5 O O25 MRJ . A . C 3 -21.711 -12.115 -36.508 0.48 64.46 ? O25 MRJ 501 A 1 HETATM 6 O O25 MRJ . B . C 3 -21.675 -12.006 -36.471 0.44 64.39 ? O25 MRJ 501 A 1 HETATM 7 O O27 MRJ . A . C 3 -19.168 -11.849 -36.58 0.48 63.25 ? O27 MRJ 501 A 1 HETATM 8 O O27 MRJ . B . C 3 -19.109 -12.028 -36.624 0.44 63.31 ? O27 MRJ 501 A 1 HETATM 9 C C28 MRJ . A . C 3 -19.162 -10.64 -35.824 0.48 63.06 ? C28 MRJ 501 A 1 HETATM 10 C C28 MRJ . B . C 3 -18.875 -10.811 -35.914 0.44 63.19 ? C28 MRJ 501 A 1 HETATM 11 C C29 MRJ . A . C 3 -18.857 -10.975 -34.373 0.48 65.2 ? C29 MRJ 501 A 1 HETATM 12 C C29 MRJ . B . C 3 -18.692 -11.092 -34.427 0.44 65.21 ? C29 MRJ 501 A 1 HETATM 13 C C30 MRJ . A . C 3 -18.394 -9.708 -33.666 0.48 64.72 ? C30 MRJ 501 A 1 HETATM 14 C C30 MRJ . B . C 3 -18.335 -9.792 -33.719 0.44 64.74 ? C30 MRJ 501 A 1 HETATM 15 C C31 MRJ . A . C 3 -20.111 -11.543 -33.721 0.48 67.3 ? C31 MRJ 501 A 1 HETATM 16 C C31 MRJ . B . C 3 -19.995 -11.66 -33.878 0.44 67.2 ? C31 MRJ 501 A 1 HETATM 17 C C32 MRJ . A . C 3 -17.734 -12.014 -34.412 0.48 65.9 ? C32 MRJ 501 A 1 HETATM 18 C C32 MRJ . B . C 3 -17.541 -12.094 -34.271 0.44 65.72 ? C32 MRJ 501 A 1 HETATM 19 O O33 MRJ . A . C 3 -16.642 -11.457 -35.156 0.48 66.72 ? O33 MRJ 501 A 1 HETATM 20 O O33 MRJ . B . C 3 -16.401 -11.566 -34.962 0.44 66.56 ? O33 MRJ 501 A 1 HETATM 21 C C34 MRJ . A . C 3 -17.208 -12.485 -33.078 0.48 65.83 ? C34 MRJ 501 A 1 HETATM 22 C C34 MRJ . B . C 3 -17.145 -12.386 -32.842 0.44 65.92 ? C34 MRJ 501 A 1 HETATM 23 O O35 MRJ . A . C 3 -17.663 -12.137 -31.999 0.48 66.62 ? O35 MRJ 501 A 1 HETATM 24 O O35 MRJ . B . C 3 -17.897 -12.243 -31.89 0.44 67.09 ? O35 MRJ 501 A 1 HETATM 25 N N36 MRJ . A . C 3 -16.227 -13.377 -33.174 0.48 64.43 ? N36 MRJ 501 A 1 HETATM 26 N N36 MRJ . B . C 3 -15.941 -12.915 -32.658 0.44 64.1 ? N36 MRJ 501 A 1 HETATM 27 C C37 MRJ . A . C 3 -15.575 -13.928 -32.006 0.48 62 ? C37 MRJ 501 A 1 HETATM 28 C C37 MRJ . B . C 3 -15.533 -13.243 -31.307 0.44 61.59 ? C37 MRJ 501 A 1 HETATM 29 C C38 MRJ . A . C 3 -14.206 -13.299 -31.791 0.48 61.03 ? C38 MRJ 501 A 1 HETATM 30 C C38 MRJ . B . C 3 -14.135 -13.834 -31.207 0.44 59.93 ? C38 MRJ 501 A 1 HETATM 31 C C39 MRJ . A . C 3 -13.657 -13.7 -30.444 0.48 58.99 ? C39 MRJ 501 A 1 HETATM 32 C C39 MRJ . B . C 3 -13.259 -12.821 -30.514 0.44 58.61 ? C39 MRJ 501 A 1 HETATM 33 O O40 MRJ . A . C 3 -14.339 -14.33 -29.653 0.48 58.56 ? O40 MRJ 501 A 1 HETATM 34 O O40 MRJ . B . C 3 -12.206 -13.166 -30.005 0.44 56.35 ? O40 MRJ 501 A 1 HETATM 35 N N41 MRJ . A . C 3 -12.41 -13.319 -30.185 0.48 57.21 ? N41 MRJ 501 A 1 HETATM 36 N N41 MRJ . B . C 3 -13.725 -11.572 -30.513 0.44 56.69 ? N41 MRJ 501 A 1 HETATM 37 C C42 MRJ . A . C 3 -11.774 -13.634 -28.923 0.48 52.65 ? C42 MRJ 501 A 1 HETATM 38 C C42 MRJ . B . C 3 -13.014 -10.439 -29.953 0.44 50.91 ? C42 MRJ 501 A 1 HETATM 39 C C43 MRJ . A . C 3 -10.259 -13.499 -29 0.48 44.2 ? C43 MRJ 501 A 1 HETATM 40 C C43 MRJ . B . C 3 -12.75 -10.513 -28.454 0.44 45.43 ? C43 MRJ 501 A 1 HETATM 41 C C2 MRJ . A . C 3 -9.838 -11.376 -27.903 0.48 41.23 ? C2 MRJ 501 A 1 HETATM 42 C C2 MRJ . B . C 3 -10.33 -10.681 -28.291 0.44 40.75 ? C2 MRJ 501 A 1 HETATM 43 C C3 MRJ . A . C 3 -9.279 -9.977 -27.999 0.48 38.64 ? C3 MRJ 501 A 1 HETATM 44 C C3 MRJ . B . C 3 -9.037 -9.934 -28.088 0.44 38.32 ? C3 MRJ 501 A 1 HETATM 45 N N1 MRJ . A . C 3 -9.791 -12.126 -29.001 0.48 41.96 ? N1 MRJ 501 A 1 HETATM 46 N N1 MRJ . B . C 3 -11.44 -9.954 -28.191 0.44 40.63 ? N1 MRJ 501 A 1 HETATM 47 O O14 MRJ . A . C 3 -10.273 -11.785 -26.84 0.48 39.62 ? O14 MRJ 501 A 1 HETATM 48 O O14 MRJ . B . C 3 -10.328 -11.888 -28.454 0.44 43.19 ? O14 MRJ 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #