data_6OM5
#
_model_server_result.job_id            HaKYQXjypYoMGZeqD-0xIw 
_model_server_result.datetime_utc      '2024-12-17 12:25:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6om5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":309}' 
#
_entry.id    6OM5 
#
_exptl.entry_id    6OM5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6OM5 
_cell.length_a            91.043 
_cell.length_b            91.043 
_cell.length_c            97.484 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NE2 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             101 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              119 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.03 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     6OM5 
_atom_sites.fract_transf_matrix[1][1]    0.010984 
_atom_sites.fract_transf_matrix[1][2]    0.006342 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010258 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 301 1 HEM HEM . 
C 3 SO4 A 1 302 3 SO4 SO4 . 
D 3 SO4 A 1 303 4 SO4 SO4 . 
E 3 SO4 A 1 304 5 SO4 SO4 . 
F 4 CL A 1 305 1 CL CL . 
G 4 CL A 1 306 2 CL CL . 
H 5 GOL A 1 307 1 GOL GOL . 
I 5 GOL A 1 308 2 GOL GOL . 
J 5 GOL A 1 309 3 GOL GOL . 
K 5 GOL A 1 310 4 GOL GOL . 
L 6 HOH A 1 401 144 HOH HOH . 
L 6 HOH A 2 402 61 HOH HOH . 
L 6 HOH A 3 403 162 HOH HOH . 
L 6 HOH A 4 404 110 HOH HOH . 
L 6 HOH A 5 405 97 HOH HOH . 
L 6 HOH A 6 406 120 HOH HOH . 
L 6 HOH A 7 407 198 HOH HOH . 
L 6 HOH A 8 408 164 HOH HOH . 
L 6 HOH A 9 409 117 HOH HOH . 
L 6 HOH A 10 410 171 HOH HOH . 
L 6 HOH A 11 411 60 HOH HOH . 
L 6 HOH A 12 412 165 HOH HOH . 
L 6 HOH A 13 413 151 HOH HOH . 
L 6 HOH A 14 414 49 HOH HOH . 
L 6 HOH A 15 415 82 HOH HOH . 
L 6 HOH A 16 416 192 HOH HOH . 
L 6 HOH A 17 417 98 HOH HOH . 
L 6 HOH A 18 418 122 HOH HOH . 
L 6 HOH A 19 419 123 HOH HOH . 
L 6 HOH A 20 420 107 HOH HOH . 
L 6 HOH A 21 421 84 HOH HOH . 
L 6 HOH A 22 422 80 HOH HOH . 
L 6 HOH A 23 423 132 HOH HOH . 
L 6 HOH A 24 424 118 HOH HOH . 
L 6 HOH A 25 425 95 HOH HOH . 
L 6 HOH A 26 426 47 HOH HOH . 
L 6 HOH A 27 427 41 HOH HOH . 
L 6 HOH A 28 428 8 HOH HOH . 
L 6 HOH A 29 429 168 HOH HOH . 
L 6 HOH A 30 430 113 HOH HOH . 
L 6 HOH A 31 431 181 HOH HOH . 
L 6 HOH A 32 432 23 HOH HOH . 
L 6 HOH A 33 433 154 HOH HOH . 
L 6 HOH A 34 434 4 HOH HOH . 
L 6 HOH A 35 435 58 HOH HOH . 
L 6 HOH A 36 436 197 HOH HOH . 
L 6 HOH A 37 437 44 HOH HOH . 
L 6 HOH A 38 438 106 HOH HOH . 
L 6 HOH A 39 439 134 HOH HOH . 
L 6 HOH A 40 440 7 HOH HOH . 
L 6 HOH A 41 441 194 HOH HOH . 
L 6 HOH A 42 442 193 HOH HOH . 
L 6 HOH A 43 443 35 HOH HOH . 
L 6 HOH A 44 444 196 HOH HOH . 
L 6 HOH A 45 445 42 HOH HOH . 
L 6 HOH A 46 446 78 HOH HOH . 
L 6 HOH A 47 447 65 HOH HOH . 
L 6 HOH A 48 448 3 HOH HOH . 
L 6 HOH A 49 449 70 HOH HOH . 
L 6 HOH A 50 450 12 HOH HOH . 
L 6 HOH A 51 451 55 HOH HOH . 
L 6 HOH A 52 452 103 HOH HOH . 
L 6 HOH A 53 453 199 HOH HOH . 
L 6 HOH A 54 454 121 HOH HOH . 
L 6 HOH A 55 455 19 HOH HOH . 
L 6 HOH A 56 456 5 HOH HOH . 
L 6 HOH A 57 457 81 HOH HOH . 
L 6 HOH A 58 458 190 HOH HOH . 
L 6 HOH A 59 459 115 HOH HOH . 
L 6 HOH A 60 460 187 HOH HOH . 
L 6 HOH A 61 461 24 HOH HOH . 
L 6 HOH A 62 462 101 HOH HOH . 
L 6 HOH A 63 463 1 HOH HOH . 
L 6 HOH A 64 464 9 HOH HOH . 
L 6 HOH A 65 465 40 HOH HOH . 
L 6 HOH A 66 466 28 HOH HOH . 
L 6 HOH A 67 467 14 HOH HOH . 
L 6 HOH A 68 468 169 HOH HOH . 
L 6 HOH A 69 469 138 HOH HOH . 
L 6 HOH A 70 470 159 HOH HOH . 
L 6 HOH A 71 471 37 HOH HOH . 
L 6 HOH A 72 472 57 HOH HOH . 
L 6 HOH A 73 473 128 HOH HOH . 
L 6 HOH A 74 474 52 HOH HOH . 
L 6 HOH A 75 475 158 HOH HOH . 
L 6 HOH A 76 476 32 HOH HOH . 
L 6 HOH A 77 477 2 HOH HOH . 
L 6 HOH A 78 478 39 HOH HOH . 
L 6 HOH A 79 479 86 HOH HOH . 
L 6 HOH A 80 480 180 HOH HOH . 
L 6 HOH A 81 481 34 HOH HOH . 
L 6 HOH A 82 482 88 HOH HOH . 
L 6 HOH A 83 483 36 HOH HOH . 
L 6 HOH A 84 484 112 HOH HOH . 
L 6 HOH A 85 485 50 HOH HOH . 
L 6 HOH A 86 486 25 HOH HOH . 
L 6 HOH A 87 487 11 HOH HOH . 
L 6 HOH A 88 488 68 HOH HOH . 
L 6 HOH A 89 489 71 HOH HOH . 
L 6 HOH A 90 490 6 HOH HOH . 
L 6 HOH A 91 491 91 HOH HOH . 
L 6 HOH A 92 492 111 HOH HOH . 
L 6 HOH A 93 493 176 HOH HOH . 
L 6 HOH A 94 494 76 HOH HOH . 
L 6 HOH A 95 495 72 HOH HOH . 
L 6 HOH A 96 496 96 HOH HOH . 
L 6 HOH A 97 497 170 HOH HOH . 
L 6 HOH A 98 498 21 HOH HOH . 
L 6 HOH A 99 499 85 HOH HOH . 
L 6 HOH A 100 500 13 HOH HOH . 
L 6 HOH A 101 501 153 HOH HOH . 
L 6 HOH A 102 502 160 HOH HOH . 
L 6 HOH A 103 503 10 HOH HOH . 
L 6 HOH A 104 504 69 HOH HOH . 
L 6 HOH A 105 505 94 HOH HOH . 
L 6 HOH A 106 506 43 HOH HOH . 
L 6 HOH A 107 507 149 HOH HOH . 
L 6 HOH A 108 508 87 HOH HOH . 
L 6 HOH A 109 509 53 HOH HOH . 
L 6 HOH A 110 510 16 HOH HOH . 
L 6 HOH A 111 511 182 HOH HOH . 
L 6 HOH A 112 512 31 HOH HOH . 
L 6 HOH A 113 513 63 HOH HOH . 
L 6 HOH A 114 514 104 HOH HOH . 
L 6 HOH A 115 515 59 HOH HOH . 
L 6 HOH A 116 516 109 HOH HOH . 
L 6 HOH A 117 517 90 HOH HOH . 
L 6 HOH A 118 518 29 HOH HOH . 
L 6 HOH A 119 519 45 HOH HOH . 
L 6 HOH A 120 520 27 HOH HOH . 
L 6 HOH A 121 521 77 HOH HOH . 
L 6 HOH A 122 522 156 HOH HOH . 
L 6 HOH A 123 523 62 HOH HOH . 
L 6 HOH A 124 524 148 HOH HOH . 
L 6 HOH A 125 525 33 HOH HOH . 
L 6 HOH A 126 526 30 HOH HOH . 
L 6 HOH A 127 527 46 HOH HOH . 
L 6 HOH A 128 528 100 HOH HOH . 
L 6 HOH A 129 529 188 HOH HOH . 
L 6 HOH A 130 530 175 HOH HOH . 
L 6 HOH A 131 531 83 HOH HOH . 
L 6 HOH A 132 532 102 HOH HOH . 
L 6 HOH A 133 533 51 HOH HOH . 
L 6 HOH A 134 534 108 HOH HOH . 
L 6 HOH A 135 535 79 HOH HOH . 
L 6 HOH A 136 536 186 HOH HOH . 
L 6 HOH A 137 537 172 HOH HOH . 
L 6 HOH A 138 538 75 HOH HOH . 
L 6 HOH A 139 539 26 HOH HOH . 
L 6 HOH A 140 540 167 HOH HOH . 
L 6 HOH A 141 541 73 HOH HOH . 
L 6 HOH A 142 542 119 HOH HOH . 
L 6 HOH A 143 543 48 HOH HOH . 
L 6 HOH A 144 544 22 HOH HOH . 
L 6 HOH A 145 545 74 HOH HOH . 
L 6 HOH A 146 546 126 HOH HOH . 
L 6 HOH A 147 547 150 HOH HOH . 
L 6 HOH A 148 548 166 HOH HOH . 
L 6 HOH A 149 549 130 HOH HOH . 
L 6 HOH A 150 550 161 HOH HOH . 
L 6 HOH A 151 551 131 HOH HOH . 
L 6 HOH A 152 552 178 HOH HOH . 
L 6 HOH A 153 553 92 HOH HOH . 
L 6 HOH A 154 554 114 HOH HOH . 
L 6 HOH A 155 555 140 HOH HOH . 
L 6 HOH A 156 556 105 HOH HOH . 
L 6 HOH A 157 557 189 HOH HOH . 
L 6 HOH A 158 558 15 HOH HOH . 
L 6 HOH A 159 559 136 HOH HOH . 
L 6 HOH A 160 560 146 HOH HOH . 
L 6 HOH A 161 561 89 HOH HOH . 
L 6 HOH A 162 562 163 HOH HOH . 
L 6 HOH A 163 563 143 HOH HOH . 
L 6 HOH A 164 564 20 HOH HOH . 
L 6 HOH A 165 565 17 HOH HOH . 
L 6 HOH A 166 566 125 HOH HOH . 
L 6 HOH A 167 567 124 HOH HOH . 
L 6 HOH A 168 568 38 HOH HOH . 
L 6 HOH A 169 569 139 HOH HOH . 
L 6 HOH A 170 570 185 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 5 45.704 47.01 -7.166 1 57.43 ? C1 GOL 309 A 1 
HETATM 2 O O1 GOL . . . J 5 44.887 48.177 -7.257 1 47.98 ? O1 GOL 309 A 1 
HETATM 3 C C2 GOL . . . J 5 46.021 46.402 -8.517 1 57.85 ? C2 GOL 309 A 1 
HETATM 4 O O2 GOL . . . J 5 47.412 46.104 -8.571 1 61.79 ? O2 GOL 309 A 1 
HETATM 5 C C3 GOL . . . J 5 45.242 45.143 -8.827 1 58.74 ? C3 GOL 309 A 1 
HETATM 6 O O3 GOL . . . J 5 46.111 44.022 -8.962 1 61.51 ? O3 GOL 309 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#