data_6OMK
#
_model_server_result.job_id            BhPNc3LSUDw9WtByFi1kkw 
_model_server_result.datetime_utc      '2024-12-27 07:48:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6omk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    6OMK 
#
_exptl.entry_id    6OMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OMK 
_cell.length_a            49.25 
_cell.length_b            89.17 
_cell.length_c            90.36 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 4 A HIS 1 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc2 A ND1 HIS 6 A HIS 3 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc3 A ND1 HIS 73 A HIS 70 1_555 C ZN ZN . A ZN 502 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc4 A OE2 GLU 97 A GLU 94 1_555 C ZN ZN . A ZN 502 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6OMK 
_atom_sites.fract_transf_matrix[1][1]    0.020305 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MYA A 1 501 501 MYA MYA . 
C 3 ZN A 1 502 601 ZN ZN . 
D 4 EDO A 1 503 701 EDO EDO . 
E 4 EDO A 1 504 801 EDO EDO . 
F 4 EDO A 1 505 901 EDO EDO . 
G 5 HOH A 1 601 132 HOH HOH . 
G 5 HOH A 2 602 24 HOH HOH . 
G 5 HOH A 3 603 138 HOH HOH . 
G 5 HOH A 4 604 140 HOH HOH . 
G 5 HOH A 5 605 16 HOH HOH . 
G 5 HOH A 6 606 189 HOH HOH . 
G 5 HOH A 7 607 171 HOH HOH . 
G 5 HOH A 8 608 119 HOH HOH . 
G 5 HOH A 9 609 88 HOH HOH . 
G 5 HOH A 10 610 48 HOH HOH . 
G 5 HOH A 11 611 172 HOH HOH . 
G 5 HOH A 12 612 214 HOH HOH . 
G 5 HOH A 13 613 149 HOH HOH . 
G 5 HOH A 14 614 95 HOH HOH . 
G 5 HOH A 15 615 217 HOH HOH . 
G 5 HOH A 16 616 203 HOH HOH . 
G 5 HOH A 17 617 146 HOH HOH . 
G 5 HOH A 18 618 46 HOH HOH . 
G 5 HOH A 19 619 194 HOH HOH . 
G 5 HOH A 20 620 210 HOH HOH . 
G 5 HOH A 21 621 196 HOH HOH . 
G 5 HOH A 22 622 200 HOH HOH . 
G 5 HOH A 23 623 27 HOH HOH . 
G 5 HOH A 24 624 7 HOH HOH . 
G 5 HOH A 25 625 125 HOH HOH . 
G 5 HOH A 26 626 25 HOH HOH . 
G 5 HOH A 27 627 65 HOH HOH . 
G 5 HOH A 28 628 17 HOH HOH . 
G 5 HOH A 29 629 87 HOH HOH . 
G 5 HOH A 30 630 182 HOH HOH . 
G 5 HOH A 31 631 167 HOH HOH . 
G 5 HOH A 32 632 104 HOH HOH . 
G 5 HOH A 33 633 28 HOH HOH . 
G 5 HOH A 34 634 19 HOH HOH . 
G 5 HOH A 35 635 35 HOH HOH . 
G 5 HOH A 36 636 220 HOH HOH . 
G 5 HOH A 37 637 54 HOH HOH . 
G 5 HOH A 38 638 29 HOH HOH . 
G 5 HOH A 39 639 18 HOH HOH . 
G 5 HOH A 40 640 77 HOH HOH . 
G 5 HOH A 41 641 49 HOH HOH . 
G 5 HOH A 42 642 20 HOH HOH . 
G 5 HOH A 43 643 165 HOH HOH . 
G 5 HOH A 44 644 53 HOH HOH . 
G 5 HOH A 45 645 60 HOH HOH . 
G 5 HOH A 46 646 101 HOH HOH . 
G 5 HOH A 47 647 123 HOH HOH . 
G 5 HOH A 48 648 5 HOH HOH . 
G 5 HOH A 49 649 143 HOH HOH . 
G 5 HOH A 50 650 10 HOH HOH . 
G 5 HOH A 51 651 36 HOH HOH . 
G 5 HOH A 52 652 86 HOH HOH . 
G 5 HOH A 53 653 169 HOH HOH . 
G 5 HOH A 54 654 42 HOH HOH . 
G 5 HOH A 55 655 108 HOH HOH . 
G 5 HOH A 56 656 79 HOH HOH . 
G 5 HOH A 57 657 207 HOH HOH . 
G 5 HOH A 58 658 26 HOH HOH . 
G 5 HOH A 59 659 68 HOH HOH . 
G 5 HOH A 60 660 107 HOH HOH . 
G 5 HOH A 61 661 30 HOH HOH . 
G 5 HOH A 62 662 3 HOH HOH . 
G 5 HOH A 63 663 2 HOH HOH . 
G 5 HOH A 64 664 6 HOH HOH . 
G 5 HOH A 65 665 22 HOH HOH . 
G 5 HOH A 66 666 21 HOH HOH . 
G 5 HOH A 67 667 168 HOH HOH . 
G 5 HOH A 68 668 33 HOH HOH . 
G 5 HOH A 69 669 80 HOH HOH . 
G 5 HOH A 70 670 128 HOH HOH . 
G 5 HOH A 71 671 41 HOH HOH . 
G 5 HOH A 72 672 39 HOH HOH . 
G 5 HOH A 73 673 145 HOH HOH . 
G 5 HOH A 74 674 23 HOH HOH . 
G 5 HOH A 75 675 84 HOH HOH . 
G 5 HOH A 76 676 37 HOH HOH . 
G 5 HOH A 77 677 43 HOH HOH . 
G 5 HOH A 78 678 38 HOH HOH . 
G 5 HOH A 79 679 62 HOH HOH . 
G 5 HOH A 80 680 64 HOH HOH . 
G 5 HOH A 81 681 139 HOH HOH . 
G 5 HOH A 82 682 198 HOH HOH . 
G 5 HOH A 83 683 75 HOH HOH . 
G 5 HOH A 84 684 81 HOH HOH . 
G 5 HOH A 85 685 177 HOH HOH . 
G 5 HOH A 86 686 178 HOH HOH . 
G 5 HOH A 87 687 116 HOH HOH . 
G 5 HOH A 88 688 156 HOH HOH . 
G 5 HOH A 89 689 55 HOH HOH . 
G 5 HOH A 90 690 85 HOH HOH . 
G 5 HOH A 91 691 31 HOH HOH . 
G 5 HOH A 92 692 151 HOH HOH . 
G 5 HOH A 93 693 40 HOH HOH . 
G 5 HOH A 94 694 204 HOH HOH . 
G 5 HOH A 95 695 58 HOH HOH . 
G 5 HOH A 96 696 82 HOH HOH . 
G 5 HOH A 97 697 147 HOH HOH . 
G 5 HOH A 98 698 170 HOH HOH . 
G 5 HOH A 99 699 186 HOH HOH . 
G 5 HOH A 100 700 187 HOH HOH . 
G 5 HOH A 101 701 179 HOH HOH . 
G 5 HOH A 102 702 152 HOH HOH . 
G 5 HOH A 103 703 59 HOH HOH . 
G 5 HOH A 104 704 157 HOH HOH . 
G 5 HOH A 105 705 15 HOH HOH . 
G 5 HOH A 106 706 161 HOH HOH . 
G 5 HOH A 107 707 94 HOH HOH . 
G 5 HOH A 108 708 56 HOH HOH . 
G 5 HOH A 109 709 47 HOH HOH . 
G 5 HOH A 110 710 67 HOH HOH . 
G 5 HOH A 111 711 142 HOH HOH . 
G 5 HOH A 112 712 205 HOH HOH . 
G 5 HOH A 113 713 111 HOH HOH . 
G 5 HOH A 114 714 192 HOH HOH . 
G 5 HOH A 115 715 112 HOH HOH . 
G 5 HOH A 116 716 197 HOH HOH . 
G 5 HOH A 117 717 154 HOH HOH . 
G 5 HOH A 118 718 153 HOH HOH . 
G 5 HOH A 119 719 11 HOH HOH . 
G 5 HOH A 120 720 12 HOH HOH . 
G 5 HOH A 121 721 195 HOH HOH . 
G 5 HOH A 122 722 78 HOH HOH . 
G 5 HOH A 123 723 109 HOH HOH . 
G 5 HOH A 124 724 52 HOH HOH . 
G 5 HOH A 125 725 130 HOH HOH . 
G 5 HOH A 126 726 97 HOH HOH . 
G 5 HOH A 127 727 32 HOH HOH . 
G 5 HOH A 128 728 9 HOH HOH . 
G 5 HOH A 129 729 216 HOH HOH . 
G 5 HOH A 130 730 70 HOH HOH . 
G 5 HOH A 131 731 44 HOH HOH . 
G 5 HOH A 132 732 126 HOH HOH . 
G 5 HOH A 133 733 74 HOH HOH . 
G 5 HOH A 134 734 13 HOH HOH . 
G 5 HOH A 135 735 163 HOH HOH . 
G 5 HOH A 136 736 8 HOH HOH . 
G 5 HOH A 137 737 105 HOH HOH . 
G 5 HOH A 138 738 99 HOH HOH . 
G 5 HOH A 139 739 61 HOH HOH . 
G 5 HOH A 140 740 181 HOH HOH . 
G 5 HOH A 141 741 96 HOH HOH . 
G 5 HOH A 142 742 159 HOH HOH . 
G 5 HOH A 143 743 137 HOH HOH . 
G 5 HOH A 144 744 76 HOH HOH . 
G 5 HOH A 145 745 218 HOH HOH . 
G 5 HOH A 146 746 150 HOH HOH . 
G 5 HOH A 147 747 114 HOH HOH . 
G 5 HOH A 148 748 176 HOH HOH . 
G 5 HOH A 149 749 93 HOH HOH . 
G 5 HOH A 150 750 175 HOH HOH . 
G 5 HOH A 151 751 14 HOH HOH . 
G 5 HOH A 152 752 98 HOH HOH . 
G 5 HOH A 153 753 122 HOH HOH . 
G 5 HOH A 154 754 188 HOH HOH . 
G 5 HOH A 155 755 89 HOH HOH . 
G 5 HOH A 156 756 73 HOH HOH . 
G 5 HOH A 157 757 110 HOH HOH . 
G 5 HOH A 158 758 117 HOH HOH . 
G 5 HOH A 159 759 90 HOH HOH . 
G 5 HOH A 160 760 121 HOH HOH . 
G 5 HOH A 161 761 66 HOH HOH . 
G 5 HOH A 162 762 100 HOH HOH . 
G 5 HOH A 163 763 92 HOH HOH . 
G 5 HOH A 164 764 103 HOH HOH . 
G 5 HOH A 165 765 45 HOH HOH . 
G 5 HOH A 166 766 120 HOH HOH . 
G 5 HOH A 167 767 115 HOH HOH . 
G 5 HOH A 168 768 141 HOH HOH . 
G 5 HOH A 169 769 190 HOH HOH . 
G 5 HOH A 170 770 69 HOH HOH . 
G 5 HOH A 171 771 34 HOH HOH . 
G 5 HOH A 172 772 211 HOH HOH . 
G 5 HOH A 173 773 63 HOH HOH . 
G 5 HOH A 174 774 106 HOH HOH . 
G 5 HOH A 175 775 134 HOH HOH . 
G 5 HOH A 176 776 164 HOH HOH . 
G 5 HOH A 177 777 202 HOH HOH . 
G 5 HOH A 178 778 1 HOH HOH . 
G 5 HOH A 179 779 185 HOH HOH . 
G 5 HOH A 180 780 4 HOH HOH . 
G 5 HOH A 181 781 184 HOH HOH . 
G 5 HOH A 182 782 160 HOH HOH . 
G 5 HOH A 183 783 51 HOH HOH . 
G 5 HOH A 184 784 162 HOH HOH . 
G 5 HOH A 185 785 213 HOH HOH . 
G 5 HOH A 186 786 201 HOH HOH . 
G 5 HOH A 187 787 118 HOH HOH . 
G 5 HOH A 188 788 124 HOH HOH . 
G 5 HOH A 189 789 180 HOH HOH . 
G 5 HOH A 190 790 155 HOH HOH . 
G 5 HOH A 191 791 174 HOH HOH . 
G 5 HOH A 192 792 72 HOH HOH . 
G 5 HOH A 193 793 191 HOH HOH . 
G 5 HOH A 194 794 57 HOH HOH . 
G 5 HOH A 195 795 193 HOH HOH . 
G 5 HOH A 196 796 144 HOH HOH . 
G 5 HOH A 197 797 136 HOH HOH . 
G 5 HOH A 198 798 127 HOH HOH . 
G 5 HOH A 199 799 133 HOH HOH . 
G 5 HOH A 200 800 183 HOH HOH . 
G 5 HOH A 201 801 199 HOH HOH . 
G 5 HOH A 202 802 206 HOH HOH . 
G 5 HOH A 203 803 131 HOH HOH . 
G 5 HOH A 204 804 212 HOH HOH . 
G 5 HOH A 205 805 71 HOH HOH . 
G 5 HOH A 206 806 129 HOH HOH . 
G 5 HOH A 207 807 91 HOH HOH . 
G 5 HOH A 208 808 208 HOH HOH . 
G 5 HOH A 209 809 215 HOH HOH . 
G 5 HOH A 210 810 148 HOH HOH . 
G 5 HOH A 211 811 173 HOH HOH . 
G 5 HOH A 212 812 50 HOH HOH . 
G 5 HOH A 213 813 102 HOH HOH . 
G 5 HOH A 214 814 166 HOH HOH . 
G 5 HOH A 215 815 219 HOH HOH . 
G 5 HOH A 216 816 158 HOH HOH . 
G 5 HOH A 217 817 209 HOH HOH . 
G 5 HOH A 218 818 83 HOH HOH . 
G 5 HOH A 219 819 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 5.545 1.773 -5.652 1 53.7 ? C1 EDO 505 A 1 
HETATM 2 O O1 EDO . . . F 4 6.924 2.156 -5.735 1 50.17 ? O1 EDO 505 A 1 
HETATM 3 C C2 EDO . . . F 4 5.382 0.766 -4.522 1 51.27 ? C2 EDO 505 A 1 
HETATM 4 O O2 EDO . . . F 4 6.244 -0.352 -4.777 1 53.08 ? O2 EDO 505 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#