data_6ON6
#
_model_server_result.job_id            -d7sFtJFtk_vNKatWazyIg 
_model_server_result.datetime_utc      '2025-04-27 19:58:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6on6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    6ON6 
#
_exptl.entry_id    6ON6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6ON6 
_cell.length_a            46.61 
_cell.length_b            46.61 
_cell.length_c            196.849 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ON6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -23.305 40.365444 32.808167 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 46 1_555 A SG CYS 93 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 90 A ASN 108 1_555 C C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6ON6 
_atom_sites.fract_transf_matrix[1][1]    0.021455 
_atom_sites.fract_transf_matrix[1][2]    0.012387 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 183 GOL GOL . 
C 3 NAG A 1 202 901 NAG NAG . 
D 4 HOH A 1 301 29 HOH HOH . 
D 4 HOH A 2 302 75 HOH HOH . 
D 4 HOH A 3 303 35 HOH HOH . 
D 4 HOH A 4 304 21 HOH HOH . 
D 4 HOH A 5 305 66 HOH HOH . 
D 4 HOH A 6 306 77 HOH HOH . 
D 4 HOH A 7 307 78 HOH HOH . 
D 4 HOH A 8 308 67 HOH HOH . 
D 4 HOH A 9 309 57 HOH HOH . 
D 4 HOH A 10 310 97 HOH HOH . 
D 4 HOH A 11 311 79 HOH HOH . 
D 4 HOH A 12 312 89 HOH HOH . 
D 4 HOH A 13 313 7 HOH HOH . 
D 4 HOH A 14 314 81 HOH HOH . 
D 4 HOH A 15 315 76 HOH HOH . 
D 4 HOH A 16 316 26 HOH HOH . 
D 4 HOH A 17 317 34 HOH HOH . 
D 4 HOH A 18 318 15 HOH HOH . 
D 4 HOH A 19 319 8 HOH HOH . 
D 4 HOH A 20 320 17 HOH HOH . 
D 4 HOH A 21 321 54 HOH HOH . 
D 4 HOH A 22 322 86 HOH HOH . 
D 4 HOH A 23 323 44 HOH HOH . 
D 4 HOH A 24 324 11 HOH HOH . 
D 4 HOH A 25 325 19 HOH HOH . 
D 4 HOH A 26 326 68 HOH HOH . 
D 4 HOH A 27 327 65 HOH HOH . 
D 4 HOH A 28 328 9 HOH HOH . 
D 4 HOH A 29 329 22 HOH HOH . 
D 4 HOH A 30 330 16 HOH HOH . 
D 4 HOH A 31 331 2 HOH HOH . 
D 4 HOH A 32 332 10 HOH HOH . 
D 4 HOH A 33 333 20 HOH HOH . 
D 4 HOH A 34 334 80 HOH HOH . 
D 4 HOH A 35 335 71 HOH HOH . 
D 4 HOH A 36 336 51 HOH HOH . 
D 4 HOH A 37 337 24 HOH HOH . 
D 4 HOH A 38 338 12 HOH HOH . 
D 4 HOH A 39 339 62 HOH HOH . 
D 4 HOH A 40 340 23 HOH HOH . 
D 4 HOH A 41 341 18 HOH HOH . 
D 4 HOH A 42 342 32 HOH HOH . 
D 4 HOH A 43 343 39 HOH HOH . 
D 4 HOH A 44 344 6 HOH HOH . 
D 4 HOH A 45 345 31 HOH HOH . 
D 4 HOH A 46 346 93 HOH HOH . 
D 4 HOH A 47 347 52 HOH HOH . 
D 4 HOH A 48 348 82 HOH HOH . 
D 4 HOH A 49 349 13 HOH HOH . 
D 4 HOH A 50 350 56 HOH HOH . 
D 4 HOH A 51 351 58 HOH HOH . 
D 4 HOH A 52 352 46 HOH HOH . 
D 4 HOH A 53 353 1 HOH HOH . 
D 4 HOH A 54 354 3 HOH HOH . 
D 4 HOH A 55 355 41 HOH HOH . 
D 4 HOH A 56 356 36 HOH HOH . 
D 4 HOH A 57 357 30 HOH HOH . 
D 4 HOH A 58 358 25 HOH HOH . 
D 4 HOH A 59 359 5 HOH HOH . 
D 4 HOH A 60 360 4 HOH HOH . 
D 4 HOH A 61 361 38 HOH HOH . 
D 4 HOH A 62 362 33 HOH HOH . 
D 4 HOH A 63 363 95 HOH HOH . 
D 4 HOH A 64 364 74 HOH HOH . 
D 4 HOH A 65 365 84 HOH HOH . 
D 4 HOH A 66 366 64 HOH HOH . 
D 4 HOH A 67 367 83 HOH HOH . 
D 4 HOH A 68 368 42 HOH HOH . 
D 4 HOH A 69 369 72 HOH HOH . 
D 4 HOH A 70 370 27 HOH HOH . 
D 4 HOH A 71 371 37 HOH HOH . 
D 4 HOH A 72 372 28 HOH HOH . 
D 4 HOH A 73 373 48 HOH HOH . 
D 4 HOH A 74 374 96 HOH HOH . 
D 4 HOH A 75 375 70 HOH HOH . 
D 4 HOH A 76 376 91 HOH HOH . 
D 4 HOH A 77 377 69 HOH HOH . 
D 4 HOH A 78 378 59 HOH HOH . 
D 4 HOH A 79 379 47 HOH HOH . 
D 4 HOH A 80 380 43 HOH HOH . 
D 4 HOH A 81 381 73 HOH HOH . 
D 4 HOH A 82 382 61 HOH HOH . 
D 4 HOH A 83 383 94 HOH HOH . 
D 4 HOH A 84 384 50 HOH HOH . 
D 4 HOH A 85 385 55 HOH HOH . 
D 4 HOH A 86 386 60 HOH HOH . 
D 4 HOH A 87 387 40 HOH HOH . 
D 4 HOH A 88 388 49 HOH HOH . 
D 4 HOH A 89 389 88 HOH HOH . 
D 4 HOH A 90 390 90 HOH HOH . 
D 4 HOH A 91 391 92 HOH HOH . 
D 4 HOH A 92 392 45 HOH HOH . 
D 4 HOH A 93 393 14 HOH HOH . 
D 4 HOH A 94 394 63 HOH HOH . 
D 4 HOH A 95 395 85 HOH HOH . 
D 4 HOH A 96 396 87 HOH HOH . 
D 4 HOH A 97 397 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -17.903 7.466 12.461 1 49.19 ? C1 NAG 202 A 1 
HETATM 2 C C2 NAG . . . C 3 -19.011 6.982 13.4 1 51.83 ? C2 NAG 202 A 1 
HETATM 3 C C3 NAG . . . C 3 -19.952 6.011 12.683 1 52.89 ? C3 NAG 202 A 1 
HETATM 4 C C4 NAG . . . C 3 -20.426 6.579 11.352 1 53.31 ? C4 NAG 202 A 1 
HETATM 5 C C5 NAG . . . C 3 -19.235 7.037 10.519 1 51.7 ? C5 NAG 202 A 1 
HETATM 6 C C6 NAG . . . C 3 -19.637 7.72 9.231 1 53.54 ? C6 NAG 202 A 1 
HETATM 7 C C7 NAG . . . C 3 -18.787 6.653 15.821 1 56.88 ? C7 NAG 202 A 1 
HETATM 8 C C8 NAG . . . C 3 -19.854 7.699 15.964 1 55.6 ? C8 NAG 202 A 1 
HETATM 9 N N2 NAG . . . C 3 -18.43 6.349 14.571 1 56.43 ? N2 NAG 202 A 1 
HETATM 10 O O3 NAG . . . C 3 -21.076 5.764 13.521 1 56.26 ? O3 NAG 202 A 1 
HETATM 11 O O4 NAG . . . C 3 -21.15 5.586 10.635 1 57.35 ? O4 NAG 202 A 1 
HETATM 12 O O5 NAG . . . C 3 -18.477 7.993 11.27 1 49.24 ? O5 NAG 202 A 1 
HETATM 13 O O6 NAG . . . C 3 -18.529 7.886 8.354 1 55.77 ? O6 NAG 202 A 1 
HETATM 14 O O7 NAG . . . C 3 -18.272 6.107 16.793 1 62.49 ? O7 NAG 202 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#