data_6ON9 # _model_server_result.job_id miuOl7g2Of6p9LSm5L46fw _model_server_result.datetime_utc '2024-11-09 02:35:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6on9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 6ON9 # _exptl.entry_id 6ON9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ON9 _cell.length_a 80.078 _cell.length_b 80.078 _cell.length_c 166.622 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ON9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 901 NAG 3 n C FUC 2 C 2 FUC B 903 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 29 1_555 A SG CYS 97 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? disulf ? disulf2 A SG CYS 39 A CYS 57 1_555 A SG CYS 100 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf3 B SG CYS 28 B CYS 46 1_555 B SG CYS 93 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? covale ? covale1 B ND2 ASN 90 B ASN 108 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? metalc ? metalc1 F O HOH . A HOH 272 6_454 E NA NA . B NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 B O THR 104 B THR 122 1_555 E NA NA . B NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 E NA NA . B NA 904 1_555 G O HOH . B HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc4 E NA NA . B NA 904 1_555 G O HOH . B HOH 1075 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc5 E NA NA . B NA 904 1_555 G O HOH . B HOH 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 E NA NA . B NA 904 1_555 G O HOH . B HOH 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ON9 _atom_sites.fract_transf_matrix[1][1] 0.012488 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 B 1 903 1001 SO4 SO4 . E 5 NA B 1 904 1101 NA NA . F 6 HOH A 1 201 2 HOH HOH . F 6 HOH A 2 202 75 HOH HOH . F 6 HOH A 3 203 107 HOH HOH . F 6 HOH A 4 204 159 HOH HOH . F 6 HOH A 5 205 115 HOH HOH . F 6 HOH A 6 206 90 HOH HOH . F 6 HOH A 7 207 12 HOH HOH . F 6 HOH A 8 208 10 HOH HOH . F 6 HOH A 9 209 93 HOH HOH . F 6 HOH A 10 210 171 HOH HOH . F 6 HOH A 11 211 83 HOH HOH . F 6 HOH A 12 212 18 HOH HOH . F 6 HOH A 13 213 122 HOH HOH . F 6 HOH A 14 214 80 HOH HOH . F 6 HOH A 15 215 13 HOH HOH . F 6 HOH A 16 216 86 HOH HOH . F 6 HOH A 17 217 19 HOH HOH . F 6 HOH A 18 218 149 HOH HOH . F 6 HOH A 19 219 153 HOH HOH . F 6 HOH A 20 220 27 HOH HOH . F 6 HOH A 21 221 20 HOH HOH . F 6 HOH A 22 222 103 HOH HOH . F 6 HOH A 23 223 67 HOH HOH . F 6 HOH A 24 224 44 HOH HOH . F 6 HOH A 25 225 40 HOH HOH . F 6 HOH A 26 226 74 HOH HOH . F 6 HOH A 27 227 144 HOH HOH . F 6 HOH A 28 228 113 HOH HOH . F 6 HOH A 29 229 33 HOH HOH . F 6 HOH A 30 230 14 HOH HOH . F 6 HOH A 31 231 16 HOH HOH . F 6 HOH A 32 232 21 HOH HOH . F 6 HOH A 33 233 5 HOH HOH . F 6 HOH A 34 234 46 HOH HOH . F 6 HOH A 35 235 145 HOH HOH . F 6 HOH A 36 236 11 HOH HOH . F 6 HOH A 37 237 54 HOH HOH . F 6 HOH A 38 238 63 HOH HOH . F 6 HOH A 39 239 7 HOH HOH . F 6 HOH A 40 240 163 HOH HOH . F 6 HOH A 41 241 138 HOH HOH . F 6 HOH A 42 242 95 HOH HOH . F 6 HOH A 43 243 73 HOH HOH . F 6 HOH A 44 244 158 HOH HOH . F 6 HOH A 45 245 179 HOH HOH . F 6 HOH A 46 246 117 HOH HOH . F 6 HOH A 47 247 98 HOH HOH . F 6 HOH A 48 248 61 HOH HOH . F 6 HOH A 49 249 32 HOH HOH . F 6 HOH A 50 250 30 HOH HOH . F 6 HOH A 51 251 142 HOH HOH . F 6 HOH A 52 252 104 HOH HOH . F 6 HOH A 53 253 166 HOH HOH . F 6 HOH A 54 254 59 HOH HOH . F 6 HOH A 55 255 8 HOH HOH . F 6 HOH A 56 256 151 HOH HOH . F 6 HOH A 57 257 41 HOH HOH . F 6 HOH A 58 258 128 HOH HOH . F 6 HOH A 59 259 154 HOH HOH . F 6 HOH A 60 260 50 HOH HOH . F 6 HOH A 61 261 47 HOH HOH . F 6 HOH A 62 262 112 HOH HOH . F 6 HOH A 63 263 84 HOH HOH . F 6 HOH A 64 264 66 HOH HOH . F 6 HOH A 65 265 127 HOH HOH . F 6 HOH A 66 266 43 HOH HOH . F 6 HOH A 67 267 152 HOH HOH . F 6 HOH A 68 268 148 HOH HOH . F 6 HOH A 69 269 89 HOH HOH . F 6 HOH A 70 270 162 HOH HOH . F 6 HOH A 71 271 82 HOH HOH . F 6 HOH A 72 272 109 HOH HOH . F 6 HOH A 73 273 177 HOH HOH . F 6 HOH A 74 274 96 HOH HOH . F 6 HOH A 75 275 77 HOH HOH . F 6 HOH A 76 276 172 HOH HOH . F 6 HOH A 77 277 174 HOH HOH . F 6 HOH A 78 278 57 HOH HOH . F 6 HOH A 79 279 114 HOH HOH . F 6 HOH A 80 280 173 HOH HOH . F 6 HOH A 81 281 62 HOH HOH . F 6 HOH A 82 282 155 HOH HOH . F 6 HOH A 83 283 121 HOH HOH . F 6 HOH A 84 284 165 HOH HOH . G 6 HOH B 1 1001 150 HOH HOH . G 6 HOH B 2 1002 106 HOH HOH . G 6 HOH B 3 1003 78 HOH HOH . G 6 HOH B 4 1004 55 HOH HOH . G 6 HOH B 5 1005 70 HOH HOH . G 6 HOH B 6 1006 3 HOH HOH . G 6 HOH B 7 1007 87 HOH HOH . G 6 HOH B 8 1008 49 HOH HOH . G 6 HOH B 9 1009 129 HOH HOH . G 6 HOH B 10 1010 124 HOH HOH . G 6 HOH B 11 1011 105 HOH HOH . G 6 HOH B 12 1012 116 HOH HOH . G 6 HOH B 13 1013 9 HOH HOH . G 6 HOH B 14 1014 15 HOH HOH . G 6 HOH B 15 1015 100 HOH HOH . G 6 HOH B 16 1016 160 HOH HOH . G 6 HOH B 17 1017 170 HOH HOH . G 6 HOH B 18 1018 4 HOH HOH . G 6 HOH B 19 1019 133 HOH HOH . G 6 HOH B 20 1020 88 HOH HOH . G 6 HOH B 21 1021 6 HOH HOH . G 6 HOH B 22 1022 26 HOH HOH . G 6 HOH B 23 1023 164 HOH HOH . G 6 HOH B 24 1024 29 HOH HOH . G 6 HOH B 25 1025 58 HOH HOH . G 6 HOH B 26 1026 126 HOH HOH . G 6 HOH B 27 1027 39 HOH HOH . G 6 HOH B 28 1028 79 HOH HOH . G 6 HOH B 29 1029 102 HOH HOH . G 6 HOH B 30 1030 45 HOH HOH . G 6 HOH B 31 1031 17 HOH HOH . G 6 HOH B 32 1032 53 HOH HOH . G 6 HOH B 33 1033 24 HOH HOH . G 6 HOH B 34 1034 119 HOH HOH . G 6 HOH B 35 1035 1 HOH HOH . G 6 HOH B 36 1036 22 HOH HOH . G 6 HOH B 37 1037 25 HOH HOH . G 6 HOH B 38 1038 136 HOH HOH . G 6 HOH B 39 1039 134 HOH HOH . G 6 HOH B 40 1040 135 HOH HOH . G 6 HOH B 41 1041 37 HOH HOH . G 6 HOH B 42 1042 94 HOH HOH . G 6 HOH B 43 1043 48 HOH HOH . G 6 HOH B 44 1044 23 HOH HOH . G 6 HOH B 45 1045 168 HOH HOH . G 6 HOH B 46 1046 137 HOH HOH . G 6 HOH B 47 1047 68 HOH HOH . G 6 HOH B 48 1048 120 HOH HOH . G 6 HOH B 49 1049 81 HOH HOH . G 6 HOH B 50 1050 130 HOH HOH . G 6 HOH B 51 1051 56 HOH HOH . G 6 HOH B 52 1052 123 HOH HOH . G 6 HOH B 53 1053 51 HOH HOH . G 6 HOH B 54 1054 38 HOH HOH . G 6 HOH B 55 1055 156 HOH HOH . G 6 HOH B 56 1056 101 HOH HOH . G 6 HOH B 57 1057 97 HOH HOH . G 6 HOH B 58 1058 31 HOH HOH . G 6 HOH B 59 1059 143 HOH HOH . G 6 HOH B 60 1060 91 HOH HOH . G 6 HOH B 61 1061 28 HOH HOH . G 6 HOH B 62 1062 131 HOH HOH . G 6 HOH B 63 1063 34 HOH HOH . G 6 HOH B 64 1064 35 HOH HOH . G 6 HOH B 65 1065 69 HOH HOH . G 6 HOH B 66 1066 157 HOH HOH . G 6 HOH B 67 1067 140 HOH HOH . G 6 HOH B 68 1068 52 HOH HOH . G 6 HOH B 69 1069 175 HOH HOH . G 6 HOH B 70 1070 72 HOH HOH . G 6 HOH B 71 1071 71 HOH HOH . G 6 HOH B 72 1072 141 HOH HOH . G 6 HOH B 73 1073 180 HOH HOH . G 6 HOH B 74 1074 161 HOH HOH . G 6 HOH B 75 1075 111 HOH HOH . G 6 HOH B 76 1076 169 HOH HOH . G 6 HOH B 77 1077 139 HOH HOH . G 6 HOH B 78 1078 147 HOH HOH . G 6 HOH B 79 1079 176 HOH HOH . G 6 HOH B 80 1080 108 HOH HOH . G 6 HOH B 81 1081 178 HOH HOH . G 6 HOH B 82 1082 65 HOH HOH . G 6 HOH B 83 1083 167 HOH HOH . G 6 HOH B 84 1084 125 HOH HOH . G 6 HOH B 85 1085 42 HOH HOH . G 6 HOH B 86 1086 99 HOH HOH . G 6 HOH B 87 1087 60 HOH HOH . G 6 HOH B 88 1088 146 HOH HOH . G 6 HOH B 89 1089 36 HOH HOH . G 6 HOH B 90 1090 85 HOH HOH . G 6 HOH B 91 1091 76 HOH HOH . G 6 HOH B 92 1092 110 HOH HOH . G 6 HOH B 93 1093 118 HOH HOH . G 6 HOH B 94 1094 64 HOH HOH . G 6 HOH B 95 1095 92 HOH HOH . G 6 HOH B 96 1096 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -20.809 _atom_site.Cartn_y 23.122 _atom_site.Cartn_z -22.137 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 904 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #