data_6ONE # _model_server_result.job_id DIZqhWO1BMQAYESwWaW9xQ _model_server_result.datetime_utc '2024-10-17 22:09:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6one # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":512}' # _entry.id 6ONE # _exptl.entry_id 6ONE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.74 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (3S)-3-[(4-chloro-3-fluorophenyl)carbamoyl]piperidine-1-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ONE _cell.length_a 66.29 _cell.length_b 66.95 _cell.length_c 86.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 A SG CYS 33 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 78 A CYS 119 1_555 A SG CYS 91 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 104 A CYS 218 1_555 A SG CYS 133 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 114 A CYS 228 1_555 A SG CYS 125 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 182 A CYS 296 1_555 A SG CYS 201 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf6 A SG CYS 247 A CYS 378 1_555 A SG CYS 308 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 A SG CYS 254 A CYS 385 1_555 A SG CYS 281 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 264 A CYS 395 1_555 A SG CYS 273 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 120 A ASN 234 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 127 A ASN 241 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 A ND2 ASN 148 A ASN 262 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 162 A ASN 276 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 175 A ASN 289 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 A ND2 ASN 181 A ASN 295 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale7 A ND2 ASN 204 A ASN 334 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale8 A ND2 ASN 225 A ASN 355 1_555 J C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 A ND2 ASN 255 A ASN 386 1_555 I C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 A ND2 ASN 261 A ASN 392 1_555 L C1 NAG . A NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale11 A ND2 ASN 311 A ASN 448 1_555 K C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C14 H16 Cl F N2 O3' _chem_comp.formula_weight 314.74 _chem_comp.id MVY _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (3S)-3-[(4-chloro-3-fluorophenyl)carbamoyl]piperidine-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C14 MVY sing 270 n n C14 C16 MVY doub 271 n y C14 C12 MVY sing 272 n y C16 C17 MVY sing 273 n y C12 F13 MVY sing 274 n n C12 C11 MVY doub 275 n y C17 C10 MVY doub 276 n y C11 C10 MVY sing 277 n y C10 N09 MVY sing 278 n n N09 C07 MVY sing 279 n n C07 O08 MVY doub 280 n n C07 C06 MVY sing 281 n n C06 C18 MVY sing 282 n n C06 C05 MVY sing 283 n n C18 C19 MVY sing 284 n n C19 C20 MVY sing 285 n n C05 N04 MVY sing 286 n n C20 N04 MVY sing 287 n n N04 C03 MVY sing 288 n n C03 O21 MVY doub 289 n n C03 O02 MVY sing 290 n n C01 O02 MVY sing 291 n n C11 H1 MVY sing 292 n n C16 H2 MVY sing 293 n n C17 H3 MVY sing 294 n n C18 H4 MVY sing 295 n n C18 H5 MVY sing 296 n n C19 H6 MVY sing 297 n n C19 H7 MVY sing 298 n n C20 H8 MVY sing 299 n n C20 H9 MVY sing 300 n n C01 H10 MVY sing 301 n n C01 H11 MVY sing 302 n n C01 H12 MVY sing 303 n n C05 H13 MVY sing 304 n n C05 H14 MVY sing 305 n n C06 H15 MVY sing 306 n n N09 H16 MVY sing 307 n n # _atom_sites.entry_id 6ONE _atom_sites.fract_transf_matrix[1][1] 0.015085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 502 NAG NAG . C 2 NAG A 1 502 503 NAG NAG . D 2 NAG A 1 503 504 NAG NAG . E 2 NAG A 1 504 505 NAG NAG . F 2 NAG A 1 505 506 NAG NAG . G 2 NAG A 1 506 507 NAG NAG . H 2 NAG A 1 507 508 NAG NAG . I 2 NAG A 1 508 509 NAG NAG . J 2 NAG A 1 509 510 NAG NAG . K 2 NAG A 1 510 511 NAG NAG . L 2 NAG A 1 511 512 NAG NAG . M 3 MVY A 1 512 513 MVY MVY . N 4 EPE A 1 513 514 EPE EPE . O 5 HOH A 1 601 660 HOH HOH . O 5 HOH A 2 602 637 HOH HOH . O 5 HOH A 3 603 691 HOH HOH . O 5 HOH A 4 604 667 HOH HOH . O 5 HOH A 5 605 626 HOH HOH . O 5 HOH A 6 606 671 HOH HOH . O 5 HOH A 7 607 707 HOH HOH . O 5 HOH A 8 608 693 HOH HOH . O 5 HOH A 9 609 624 HOH HOH . O 5 HOH A 10 610 694 HOH HOH . O 5 HOH A 11 611 628 HOH HOH . O 5 HOH A 12 612 701 HOH HOH . O 5 HOH A 13 613 704 HOH HOH . O 5 HOH A 14 614 674 HOH HOH . O 5 HOH A 15 615 669 HOH HOH . O 5 HOH A 16 616 653 HOH HOH . O 5 HOH A 17 617 659 HOH HOH . O 5 HOH A 18 618 631 HOH HOH . O 5 HOH A 19 619 642 HOH HOH . O 5 HOH A 20 620 656 HOH HOH . O 5 HOH A 21 621 601 HOH HOH . O 5 HOH A 22 622 652 HOH HOH . O 5 HOH A 23 623 604 HOH HOH . O 5 HOH A 24 624 608 HOH HOH . O 5 HOH A 25 625 607 HOH HOH . O 5 HOH A 26 626 665 HOH HOH . O 5 HOH A 27 627 619 HOH HOH . O 5 HOH A 28 628 705 HOH HOH . O 5 HOH A 29 629 636 HOH HOH . O 5 HOH A 30 630 612 HOH HOH . O 5 HOH A 31 631 682 HOH HOH . O 5 HOH A 32 632 602 HOH HOH . O 5 HOH A 33 633 603 HOH HOH . O 5 HOH A 34 634 609 HOH HOH . O 5 HOH A 35 635 697 HOH HOH . O 5 HOH A 36 636 670 HOH HOH . O 5 HOH A 37 637 645 HOH HOH . O 5 HOH A 38 638 689 HOH HOH . O 5 HOH A 39 639 687 HOH HOH . O 5 HOH A 40 640 654 HOH HOH . O 5 HOH A 41 641 606 HOH HOH . O 5 HOH A 42 642 684 HOH HOH . O 5 HOH A 43 643 629 HOH HOH . O 5 HOH A 44 644 675 HOH HOH . O 5 HOH A 45 645 663 HOH HOH . O 5 HOH A 46 646 644 HOH HOH . O 5 HOH A 47 647 640 HOH HOH . O 5 HOH A 48 648 685 HOH HOH . O 5 HOH A 49 649 641 HOH HOH . O 5 HOH A 50 650 643 HOH HOH . O 5 HOH A 51 651 661 HOH HOH . O 5 HOH A 52 652 634 HOH HOH . O 5 HOH A 53 653 647 HOH HOH . O 5 HOH A 54 654 625 HOH HOH . O 5 HOH A 55 655 650 HOH HOH . O 5 HOH A 56 656 649 HOH HOH . O 5 HOH A 57 657 664 HOH HOH . O 5 HOH A 58 658 696 HOH HOH . O 5 HOH A 59 659 700 HOH HOH . O 5 HOH A 60 660 639 HOH HOH . O 5 HOH A 61 661 610 HOH HOH . O 5 HOH A 62 662 638 HOH HOH . O 5 HOH A 63 663 630 HOH HOH . O 5 HOH A 64 664 615 HOH HOH . O 5 HOH A 65 665 695 HOH HOH . O 5 HOH A 66 666 658 HOH HOH . O 5 HOH A 67 667 605 HOH HOH . O 5 HOH A 68 668 632 HOH HOH . O 5 HOH A 69 669 614 HOH HOH . O 5 HOH A 70 670 655 HOH HOH . O 5 HOH A 71 671 657 HOH HOH . O 5 HOH A 72 672 651 HOH HOH . O 5 HOH A 73 673 692 HOH HOH . O 5 HOH A 74 674 688 HOH HOH . O 5 HOH A 75 675 621 HOH HOH . O 5 HOH A 76 676 702 HOH HOH . O 5 HOH A 77 677 611 HOH HOH . O 5 HOH A 78 678 620 HOH HOH . O 5 HOH A 79 679 680 HOH HOH . O 5 HOH A 80 680 673 HOH HOH . O 5 HOH A 81 681 616 HOH HOH . O 5 HOH A 82 682 681 HOH HOH . O 5 HOH A 83 683 683 HOH HOH . O 5 HOH A 84 684 698 HOH HOH . O 5 HOH A 85 685 668 HOH HOH . O 5 HOH A 86 686 635 HOH HOH . O 5 HOH A 87 687 618 HOH HOH . O 5 HOH A 88 688 623 HOH HOH . O 5 HOH A 89 689 613 HOH HOH . O 5 HOH A 90 690 646 HOH HOH . O 5 HOH A 91 691 678 HOH HOH . O 5 HOH A 92 692 662 HOH HOH . O 5 HOH A 93 693 627 HOH HOH . O 5 HOH A 94 694 690 HOH HOH . O 5 HOH A 95 695 617 HOH HOH . O 5 HOH A 96 696 648 HOH HOH . O 5 HOH A 97 697 703 HOH HOH . O 5 HOH A 98 698 679 HOH HOH . O 5 HOH A 99 699 672 HOH HOH . O 5 HOH A 100 700 622 HOH HOH . O 5 HOH A 101 701 699 HOH HOH . O 5 HOH A 102 702 633 HOH HOH . O 5 HOH A 103 703 686 HOH HOH . O 5 HOH A 104 704 666 HOH HOH . O 5 HOH A 105 705 677 HOH HOH . O 5 HOH A 106 706 706 HOH HOH . O 5 HOH A 107 707 676 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 MVY . . . M 3 -5.919 15.939 -16.19 1 30.71 ? C11 MVY 512 A 1 HETATM 2 C C12 MVY . . . M 3 -6.516 15.65 -17.402 1 26.14 ? C12 MVY 512 A 1 HETATM 3 C C14 MVY . . . M 3 -5.836 15.357 -18.594 1 29.33 ? C14 MVY 512 A 1 HETATM 4 C C16 MVY . . . M 3 -4.443 15.351 -18.566 1 30.8 ? C16 MVY 512 A 1 HETATM 5 C C17 MVY . . . M 3 -3.753 15.646 -17.33 1 32.11 ? C17 MVY 512 A 1 HETATM 6 C C18 MVY . . . M 3 -2.958 18.224 -12.064 1 45.59 ? C18 MVY 512 A 1 HETATM 7 C C19 MVY . . . M 3 -1.696 18.517 -11.218 1 47.23 ? C19 MVY 512 A 1 HETATM 8 C C20 MVY . . . M 3 -1.201 17.225 -10.466 1 47.24 ? C20 MVY 512 A 1 HETATM 9 C C01 MVY . . . M 3 -4.715 16.824 -8.24 1 62.87 ? C01 MVY 512 A 1 HETATM 10 C C03 MVY . . . M 3 -2.471 15.828 -8.696 1 69.36 ? C03 MVY 512 A 1 HETATM 11 C C05 MVY . . . M 3 -3.259 15.885 -11.172 1 43.8 ? C05 MVY 512 A 1 HETATM 12 C C06 MVY . . . M 3 -2.989 16.712 -12.466 1 41.96 ? C06 MVY 512 A 1 HETATM 13 C C07 MVY . . . M 3 -4.029 16.399 -13.597 1 37.64 ? C07 MVY 512 A 1 HETATM 14 C C10 MVY . . . M 3 -4.438 15.935 -16.147 1 32.87 ? C10 MVY 512 A 1 HETATM 15 F F13 MVY . . . M 3 -7.941 15.665 -17.387 1 36.88 ? F13 MVY 512 A 1 HETATM 16 N N04 MVY . . . M 3 -2.317 16.308 -10.041 1 56.22 ? N04 MVY 512 A 1 HETATM 17 N N09 MVY . . . M 3 -3.624 16.224 -14.96 1 34.83 ? N09 MVY 512 A 1 HETATM 18 O O02 MVY . . . M 3 -3.424 16.317 -7.787 1 76.05 ? O02 MVY 512 A 1 HETATM 19 O O08 MVY . . . M 3 -5.216 16.307 -13.267 1 32.64 ? O08 MVY 512 A 1 HETATM 20 O O21 MVY . . . M 3 -1.72 14.946 -8.262 1 76.25 ? O21 MVY 512 A 1 HETATM 21 CL CL1 MVY . . . M 3 -6.624 14.975 -20.191 1 45.73 ? CL1 MVY 512 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #