data_6ONG # _model_server_result.job_id wICe8ePhmrh1foyAaTi3wA _model_server_result.datetime_utc '2024-11-16 20:47:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ong # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":406}' # _entry.id 6ONG # _exptl.entry_id 6ONG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ONG _cell.length_a 59.084 _cell.length_b 67.237 _cell.length_c 67.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,R 1 1 B,H,I,J,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND1 HIS 55 A HIS 55 1_555 D O1 MWM . A MWM 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale2 A CE1 HIS 55 A HIS 55 1_555 D C1 MWM . A MWM 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.126 ? covale ? covale3 A CE1 HIS 55 A HIS 55 1_555 D C2 MWM . A MWM 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.57 ? covale ? covale4 A NE2 HIS 55 A HIS 55 1_555 D C1 MWM . A MWM 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.311 ? metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 I FE HEM . B HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 6ONG _atom_sites.fract_transf_matrix[1][1] 0.016925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 MWM A 1 202 201 MWM 4FC . E 4 EDO A 1 203 301 EDO EDO . F 5 SO4 A 1 204 1 SO4 SO4 . G 5 SO4 A 1 205 2 SO4 SO4 . H 4 EDO B 1 401 401 EDO EDO . I 2 HEM B 1 402 139 HEM HEM . J 4 EDO B 1 403 201 EDO EDO . K 3 MWM B 1 404 301 MWM 4FC . L 4 EDO B 1 405 401 EDO EDO . M 4 EDO B 1 406 501 EDO EDO . N 4 EDO B 1 407 601 EDO EDO . O 4 EDO B 1 408 701 EDO EDO . P 5 SO4 B 1 409 3 SO4 SO4 . Q 5 SO4 B 1 410 4 SO4 SO4 . R 6 HOH A 1 301 289 HOH HOH . R 6 HOH A 2 302 246 HOH HOH . R 6 HOH A 3 303 5 HOH HOH . R 6 HOH A 4 304 209 HOH HOH . R 6 HOH A 5 305 214 HOH HOH . R 6 HOH A 6 306 212 HOH HOH . R 6 HOH A 7 307 42 HOH HOH . R 6 HOH A 8 308 288 HOH HOH . R 6 HOH A 9 309 127 HOH HOH . R 6 HOH A 10 310 213 HOH HOH . R 6 HOH A 11 311 218 HOH HOH . R 6 HOH A 12 312 164 HOH HOH . R 6 HOH A 13 313 247 HOH HOH . R 6 HOH A 14 314 101 HOH HOH . R 6 HOH A 15 315 89 HOH HOH . R 6 HOH A 16 316 210 HOH HOH . R 6 HOH A 17 317 258 HOH HOH . R 6 HOH A 18 318 134 HOH HOH . R 6 HOH A 19 319 256 HOH HOH . R 6 HOH A 20 320 211 HOH HOH . R 6 HOH A 21 321 198 HOH HOH . R 6 HOH A 22 322 6 HOH HOH . R 6 HOH A 23 323 107 HOH HOH . R 6 HOH A 24 324 250 HOH HOH . R 6 HOH A 25 325 282 HOH HOH . R 6 HOH A 26 326 122 HOH HOH . R 6 HOH A 27 327 135 HOH HOH . R 6 HOH A 28 328 8 HOH HOH . R 6 HOH A 29 329 270 HOH HOH . R 6 HOH A 30 330 266 HOH HOH . R 6 HOH A 31 331 287 HOH HOH . R 6 HOH A 32 332 136 HOH HOH . R 6 HOH A 33 333 7 HOH HOH . R 6 HOH A 34 334 79 HOH HOH . R 6 HOH A 35 335 76 HOH HOH . R 6 HOH A 36 336 219 HOH HOH . R 6 HOH A 37 337 85 HOH HOH . R 6 HOH A 38 338 63 HOH HOH . R 6 HOH A 39 339 143 HOH HOH . R 6 HOH A 40 340 3 HOH HOH . R 6 HOH A 41 341 120 HOH HOH . R 6 HOH A 42 342 20 HOH HOH . R 6 HOH A 43 343 271 HOH HOH . R 6 HOH A 44 344 96 HOH HOH . R 6 HOH A 45 345 232 HOH HOH . R 6 HOH A 46 346 69 HOH HOH . R 6 HOH A 47 347 118 HOH HOH . R 6 HOH A 48 348 50 HOH HOH . R 6 HOH A 49 349 47 HOH HOH . R 6 HOH A 50 350 254 HOH HOH . R 6 HOH A 51 351 260 HOH HOH . R 6 HOH A 52 352 1 HOH HOH . R 6 HOH A 53 353 46 HOH HOH . R 6 HOH A 54 354 279 HOH HOH . R 6 HOH A 55 355 91 HOH HOH . R 6 HOH A 56 356 124 HOH HOH . R 6 HOH A 57 357 27 HOH HOH . R 6 HOH A 58 358 281 HOH HOH . R 6 HOH A 59 359 276 HOH HOH . R 6 HOH A 60 360 72 HOH HOH . R 6 HOH A 61 361 103 HOH HOH . R 6 HOH A 62 362 138 HOH HOH . R 6 HOH A 63 363 25 HOH HOH . R 6 HOH A 64 364 148 HOH HOH . R 6 HOH A 65 365 123 HOH HOH . R 6 HOH A 66 366 169 HOH HOH . R 6 HOH A 67 367 60 HOH HOH . R 6 HOH A 68 368 158 HOH HOH . R 6 HOH A 69 369 220 HOH HOH . R 6 HOH A 70 370 19 HOH HOH . R 6 HOH A 71 371 117 HOH HOH . R 6 HOH A 72 372 62 HOH HOH . R 6 HOH A 73 373 162 HOH HOH . R 6 HOH A 74 374 259 HOH HOH . R 6 HOH A 75 375 21 HOH HOH . R 6 HOH A 76 376 146 HOH HOH . R 6 HOH A 77 377 113 HOH HOH . R 6 HOH A 78 378 41 HOH HOH . R 6 HOH A 79 379 34 HOH HOH . R 6 HOH A 80 380 84 HOH HOH . R 6 HOH A 81 381 278 HOH HOH . R 6 HOH A 82 382 64 HOH HOH . R 6 HOH A 83 383 32 HOH HOH . R 6 HOH A 84 384 249 HOH HOH . R 6 HOH A 85 385 255 HOH HOH . R 6 HOH A 86 386 251 HOH HOH . R 6 HOH A 87 387 285 HOH HOH . R 6 HOH A 88 388 196 HOH HOH . R 6 HOH A 89 389 37 HOH HOH . R 6 HOH A 90 390 217 HOH HOH . R 6 HOH A 91 391 272 HOH HOH . R 6 HOH A 92 392 92 HOH HOH . R 6 HOH A 93 393 252 HOH HOH . R 6 HOH A 94 394 244 HOH HOH . R 6 HOH A 95 395 45 HOH HOH . R 6 HOH A 96 396 215 HOH HOH . R 6 HOH A 97 397 90 HOH HOH . R 6 HOH A 98 398 185 HOH HOH . R 6 HOH A 99 399 55 HOH HOH . R 6 HOH A 100 400 73 HOH HOH . R 6 HOH A 101 401 154 HOH HOH . R 6 HOH A 102 402 167 HOH HOH . R 6 HOH A 103 403 216 HOH HOH . R 6 HOH A 104 404 2 HOH HOH . R 6 HOH A 105 405 130 HOH HOH . R 6 HOH A 106 406 4 HOH HOH . R 6 HOH A 107 407 248 HOH HOH . R 6 HOH A 108 408 171 HOH HOH . R 6 HOH A 109 409 168 HOH HOH . R 6 HOH A 110 410 163 HOH HOH . R 6 HOH A 111 411 77 HOH HOH . R 6 HOH A 112 412 257 HOH HOH . R 6 HOH A 113 413 80 HOH HOH . R 6 HOH A 114 414 48 HOH HOH . R 6 HOH A 115 415 286 HOH HOH . R 6 HOH A 116 416 202 HOH HOH . R 6 HOH A 117 417 173 HOH HOH . R 6 HOH A 118 418 205 HOH HOH . R 6 HOH A 119 419 150 HOH HOH . R 6 HOH A 120 420 121 HOH HOH . R 6 HOH A 121 421 280 HOH HOH . R 6 HOH A 122 422 245 HOH HOH . R 6 HOH A 123 423 273 HOH HOH . R 6 HOH A 124 424 93 HOH HOH . R 6 HOH A 125 425 156 HOH HOH . R 6 HOH A 126 426 140 HOH HOH . R 6 HOH A 127 427 177 HOH HOH . R 6 HOH A 128 428 109 HOH HOH . R 6 HOH A 129 429 147 HOH HOH . R 6 HOH A 130 430 139 HOH HOH . R 6 HOH A 131 431 24 HOH HOH . R 6 HOH A 132 432 129 HOH HOH . R 6 HOH A 133 433 174 HOH HOH . R 6 HOH A 134 434 186 HOH HOH . S 6 HOH B 1 501 235 HOH HOH . S 6 HOH B 2 502 224 HOH HOH . S 6 HOH B 3 503 227 HOH HOH . S 6 HOH B 4 504 226 HOH HOH . S 6 HOH B 5 505 206 HOH HOH . S 6 HOH B 6 506 75 HOH HOH . S 6 HOH B 7 507 265 HOH HOH . S 6 HOH B 8 508 230 HOH HOH . S 6 HOH B 9 509 15 HOH HOH . S 6 HOH B 10 510 180 HOH HOH . S 6 HOH B 11 511 112 HOH HOH . S 6 HOH B 12 512 157 HOH HOH . S 6 HOH B 13 513 222 HOH HOH . S 6 HOH B 14 514 284 HOH HOH . S 6 HOH B 15 515 223 HOH HOH . S 6 HOH B 16 516 149 HOH HOH . S 6 HOH B 17 517 78 HOH HOH . S 6 HOH B 18 518 144 HOH HOH . S 6 HOH B 19 519 88 HOH HOH . S 6 HOH B 20 520 187 HOH HOH . S 6 HOH B 21 521 234 HOH HOH . S 6 HOH B 22 522 184 HOH HOH . S 6 HOH B 23 523 242 HOH HOH . S 6 HOH B 24 524 114 HOH HOH . S 6 HOH B 25 525 190 HOH HOH . S 6 HOH B 26 526 243 HOH HOH . S 6 HOH B 27 527 108 HOH HOH . S 6 HOH B 28 528 193 HOH HOH . S 6 HOH B 29 529 225 HOH HOH . S 6 HOH B 30 530 133 HOH HOH . S 6 HOH B 31 531 31 HOH HOH . S 6 HOH B 32 532 11 HOH HOH . S 6 HOH B 33 533 131 HOH HOH . S 6 HOH B 34 534 221 HOH HOH . S 6 HOH B 35 535 253 HOH HOH . S 6 HOH B 36 536 137 HOH HOH . S 6 HOH B 37 537 181 HOH HOH . S 6 HOH B 38 538 68 HOH HOH . S 6 HOH B 39 539 228 HOH HOH . S 6 HOH B 40 540 106 HOH HOH . S 6 HOH B 41 541 236 HOH HOH . S 6 HOH B 42 542 51 HOH HOH . S 6 HOH B 43 543 74 HOH HOH . S 6 HOH B 44 544 132 HOH HOH . S 6 HOH B 45 545 71 HOH HOH . S 6 HOH B 46 546 13 HOH HOH . S 6 HOH B 47 547 95 HOH HOH . S 6 HOH B 48 548 82 HOH HOH . S 6 HOH B 49 549 29 HOH HOH . S 6 HOH B 50 550 98 HOH HOH . S 6 HOH B 51 551 87 HOH HOH . S 6 HOH B 52 552 18 HOH HOH . S 6 HOH B 53 553 61 HOH HOH . S 6 HOH B 54 554 81 HOH HOH . S 6 HOH B 55 555 104 HOH HOH . S 6 HOH B 56 556 290 HOH HOH . S 6 HOH B 57 557 65 HOH HOH . S 6 HOH B 58 558 262 HOH HOH . S 6 HOH B 59 559 110 HOH HOH . S 6 HOH B 60 560 199 HOH HOH . S 6 HOH B 61 561 26 HOH HOH . S 6 HOH B 62 562 57 HOH HOH . S 6 HOH B 63 563 237 HOH HOH . S 6 HOH B 64 564 165 HOH HOH . S 6 HOH B 65 565 9 HOH HOH . S 6 HOH B 66 566 86 HOH HOH . S 6 HOH B 67 567 30 HOH HOH . S 6 HOH B 68 568 59 HOH HOH . S 6 HOH B 69 569 83 HOH HOH . S 6 HOH B 70 570 200 HOH HOH . S 6 HOH B 71 571 283 HOH HOH . S 6 HOH B 72 572 261 HOH HOH . S 6 HOH B 73 573 100 HOH HOH . S 6 HOH B 74 574 49 HOH HOH . S 6 HOH B 75 575 39 HOH HOH . S 6 HOH B 76 576 233 HOH HOH . S 6 HOH B 77 577 16 HOH HOH . S 6 HOH B 78 578 54 HOH HOH . S 6 HOH B 79 579 43 HOH HOH . S 6 HOH B 80 580 53 HOH HOH . S 6 HOH B 81 581 10 HOH HOH . S 6 HOH B 82 582 241 HOH HOH . S 6 HOH B 83 583 182 HOH HOH . S 6 HOH B 84 584 161 HOH HOH . S 6 HOH B 85 585 38 HOH HOH . S 6 HOH B 86 586 99 HOH HOH . S 6 HOH B 87 587 170 HOH HOH . S 6 HOH B 88 588 151 HOH HOH . S 6 HOH B 89 589 152 HOH HOH . S 6 HOH B 90 590 153 HOH HOH . S 6 HOH B 91 591 33 HOH HOH . S 6 HOH B 92 592 128 HOH HOH . S 6 HOH B 93 593 141 HOH HOH . S 6 HOH B 94 594 52 HOH HOH . S 6 HOH B 95 595 192 HOH HOH . S 6 HOH B 96 596 12 HOH HOH . S 6 HOH B 97 597 58 HOH HOH . S 6 HOH B 98 598 111 HOH HOH . S 6 HOH B 99 599 116 HOH HOH . S 6 HOH B 100 600 94 HOH HOH . S 6 HOH B 101 601 40 HOH HOH . S 6 HOH B 102 602 67 HOH HOH . S 6 HOH B 103 603 22 HOH HOH . S 6 HOH B 104 604 188 HOH HOH . S 6 HOH B 105 605 23 HOH HOH . S 6 HOH B 106 606 56 HOH HOH . S 6 HOH B 107 607 105 HOH HOH . S 6 HOH B 108 608 195 HOH HOH . S 6 HOH B 109 609 239 HOH HOH . S 6 HOH B 110 610 207 HOH HOH . S 6 HOH B 111 611 240 HOH HOH . S 6 HOH B 112 612 35 HOH HOH . S 6 HOH B 113 613 208 HOH HOH . S 6 HOH B 114 614 66 HOH HOH . S 6 HOH B 115 615 115 HOH HOH . S 6 HOH B 116 616 102 HOH HOH . S 6 HOH B 117 617 229 HOH HOH . S 6 HOH B 118 618 145 HOH HOH . S 6 HOH B 119 619 274 HOH HOH . S 6 HOH B 120 620 142 HOH HOH . S 6 HOH B 121 621 160 HOH HOH . S 6 HOH B 122 622 126 HOH HOH . S 6 HOH B 123 623 183 HOH HOH . S 6 HOH B 124 624 44 HOH HOH . S 6 HOH B 125 625 28 HOH HOH . S 6 HOH B 126 626 175 HOH HOH . S 6 HOH B 127 627 97 HOH HOH . S 6 HOH B 128 628 159 HOH HOH . S 6 HOH B 129 629 155 HOH HOH . S 6 HOH B 130 630 172 HOH HOH . S 6 HOH B 131 631 176 HOH HOH . S 6 HOH B 132 632 125 HOH HOH . S 6 HOH B 133 633 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 4 -33.436 -3.416 -21.763 1 21.34 ? C1 EDO 406 B 1 HETATM 2 O O1 EDO . . . M 4 -34.373 -2.459 -22.273 1 27.32 ? O1 EDO 406 B 1 HETATM 3 C C2 EDO . . . M 4 -33.755 -3.84 -20.394 1 28.69 ? C2 EDO 406 B 1 HETATM 4 O O2 EDO . . . M 4 -33.208 -2.935 -19.483 1 26.56 ? O2 EDO 406 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #