data_6ONH
#
_model_server_result.job_id            u3Vd1OfZr4arQTRrxsHPkA 
_model_server_result.datetime_utc      '2024-11-01 07:31:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6onh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    6ONH 
#
_exptl.entry_id    6ONH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ONH 
_cell.length_a            67.1 
_cell.length_b            66.83 
_cell.length_c            85.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ONH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 A SG CYS 33 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf2 A SG CYS 78 A CYS 119 1_555 A SG CYS 91 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 104 A CYS 218 1_555 A SG CYS 133 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 A SG CYS 114 A CYS 228 1_555 A SG CYS 125 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf5 A SG CYS 182 A CYS 296 1_555 A SG CYS 201 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 A SG CYS 247 A CYS 378 1_555 A SG CYS 308 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf7 A SG CYS 254 A CYS 385 1_555 A SG CYS 281 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf8 A SG CYS 264 A CYS 395 1_555 A SG CYS 273 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
covale ? covale1 A ND2 ASN 120 A ASN 234 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 127 A ASN 241 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale3 A ND2 ASN 148 A ASN 262 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale4 A ND2 ASN 162 A ASN 276 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale5 A ND2 ASN 175 A ASN 289 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale6 A ND2 ASN 181 A ASN 295 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale7 A ND2 ASN 204 A ASN 334 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale8 A ND2 ASN 225 A ASN 355 1_555 J C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? 
covale ? covale9 A ND2 ASN 255 A ASN 386 1_555 I C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale10 A ND2 ASN 311 A ASN 448 1_555 K C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 315 n n 
C1 O1 NAG sing 316 n n 
C1 O5 NAG sing 317 n n 
C1 H1 NAG sing 318 n n 
C2 C3 NAG sing 319 n n 
C2 N2 NAG sing 320 n n 
C2 H2 NAG sing 321 n n 
C3 C4 NAG sing 322 n n 
C3 O3 NAG sing 323 n n 
C3 H3 NAG sing 324 n n 
C4 C5 NAG sing 325 n n 
C4 O4 NAG sing 326 n n 
C4 H4 NAG sing 327 n n 
C5 C6 NAG sing 328 n n 
C5 O5 NAG sing 329 n n 
C5 H5 NAG sing 330 n n 
C6 O6 NAG sing 331 n n 
C6 H61 NAG sing 332 n n 
C6 H62 NAG sing 333 n n 
C7 C8 NAG sing 334 n n 
C7 N2 NAG sing 335 n n 
C7 O7 NAG doub 336 n n 
C8 H81 NAG sing 337 n n 
C8 H82 NAG sing 338 n n 
C8 H83 NAG sing 339 n n 
N2 HN2 NAG sing 340 n n 
O1 HO1 NAG sing 341 n n 
O3 HO3 NAG sing 342 n n 
O4 HO4 NAG sing 343 n n 
O6 HO6 NAG sing 344 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6ONH 
_atom_sites.fract_transf_matrix[1][1]    0.014903 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011646 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 502 NAG NAG . 
C 2 NAG A 1 502 503 NAG NAG . 
D 2 NAG A 1 503 504 NAG NAG . 
E 2 NAG A 1 504 505 NAG NAG . 
F 2 NAG A 1 505 506 NAG NAG . 
G 2 NAG A 1 506 507 NAG NAG . 
H 2 NAG A 1 507 508 NAG NAG . 
I 2 NAG A 1 508 509 NAG NAG . 
J 2 NAG A 1 509 510 NAG NAG . 
K 2 NAG A 1 510 511 NAG NAG . 
L 3 MWD A 1 511 512 MWD MWD . 
M 4 EPE A 1 512 513 EPE EPE . 
N 5 HOH A 1 601 693 HOH HOH . 
N 5 HOH A 2 602 677 HOH HOH . 
N 5 HOH A 3 603 716 HOH HOH . 
N 5 HOH A 4 604 723 HOH HOH . 
N 5 HOH A 5 605 701 HOH HOH . 
N 5 HOH A 6 606 698 HOH HOH . 
N 5 HOH A 7 607 704 HOH HOH . 
N 5 HOH A 8 608 690 HOH HOH . 
N 5 HOH A 9 609 705 HOH HOH . 
N 5 HOH A 10 610 626 HOH HOH . 
N 5 HOH A 11 611 610 HOH HOH . 
N 5 HOH A 12 612 611 HOH HOH . 
N 5 HOH A 13 613 648 HOH HOH . 
N 5 HOH A 14 614 729 HOH HOH . 
N 5 HOH A 15 615 659 HOH HOH . 
N 5 HOH A 16 616 647 HOH HOH . 
N 5 HOH A 17 617 615 HOH HOH . 
N 5 HOH A 18 618 691 HOH HOH . 
N 5 HOH A 19 619 686 HOH HOH . 
N 5 HOH A 20 620 641 HOH HOH . 
N 5 HOH A 21 621 632 HOH HOH . 
N 5 HOH A 22 622 618 HOH HOH . 
N 5 HOH A 23 623 656 HOH HOH . 
N 5 HOH A 24 624 711 HOH HOH . 
N 5 HOH A 25 625 682 HOH HOH . 
N 5 HOH A 26 626 727 HOH HOH . 
N 5 HOH A 27 627 661 HOH HOH . 
N 5 HOH A 28 628 673 HOH HOH . 
N 5 HOH A 29 629 631 HOH HOH . 
N 5 HOH A 30 630 665 HOH HOH . 
N 5 HOH A 31 631 607 HOH HOH . 
N 5 HOH A 32 632 613 HOH HOH . 
N 5 HOH A 33 633 662 HOH HOH . 
N 5 HOH A 34 634 639 HOH HOH . 
N 5 HOH A 35 635 643 HOH HOH . 
N 5 HOH A 36 636 702 HOH HOH . 
N 5 HOH A 37 637 637 HOH HOH . 
N 5 HOH A 38 638 652 HOH HOH . 
N 5 HOH A 39 639 674 HOH HOH . 
N 5 HOH A 40 640 638 HOH HOH . 
N 5 HOH A 41 641 669 HOH HOH . 
N 5 HOH A 42 642 663 HOH HOH . 
N 5 HOH A 43 643 601 HOH HOH . 
N 5 HOH A 44 644 710 HOH HOH . 
N 5 HOH A 45 645 636 HOH HOH . 
N 5 HOH A 46 646 602 HOH HOH . 
N 5 HOH A 47 647 700 HOH HOH . 
N 5 HOH A 48 648 619 HOH HOH . 
N 5 HOH A 49 649 609 HOH HOH . 
N 5 HOH A 50 650 689 HOH HOH . 
N 5 HOH A 51 651 635 HOH HOH . 
N 5 HOH A 52 652 680 HOH HOH . 
N 5 HOH A 53 653 683 HOH HOH . 
N 5 HOH A 54 654 664 HOH HOH . 
N 5 HOH A 55 655 719 HOH HOH . 
N 5 HOH A 56 656 623 HOH HOH . 
N 5 HOH A 57 657 684 HOH HOH . 
N 5 HOH A 58 658 624 HOH HOH . 
N 5 HOH A 59 659 681 HOH HOH . 
N 5 HOH A 60 660 644 HOH HOH . 
N 5 HOH A 61 661 688 HOH HOH . 
N 5 HOH A 62 662 724 HOH HOH . 
N 5 HOH A 63 663 645 HOH HOH . 
N 5 HOH A 64 664 628 HOH HOH . 
N 5 HOH A 65 665 605 HOH HOH . 
N 5 HOH A 66 666 629 HOH HOH . 
N 5 HOH A 67 667 612 HOH HOH . 
N 5 HOH A 68 668 617 HOH HOH . 
N 5 HOH A 69 669 679 HOH HOH . 
N 5 HOH A 70 670 633 HOH HOH . 
N 5 HOH A 71 671 668 HOH HOH . 
N 5 HOH A 72 672 630 HOH HOH . 
N 5 HOH A 73 673 650 HOH HOH . 
N 5 HOH A 74 674 634 HOH HOH . 
N 5 HOH A 75 675 728 HOH HOH . 
N 5 HOH A 76 676 685 HOH HOH . 
N 5 HOH A 77 677 731 HOH HOH . 
N 5 HOH A 78 678 651 HOH HOH . 
N 5 HOH A 79 679 622 HOH HOH . 
N 5 HOH A 80 680 675 HOH HOH . 
N 5 HOH A 81 681 620 HOH HOH . 
N 5 HOH A 82 682 694 HOH HOH . 
N 5 HOH A 83 683 606 HOH HOH . 
N 5 HOH A 84 684 640 HOH HOH . 
N 5 HOH A 85 685 672 HOH HOH . 
N 5 HOH A 86 686 604 HOH HOH . 
N 5 HOH A 87 687 625 HOH HOH . 
N 5 HOH A 88 688 603 HOH HOH . 
N 5 HOH A 89 689 707 HOH HOH . 
N 5 HOH A 90 690 708 HOH HOH . 
N 5 HOH A 91 691 699 HOH HOH . 
N 5 HOH A 92 692 608 HOH HOH . 
N 5 HOH A 93 693 687 HOH HOH . 
N 5 HOH A 94 694 642 HOH HOH . 
N 5 HOH A 95 695 646 HOH HOH . 
N 5 HOH A 96 696 655 HOH HOH . 
N 5 HOH A 97 697 703 HOH HOH . 
N 5 HOH A 98 698 667 HOH HOH . 
N 5 HOH A 99 699 713 HOH HOH . 
N 5 HOH A 100 700 658 HOH HOH . 
N 5 HOH A 101 701 616 HOH HOH . 
N 5 HOH A 102 702 726 HOH HOH . 
N 5 HOH A 103 703 730 HOH HOH . 
N 5 HOH A 104 704 695 HOH HOH . 
N 5 HOH A 105 705 657 HOH HOH . 
N 5 HOH A 106 706 671 HOH HOH . 
N 5 HOH A 107 707 666 HOH HOH . 
N 5 HOH A 108 708 654 HOH HOH . 
N 5 HOH A 109 709 653 HOH HOH . 
N 5 HOH A 110 710 670 HOH HOH . 
N 5 HOH A 111 711 692 HOH HOH . 
N 5 HOH A 112 712 649 HOH HOH . 
N 5 HOH A 113 713 722 HOH HOH . 
N 5 HOH A 114 714 712 HOH HOH . 
N 5 HOH A 115 715 718 HOH HOH . 
N 5 HOH A 116 716 697 HOH HOH . 
N 5 HOH A 117 717 627 HOH HOH . 
N 5 HOH A 118 718 725 HOH HOH . 
N 5 HOH A 119 719 721 HOH HOH . 
N 5 HOH A 120 720 621 HOH HOH . 
N 5 HOH A 121 721 696 HOH HOH . 
N 5 HOH A 122 722 660 HOH HOH . 
N 5 HOH A 123 723 614 HOH HOH . 
N 5 HOH A 124 724 709 HOH HOH . 
N 5 HOH A 125 725 720 HOH HOH . 
N 5 HOH A 126 726 715 HOH HOH . 
N 5 HOH A 127 727 676 HOH HOH . 
N 5 HOH A 128 728 717 HOH HOH . 
N 5 HOH A 129 729 678 HOH HOH . 
N 5 HOH A 130 730 706 HOH HOH . 
N 5 HOH A 131 731 714 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 2 2.669 -1.198 29.879 1 34.6 ? C1 NAG 504 A 1 
HETATM 2 C C2 NAG . . . E 2 3.645 -1.106 31.063 1 35.68 ? C2 NAG 504 A 1 
HETATM 3 C C3 NAG . . . E 2 2.89 -1.077 32.397 1 38.41 ? C3 NAG 504 A 1 
HETATM 4 C C4 NAG . . . E 2 1.782 -0.03 32.38 1 36.8 ? C4 NAG 504 A 1 
HETATM 5 C C5 NAG . . . E 2 0.879 -0.275 31.182 1 35.83 ? C5 NAG 504 A 1 
HETATM 6 C C6 NAG . . . E 2 -0.249 0.726 31.065 1 39.99 ? C6 NAG 504 A 1 
HETATM 7 C C7 NAG . . . E 2 5.876 -2.112 30.792 1 44.59 ? C7 NAG 504 A 1 
HETATM 8 C C8 NAG . . . E 2 6.661 -3.39 30.805 1 34.97 ? C8 NAG 504 A 1 
HETATM 9 N N2 NAG . . . E 2 4.566 -2.23 31.035 1 40.16 ? N2 NAG 504 A 1 
HETATM 10 O O3 NAG . . . E 2 3.817 -0.802 33.441 1 36.05 ? O3 NAG 504 A 1 
HETATM 11 O O4 NAG . . . E 2 1.006 -0.093 33.572 1 37.36 ? O4 NAG 504 A 1 
HETATM 12 O O5 NAG . . . E 2 1.666 -0.173 29.991 1 32.76 ? O5 NAG 504 A 1 
HETATM 13 O O6 NAG . . . E 2 -0.049 1.63 29.987 1 34.56 ? O6 NAG 504 A 1 
HETATM 14 O O7 NAG . . . E 2 6.404 -1.025 30.576 1 47.54 ? O7 NAG 504 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#