data_6ONH # _model_server_result.job_id 1uKRiadd4fainJI_ZumJ3A _model_server_result.datetime_utc '2024-11-01 07:22:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6onh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 6ONH # _exptl.entry_id 6ONH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.808 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N~3~-(4-chloro-3-fluorophenyl)-N~1~-propylpiperidine-1,3-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ONH _cell.length_a 67.1 _cell.length_b 66.83 _cell.length_c 85.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 A SG CYS 33 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 78 A CYS 119 1_555 A SG CYS 91 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 104 A CYS 218 1_555 A SG CYS 133 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 114 A CYS 228 1_555 A SG CYS 125 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 A SG CYS 182 A CYS 296 1_555 A SG CYS 201 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 247 A CYS 378 1_555 A SG CYS 308 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf7 A SG CYS 254 A CYS 385 1_555 A SG CYS 281 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 A SG CYS 264 A CYS 395 1_555 A SG CYS 273 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? covale ? covale1 A ND2 ASN 120 A ASN 234 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 127 A ASN 241 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale3 A ND2 ASN 148 A ASN 262 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 162 A ASN 276 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 A ND2 ASN 175 A ASN 289 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 A ND2 ASN 181 A ASN 295 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 A ND2 ASN 204 A ASN 334 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 A ND2 ASN 225 A ASN 355 1_555 J C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale9 A ND2 ASN 255 A ASN 386 1_555 I C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 A ND2 ASN 311 A ASN 448 1_555 K C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C16 H21 Cl F N3 O2' _chem_comp.formula_weight 341.808 _chem_comp.id MWD _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N~3~-(4-chloro-3-fluorophenyl)-N~1~-propylpiperidine-1,3-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C16 MWD sing 270 n n C18 C16 MWD doub 271 n y C18 C19 MWD sing 272 n y C16 C14 MWD sing 273 n y C19 C12 MWD doub 274 n y F15 C14 MWD sing 275 n n C14 C13 MWD doub 276 n y C12 C13 MWD sing 277 n y C12 N11 MWD sing 278 n n N11 C09 MWD sing 279 n n C09 O10 MWD doub 280 n n C09 C08 MWD sing 281 n n C08 C20 MWD sing 282 n n C08 C07 MWD sing 283 n n C20 C21 MWD sing 284 n n C21 C22 MWD sing 285 n n C07 N06 MWD sing 286 n n C22 N06 MWD sing 287 n n N06 C05 MWD sing 288 n n C05 N04 MWD sing 289 n n C05 O23 MWD doub 290 n n N04 C03 MWD sing 291 n n C03 C02 MWD sing 292 n n C02 C01 MWD sing 293 n n C18 H1 MWD sing 294 n n C19 H2 MWD sing 295 n n C20 H3 MWD sing 296 n n C20 H4 MWD sing 297 n n C21 H5 MWD sing 298 n n C21 H6 MWD sing 299 n n C22 H7 MWD sing 300 n n C22 H8 MWD sing 301 n n C01 H9 MWD sing 302 n n C01 H10 MWD sing 303 n n C01 H11 MWD sing 304 n n C02 H12 MWD sing 305 n n C02 H13 MWD sing 306 n n C03 H14 MWD sing 307 n n C03 H15 MWD sing 308 n n C07 H16 MWD sing 309 n n C07 H17 MWD sing 310 n n C08 H18 MWD sing 311 n n C13 H19 MWD sing 312 n n N04 H20 MWD sing 313 n n N11 H21 MWD sing 314 n n # _atom_sites.entry_id 6ONH _atom_sites.fract_transf_matrix[1][1] 0.014903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 502 NAG NAG . C 2 NAG A 1 502 503 NAG NAG . D 2 NAG A 1 503 504 NAG NAG . E 2 NAG A 1 504 505 NAG NAG . F 2 NAG A 1 505 506 NAG NAG . G 2 NAG A 1 506 507 NAG NAG . H 2 NAG A 1 507 508 NAG NAG . I 2 NAG A 1 508 509 NAG NAG . J 2 NAG A 1 509 510 NAG NAG . K 2 NAG A 1 510 511 NAG NAG . L 3 MWD A 1 511 512 MWD MWD . M 4 EPE A 1 512 513 EPE EPE . N 5 HOH A 1 601 693 HOH HOH . N 5 HOH A 2 602 677 HOH HOH . N 5 HOH A 3 603 716 HOH HOH . N 5 HOH A 4 604 723 HOH HOH . N 5 HOH A 5 605 701 HOH HOH . N 5 HOH A 6 606 698 HOH HOH . N 5 HOH A 7 607 704 HOH HOH . N 5 HOH A 8 608 690 HOH HOH . N 5 HOH A 9 609 705 HOH HOH . N 5 HOH A 10 610 626 HOH HOH . N 5 HOH A 11 611 610 HOH HOH . N 5 HOH A 12 612 611 HOH HOH . N 5 HOH A 13 613 648 HOH HOH . N 5 HOH A 14 614 729 HOH HOH . N 5 HOH A 15 615 659 HOH HOH . N 5 HOH A 16 616 647 HOH HOH . N 5 HOH A 17 617 615 HOH HOH . N 5 HOH A 18 618 691 HOH HOH . N 5 HOH A 19 619 686 HOH HOH . N 5 HOH A 20 620 641 HOH HOH . N 5 HOH A 21 621 632 HOH HOH . N 5 HOH A 22 622 618 HOH HOH . N 5 HOH A 23 623 656 HOH HOH . N 5 HOH A 24 624 711 HOH HOH . N 5 HOH A 25 625 682 HOH HOH . N 5 HOH A 26 626 727 HOH HOH . N 5 HOH A 27 627 661 HOH HOH . N 5 HOH A 28 628 673 HOH HOH . N 5 HOH A 29 629 631 HOH HOH . N 5 HOH A 30 630 665 HOH HOH . N 5 HOH A 31 631 607 HOH HOH . N 5 HOH A 32 632 613 HOH HOH . N 5 HOH A 33 633 662 HOH HOH . N 5 HOH A 34 634 639 HOH HOH . N 5 HOH A 35 635 643 HOH HOH . N 5 HOH A 36 636 702 HOH HOH . N 5 HOH A 37 637 637 HOH HOH . N 5 HOH A 38 638 652 HOH HOH . N 5 HOH A 39 639 674 HOH HOH . N 5 HOH A 40 640 638 HOH HOH . N 5 HOH A 41 641 669 HOH HOH . N 5 HOH A 42 642 663 HOH HOH . N 5 HOH A 43 643 601 HOH HOH . N 5 HOH A 44 644 710 HOH HOH . N 5 HOH A 45 645 636 HOH HOH . N 5 HOH A 46 646 602 HOH HOH . N 5 HOH A 47 647 700 HOH HOH . N 5 HOH A 48 648 619 HOH HOH . N 5 HOH A 49 649 609 HOH HOH . N 5 HOH A 50 650 689 HOH HOH . N 5 HOH A 51 651 635 HOH HOH . N 5 HOH A 52 652 680 HOH HOH . N 5 HOH A 53 653 683 HOH HOH . N 5 HOH A 54 654 664 HOH HOH . N 5 HOH A 55 655 719 HOH HOH . N 5 HOH A 56 656 623 HOH HOH . N 5 HOH A 57 657 684 HOH HOH . N 5 HOH A 58 658 624 HOH HOH . N 5 HOH A 59 659 681 HOH HOH . N 5 HOH A 60 660 644 HOH HOH . N 5 HOH A 61 661 688 HOH HOH . N 5 HOH A 62 662 724 HOH HOH . N 5 HOH A 63 663 645 HOH HOH . N 5 HOH A 64 664 628 HOH HOH . N 5 HOH A 65 665 605 HOH HOH . N 5 HOH A 66 666 629 HOH HOH . N 5 HOH A 67 667 612 HOH HOH . N 5 HOH A 68 668 617 HOH HOH . N 5 HOH A 69 669 679 HOH HOH . N 5 HOH A 70 670 633 HOH HOH . N 5 HOH A 71 671 668 HOH HOH . N 5 HOH A 72 672 630 HOH HOH . N 5 HOH A 73 673 650 HOH HOH . N 5 HOH A 74 674 634 HOH HOH . N 5 HOH A 75 675 728 HOH HOH . N 5 HOH A 76 676 685 HOH HOH . N 5 HOH A 77 677 731 HOH HOH . N 5 HOH A 78 678 651 HOH HOH . N 5 HOH A 79 679 622 HOH HOH . N 5 HOH A 80 680 675 HOH HOH . N 5 HOH A 81 681 620 HOH HOH . N 5 HOH A 82 682 694 HOH HOH . N 5 HOH A 83 683 606 HOH HOH . N 5 HOH A 84 684 640 HOH HOH . N 5 HOH A 85 685 672 HOH HOH . N 5 HOH A 86 686 604 HOH HOH . N 5 HOH A 87 687 625 HOH HOH . N 5 HOH A 88 688 603 HOH HOH . N 5 HOH A 89 689 707 HOH HOH . N 5 HOH A 90 690 708 HOH HOH . N 5 HOH A 91 691 699 HOH HOH . N 5 HOH A 92 692 608 HOH HOH . N 5 HOH A 93 693 687 HOH HOH . N 5 HOH A 94 694 642 HOH HOH . N 5 HOH A 95 695 646 HOH HOH . N 5 HOH A 96 696 655 HOH HOH . N 5 HOH A 97 697 703 HOH HOH . N 5 HOH A 98 698 667 HOH HOH . N 5 HOH A 99 699 713 HOH HOH . N 5 HOH A 100 700 658 HOH HOH . N 5 HOH A 101 701 616 HOH HOH . N 5 HOH A 102 702 726 HOH HOH . N 5 HOH A 103 703 730 HOH HOH . N 5 HOH A 104 704 695 HOH HOH . N 5 HOH A 105 705 657 HOH HOH . N 5 HOH A 106 706 671 HOH HOH . N 5 HOH A 107 707 666 HOH HOH . N 5 HOH A 108 708 654 HOH HOH . N 5 HOH A 109 709 653 HOH HOH . N 5 HOH A 110 710 670 HOH HOH . N 5 HOH A 111 711 692 HOH HOH . N 5 HOH A 112 712 649 HOH HOH . N 5 HOH A 113 713 722 HOH HOH . N 5 HOH A 114 714 712 HOH HOH . N 5 HOH A 115 715 718 HOH HOH . N 5 HOH A 116 716 697 HOH HOH . N 5 HOH A 117 717 627 HOH HOH . N 5 HOH A 118 718 725 HOH HOH . N 5 HOH A 119 719 721 HOH HOH . N 5 HOH A 120 720 621 HOH HOH . N 5 HOH A 121 721 696 HOH HOH . N 5 HOH A 122 722 660 HOH HOH . N 5 HOH A 123 723 614 HOH HOH . N 5 HOH A 124 724 709 HOH HOH . N 5 HOH A 125 725 720 HOH HOH . N 5 HOH A 126 726 715 HOH HOH . N 5 HOH A 127 727 676 HOH HOH . N 5 HOH A 128 728 717 HOH HOH . N 5 HOH A 129 729 678 HOH HOH . N 5 HOH A 130 730 706 HOH HOH . N 5 HOH A 131 731 714 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 MWD . . . L 3 0.39 11.517 8.063 1 31.01 ? O10 MWD 511 A 1 HETATM 2 C C18 MWD . . . L 3 1.556 12.211 2.907 1 22.72 ? C18 MWD 511 A 1 HETATM 3 C C19 MWD . . . L 3 1.284 12.922 4.067 1 22.71 ? C19 MWD 511 A 1 HETATM 4 C C20 MWD . . . L 3 -1.05 14.332 9.096 1 33.78 ? C20 MWD 511 A 1 HETATM 5 C C21 MWD . . . L 3 -1.035 15.471 10.053 1 37.4 ? C21 MWD 511 A 1 HETATM 6 C C22 MWD . . . L 3 0.12 15.302 11.073 1 33.5 ? C22 MWD 511 A 1 HETATM 7 C C01 MWD . . . L 3 0.263 9.167 15.624 1 52.11 ? C01 MWD 511 A 1 HETATM 8 C C02 MWD . . . L 3 0.805 10.123 14.557 1 51 ? C02 MWD 511 A 1 HETATM 9 C C03 MWD . . . L 3 -0.14 11.272 14.227 1 44.88 ? C03 MWD 511 A 1 HETATM 10 C C05 MWD . . . L 3 -0.001 13.281 12.717 1 37.2 ? C05 MWD 511 A 1 HETATM 11 C C07 MWD . . . L 3 0.854 13.087 10.236 1 34.23 ? C07 MWD 511 A 1 HETATM 12 C C08 MWD . . . L 3 0.313 13.741 8.936 1 30.08 ? C08 MWD 511 A 1 HETATM 13 C C09 MWD . . . L 3 0.464 12.665 7.787 1 27.75 ? C09 MWD 511 A 1 HETATM 14 C C12 MWD . . . L 3 0.957 12.268 5.254 1 26.75 ? C12 MWD 511 A 1 HETATM 15 C C13 MWD . . . L 3 0.933 10.878 5.271 1 24.06 ? C13 MWD 511 A 1 HETATM 16 C C14 MWD . . . L 3 1.206 10.165 4.102 1 22.44 ? C14 MWD 511 A 1 HETATM 17 C C16 MWD . . . L 3 1.513 10.831 2.931 1 21.71 ? C16 MWD 511 A 1 HETATM 18 F F15 MWD . . . L 3 1.171 8.801 4.093 1 25.07 ? F15 MWD 511 A 1 HETATM 19 N N04 MWD . . . L 3 0.197 11.862 12.946 1 42.28 ? N04 MWD 511 A 1 HETATM 20 N N06 MWD . . . L 3 0.327 13.852 11.42 1 39.55 ? N06 MWD 511 A 1 HETATM 21 N N11 MWD . . . L 3 0.723 13.106 6.427 1 24.01 ? N11 MWD 511 A 1 HETATM 22 O O23 MWD . . . L 3 -0.422 13.971 13.581 1 41.28 ? O23 MWD 511 A 1 HETATM 23 CL CL1 MWD . . . L 3 1.855 9.887 1.455 1 35.34 ? CL1 MWD 511 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #