data_6ONK # _model_server_result.job_id 8Q1vMO7ASrP7ewD3hnRwQg _model_server_result.datetime_utc '2024-11-23 07:44:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6onk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 6ONK # _exptl.entry_id 6ONK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ONK _cell.length_a 59.234 _cell.length_b 68.025 _cell.length_c 66.761 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 J FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 J FE HEM . B HEM 201 1_555 Q O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6ONK _atom_sites.fract_transf_matrix[1][1] 0.016882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 MZG A 1 202 201 MZG 4CC . E 4 EDO A 1 203 301 EDO EDO . F 4 EDO A 1 204 401 EDO EDO . G 4 EDO A 1 205 501 EDO EDO . H 5 SO4 A 1 206 1 SO4 SO4 . I 5 SO4 A 1 207 2 SO4 SO4 . J 2 HEM B 1 201 139 HEM HEM . K 3 MZG B 1 202 201 MZG 4CC . L 4 EDO B 1 203 301 EDO EDO . M 4 EDO B 1 204 401 EDO EDO . N 4 EDO B 1 205 501 EDO EDO . O 4 EDO B 1 206 601 EDO EDO . P 6 HOH A 1 301 239 HOH HOH . P 6 HOH A 2 302 195 HOH HOH . P 6 HOH A 3 303 4 HOH HOH . P 6 HOH A 4 304 188 HOH HOH . P 6 HOH A 5 305 185 HOH HOH . P 6 HOH A 6 306 111 HOH HOH . P 6 HOH A 7 307 197 HOH HOH . P 6 HOH A 8 308 264 HOH HOH . P 6 HOH A 9 309 196 HOH HOH . P 6 HOH A 10 310 237 HOH HOH . P 6 HOH A 11 311 189 HOH HOH . P 6 HOH A 12 312 241 HOH HOH . P 6 HOH A 13 313 201 HOH HOH . P 6 HOH A 14 314 95 HOH HOH . P 6 HOH A 15 315 232 HOH HOH . P 6 HOH A 16 316 110 HOH HOH . P 6 HOH A 17 317 177 HOH HOH . P 6 HOH A 18 318 35 HOH HOH . P 6 HOH A 19 319 236 HOH HOH . P 6 HOH A 20 320 44 HOH HOH . P 6 HOH A 21 321 229 HOH HOH . P 6 HOH A 22 322 191 HOH HOH . P 6 HOH A 23 323 160 HOH HOH . P 6 HOH A 24 324 94 HOH HOH . P 6 HOH A 25 325 273 HOH HOH . P 6 HOH A 26 326 135 HOH HOH . P 6 HOH A 27 327 279 HOH HOH . P 6 HOH A 28 328 137 HOH HOH . P 6 HOH A 29 329 171 HOH HOH . P 6 HOH A 30 330 146 HOH HOH . P 6 HOH A 31 331 254 HOH HOH . P 6 HOH A 32 332 70 HOH HOH . P 6 HOH A 33 333 30 HOH HOH . P 6 HOH A 34 334 114 HOH HOH . P 6 HOH A 35 335 102 HOH HOH . P 6 HOH A 36 336 61 HOH HOH . P 6 HOH A 37 337 203 HOH HOH . P 6 HOH A 38 338 52 HOH HOH . P 6 HOH A 39 339 145 HOH HOH . P 6 HOH A 40 340 100 HOH HOH . P 6 HOH A 41 341 73 HOH HOH . P 6 HOH A 42 342 46 HOH HOH . P 6 HOH A 43 343 6 HOH HOH . P 6 HOH A 44 344 23 HOH HOH . P 6 HOH A 45 345 18 HOH HOH . P 6 HOH A 46 346 29 HOH HOH . P 6 HOH A 47 347 16 HOH HOH . P 6 HOH A 48 348 109 HOH HOH . P 6 HOH A 49 349 28 HOH HOH . P 6 HOH A 50 350 174 HOH HOH . P 6 HOH A 51 351 244 HOH HOH . P 6 HOH A 52 352 54 HOH HOH . P 6 HOH A 53 353 26 HOH HOH . P 6 HOH A 54 354 106 HOH HOH . P 6 HOH A 55 355 50 HOH HOH . P 6 HOH A 56 356 3 HOH HOH . P 6 HOH A 57 357 167 HOH HOH . P 6 HOH A 58 358 139 HOH HOH . P 6 HOH A 59 359 39 HOH HOH . P 6 HOH A 60 360 89 HOH HOH . P 6 HOH A 61 361 127 HOH HOH . P 6 HOH A 62 362 55 HOH HOH . P 6 HOH A 63 363 36 HOH HOH . P 6 HOH A 64 364 147 HOH HOH . P 6 HOH A 65 365 144 HOH HOH . P 6 HOH A 66 366 262 HOH HOH . P 6 HOH A 67 367 186 HOH HOH . P 6 HOH A 68 368 105 HOH HOH . P 6 HOH A 69 369 120 HOH HOH . P 6 HOH A 70 370 71 HOH HOH . P 6 HOH A 71 371 66 HOH HOH . P 6 HOH A 72 372 194 HOH HOH . P 6 HOH A 73 373 190 HOH HOH . P 6 HOH A 74 374 122 HOH HOH . P 6 HOH A 75 375 87 HOH HOH . P 6 HOH A 76 376 258 HOH HOH . P 6 HOH A 77 377 125 HOH HOH . P 6 HOH A 78 378 22 HOH HOH . P 6 HOH A 79 379 124 HOH HOH . P 6 HOH A 80 380 96 HOH HOH . P 6 HOH A 81 381 156 HOH HOH . P 6 HOH A 82 382 132 HOH HOH . P 6 HOH A 83 383 58 HOH HOH . P 6 HOH A 84 384 121 HOH HOH . P 6 HOH A 85 385 84 HOH HOH . P 6 HOH A 86 386 68 HOH HOH . P 6 HOH A 87 387 238 HOH HOH . P 6 HOH A 88 388 205 HOH HOH . P 6 HOH A 89 389 275 HOH HOH . P 6 HOH A 90 390 230 HOH HOH . P 6 HOH A 91 391 204 HOH HOH . P 6 HOH A 92 392 99 HOH HOH . P 6 HOH A 93 393 1 HOH HOH . P 6 HOH A 94 394 37 HOH HOH . P 6 HOH A 95 395 130 HOH HOH . P 6 HOH A 96 396 240 HOH HOH . P 6 HOH A 97 397 158 HOH HOH . P 6 HOH A 98 398 243 HOH HOH . P 6 HOH A 99 399 108 HOH HOH . P 6 HOH A 100 400 5 HOH HOH . P 6 HOH A 101 401 198 HOH HOH . P 6 HOH A 102 402 202 HOH HOH . P 6 HOH A 103 403 163 HOH HOH . P 6 HOH A 104 404 178 HOH HOH . P 6 HOH A 105 405 228 HOH HOH . P 6 HOH A 106 406 7 HOH HOH . P 6 HOH A 107 407 259 HOH HOH . P 6 HOH A 108 408 200 HOH HOH . P 6 HOH A 109 409 152 HOH HOH . P 6 HOH A 110 410 263 HOH HOH . P 6 HOH A 111 411 199 HOH HOH . P 6 HOH A 112 412 149 HOH HOH . P 6 HOH A 113 413 270 HOH HOH . P 6 HOH A 114 414 62 HOH HOH . Q 6 HOH B 1 301 261 HOH HOH . Q 6 HOH B 2 302 235 HOH HOH . Q 6 HOH B 3 303 234 HOH HOH . Q 6 HOH B 4 304 208 HOH HOH . Q 6 HOH B 5 305 268 HOH HOH . Q 6 HOH B 6 306 81 HOH HOH . Q 6 HOH B 7 307 43 HOH HOH . Q 6 HOH B 8 308 231 HOH HOH . Q 6 HOH B 9 309 8 HOH HOH . Q 6 HOH B 10 310 284 HOH HOH . Q 6 HOH B 11 311 217 HOH HOH . Q 6 HOH B 12 312 172 HOH HOH . Q 6 HOH B 13 313 193 HOH HOH . Q 6 HOH B 14 314 115 HOH HOH . Q 6 HOH B 15 315 211 HOH HOH . Q 6 HOH B 16 316 97 HOH HOH . Q 6 HOH B 17 317 218 HOH HOH . Q 6 HOH B 18 318 225 HOH HOH . Q 6 HOH B 19 319 10 HOH HOH . Q 6 HOH B 20 320 75 HOH HOH . Q 6 HOH B 21 321 138 HOH HOH . Q 6 HOH B 22 322 131 HOH HOH . Q 6 HOH B 23 323 162 HOH HOH . Q 6 HOH B 24 324 179 HOH HOH . Q 6 HOH B 25 325 65 HOH HOH . Q 6 HOH B 26 326 223 HOH HOH . Q 6 HOH B 27 327 220 HOH HOH . Q 6 HOH B 28 328 187 HOH HOH . Q 6 HOH B 29 329 267 HOH HOH . Q 6 HOH B 30 330 45 HOH HOH . Q 6 HOH B 31 331 165 HOH HOH . Q 6 HOH B 32 332 213 HOH HOH . Q 6 HOH B 33 333 98 HOH HOH . Q 6 HOH B 34 334 15 HOH HOH . Q 6 HOH B 35 335 248 HOH HOH . Q 6 HOH B 36 336 192 HOH HOH . Q 6 HOH B 37 337 88 HOH HOH . Q 6 HOH B 38 338 12 HOH HOH . Q 6 HOH B 39 339 173 HOH HOH . Q 6 HOH B 40 340 253 HOH HOH . Q 6 HOH B 41 341 142 HOH HOH . Q 6 HOH B 42 342 56 HOH HOH . Q 6 HOH B 43 343 119 HOH HOH . Q 6 HOH B 44 344 104 HOH HOH . Q 6 HOH B 45 345 83 HOH HOH . Q 6 HOH B 46 346 129 HOH HOH . Q 6 HOH B 47 347 210 HOH HOH . Q 6 HOH B 48 348 27 HOH HOH . Q 6 HOH B 49 349 126 HOH HOH . Q 6 HOH B 50 350 245 HOH HOH . Q 6 HOH B 51 351 136 HOH HOH . Q 6 HOH B 52 352 21 HOH HOH . Q 6 HOH B 53 353 224 HOH HOH . Q 6 HOH B 54 354 74 HOH HOH . Q 6 HOH B 55 355 233 HOH HOH . Q 6 HOH B 56 356 67 HOH HOH . Q 6 HOH B 57 357 153 HOH HOH . Q 6 HOH B 58 358 251 HOH HOH . Q 6 HOH B 59 359 14 HOH HOH . Q 6 HOH B 60 360 25 HOH HOH . Q 6 HOH B 61 361 34 HOH HOH . Q 6 HOH B 62 362 252 HOH HOH . Q 6 HOH B 63 363 128 HOH HOH . Q 6 HOH B 64 364 86 HOH HOH . Q 6 HOH B 65 365 78 HOH HOH . Q 6 HOH B 66 366 80 HOH HOH . Q 6 HOH B 67 367 101 HOH HOH . Q 6 HOH B 68 368 51 HOH HOH . Q 6 HOH B 69 369 118 HOH HOH . Q 6 HOH B 70 370 103 HOH HOH . Q 6 HOH B 71 371 113 HOH HOH . Q 6 HOH B 72 372 272 HOH HOH . Q 6 HOH B 73 373 31 HOH HOH . Q 6 HOH B 74 374 181 HOH HOH . Q 6 HOH B 75 375 42 HOH HOH . Q 6 HOH B 76 376 77 HOH HOH . Q 6 HOH B 77 377 157 HOH HOH . Q 6 HOH B 78 378 226 HOH HOH . Q 6 HOH B 79 379 249 HOH HOH . Q 6 HOH B 80 380 41 HOH HOH . Q 6 HOH B 81 381 79 HOH HOH . Q 6 HOH B 82 382 17 HOH HOH . Q 6 HOH B 83 383 256 HOH HOH . Q 6 HOH B 84 384 38 HOH HOH . Q 6 HOH B 85 385 9 HOH HOH . Q 6 HOH B 86 386 53 HOH HOH . Q 6 HOH B 87 387 63 HOH HOH . Q 6 HOH B 88 388 247 HOH HOH . Q 6 HOH B 89 389 154 HOH HOH . Q 6 HOH B 90 390 143 HOH HOH . Q 6 HOH B 91 391 72 HOH HOH . Q 6 HOH B 92 392 59 HOH HOH . Q 6 HOH B 93 393 222 HOH HOH . Q 6 HOH B 94 394 11 HOH HOH . Q 6 HOH B 95 395 216 HOH HOH . Q 6 HOH B 96 396 91 HOH HOH . Q 6 HOH B 97 397 47 HOH HOH . Q 6 HOH B 98 398 182 HOH HOH . Q 6 HOH B 99 399 215 HOH HOH . Q 6 HOH B 100 400 60 HOH HOH . Q 6 HOH B 101 401 168 HOH HOH . Q 6 HOH B 102 402 92 HOH HOH . Q 6 HOH B 103 403 212 HOH HOH . Q 6 HOH B 104 404 170 HOH HOH . Q 6 HOH B 105 405 116 HOH HOH . Q 6 HOH B 106 406 19 HOH HOH . Q 6 HOH B 107 407 133 HOH HOH . Q 6 HOH B 108 408 107 HOH HOH . Q 6 HOH B 109 409 209 HOH HOH . Q 6 HOH B 110 410 227 HOH HOH . Q 6 HOH B 111 411 93 HOH HOH . Q 6 HOH B 112 412 13 HOH HOH . Q 6 HOH B 113 413 281 HOH HOH . Q 6 HOH B 114 414 20 HOH HOH . Q 6 HOH B 115 415 206 HOH HOH . Q 6 HOH B 116 416 123 HOH HOH . Q 6 HOH B 117 417 246 HOH HOH . Q 6 HOH B 118 418 155 HOH HOH . Q 6 HOH B 119 419 159 HOH HOH . Q 6 HOH B 120 420 48 HOH HOH . Q 6 HOH B 121 421 33 HOH HOH . Q 6 HOH B 122 422 140 HOH HOH . Q 6 HOH B 123 423 280 HOH HOH . Q 6 HOH B 124 424 266 HOH HOH . Q 6 HOH B 125 425 221 HOH HOH . Q 6 HOH B 126 426 141 HOH HOH . Q 6 HOH B 127 427 76 HOH HOH . Q 6 HOH B 128 428 151 HOH HOH . Q 6 HOH B 129 429 274 HOH HOH . Q 6 HOH B 130 430 207 HOH HOH . Q 6 HOH B 131 431 278 HOH HOH . Q 6 HOH B 132 432 169 HOH HOH . Q 6 HOH B 133 433 257 HOH HOH . Q 6 HOH B 134 434 24 HOH HOH . Q 6 HOH B 135 435 285 HOH HOH . Q 6 HOH B 136 436 250 HOH HOH . Q 6 HOH B 137 437 183 HOH HOH . Q 6 HOH B 138 438 282 HOH HOH . Q 6 HOH B 139 439 214 HOH HOH . Q 6 HOH B 140 440 283 HOH HOH . Q 6 HOH B 141 441 277 HOH HOH . Q 6 HOH B 142 442 260 HOH HOH . Q 6 HOH B 143 443 276 HOH HOH . Q 6 HOH B 144 444 57 HOH HOH . Q 6 HOH B 145 445 85 HOH HOH . Q 6 HOH B 146 446 117 HOH HOH . Q 6 HOH B 147 447 184 HOH HOH . Q 6 HOH B 148 448 269 HOH HOH . Q 6 HOH B 149 449 271 HOH HOH . Q 6 HOH B 150 450 150 HOH HOH . Q 6 HOH B 151 451 265 HOH HOH . Q 6 HOH B 152 452 166 HOH HOH . Q 6 HOH B 153 453 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -7.754 11.979 37.051 1 30.14 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . G 4 -6.744 12.672 36.387 1 32.22 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . G 4 -8.796 11.481 36.153 1 27.34 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . G 4 -8.356 10.443 35.247 1 20.64 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #