data_6ONS # _model_server_result.job_id H9WY8Q0sDO0LvwzdlR7MKg _model_server_result.datetime_utc '2024-10-19 15:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ons # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6ONS # _exptl.entry_id 6ONS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.75 _cell.angle_gamma 90 _cell.entry_id 6ONS _cell.length_a 110.544 _cell.length_b 100.609 _cell.length_c 65.343 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 59 A CYS 51 1_555 B FE1 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 A SG CYS 62 A CYS 54 1_555 B FE4 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A SG CYS 67 A CYS 59 1_555 B FE2 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A SG CYS 82 A CYS 74 1_555 B FE3 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 A NE2 HIS 274 A HIS 266 1_555 C FE2 XCC . A XCC 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 A SG CYS 310 A CYS 302 1_555 C FE2 XCC . A XCC 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc7 A SG CYS 348 A CYS 340 1_555 C FE1 XCC . A XCC 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc8 A SG CYS 456 A CYS 448 1_555 C FE3 XCC . A XCC 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc9 A SG CYS 486 A CYS 478 1_555 C FE4 XCC . A XCC 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc10 C FE2 XCC . A XCC 702 1_555 D O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 6ONS _atom_sites.fract_transf_matrix[1][1] 0.009046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006275 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 701 700 SF4 SF4 . C 3 XCC A 1 702 800 XCC XCC . D 4 HOH A 1 801 7 HOH HOH . D 4 HOH A 2 802 75 HOH HOH . D 4 HOH A 3 803 39 HOH HOH . D 4 HOH A 4 804 60 HOH HOH . D 4 HOH A 5 805 40 HOH HOH . D 4 HOH A 6 806 9 HOH HOH . D 4 HOH A 7 807 70 HOH HOH . D 4 HOH A 8 808 88 HOH HOH . D 4 HOH A 9 809 12 HOH HOH . D 4 HOH A 10 810 3 HOH HOH . D 4 HOH A 11 811 2 HOH HOH . D 4 HOH A 12 812 8 HOH HOH . D 4 HOH A 13 813 24 HOH HOH . D 4 HOH A 14 814 1 HOH HOH . D 4 HOH A 15 815 16 HOH HOH . D 4 HOH A 16 816 4 HOH HOH . D 4 HOH A 17 817 51 HOH HOH . D 4 HOH A 18 818 83 HOH HOH . D 4 HOH A 19 819 65 HOH HOH . D 4 HOH A 20 820 61 HOH HOH . D 4 HOH A 21 821 50 HOH HOH . D 4 HOH A 22 822 78 HOH HOH . D 4 HOH A 23 823 87 HOH HOH . D 4 HOH A 24 824 6 HOH HOH . D 4 HOH A 25 825 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 -8.506 18.858 -4.531 1 44.68 ? FE1 SF4 701 A 1 HETATM 2 FE FE2 SF4 . . . B 2 -9.291 21.004 -6.017 1 45.9 ? FE2 SF4 701 A 1 HETATM 3 FE FE3 SF4 . . . B 2 -10.932 18.824 -5.809 1 44 ? FE3 SF4 701 A 1 HETATM 4 FE FE4 SF4 . . . B 2 -8.627 18.647 -7.258 1 44.78 ? FE4 SF4 701 A 1 HETATM 5 S S1 SF4 . . . B 2 -10.43 19.968 -7.705 1 35.56 ? S1 SF4 701 A 1 HETATM 6 S S2 SF4 . . . B 2 -9.393 17.131 -5.738 1 32.65 ? S2 SF4 701 A 1 HETATM 7 S S3 SF4 . . . B 2 -7.237 20 -6.04 1 34.77 ? S3 SF4 701 A 1 HETATM 8 S S4 SF4 . . . B 2 -10.286 20.226 -4.124 1 36.43 ? S4 SF4 701 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #