data_6ONV # _model_server_result.job_id -8HerUo_MubcGsjxovzNhw _model_server_result.datetime_utc '2024-10-17 22:04:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6onv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 6ONV # _exptl.entry_id 6ONV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.794 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N-(4-chloro-3-fluorophenyl)-1-(methylsulfonyl)piperidine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ONV _cell.length_a 66.256 _cell.length_b 67.208 _cell.length_c 86.449 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 A SG CYS 33 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 78 A CYS 119 1_555 A SG CYS 91 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 104 A CYS 218 1_555 A SG CYS 133 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 114 A CYS 228 1_555 A SG CYS 125 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 182 A CYS 296 1_555 A SG CYS 201 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 247 A CYS 378 1_555 A SG CYS 308 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 254 A CYS 385 1_555 A SG CYS 281 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 264 A CYS 395 1_555 A SG CYS 273 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A ND2 ASN 120 A ASN 234 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 127 A ASN 241 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 148 A ASN 262 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 A ND2 ASN 162 A ASN 276 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 175 A ASN 289 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 A ND2 ASN 181 A ASN 295 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 A ND2 ASN 204 A ASN 334 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale8 A ND2 ASN 225 A ASN 355 1_555 J C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale9 A ND2 ASN 255 A ASN 386 1_555 I C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 A ND2 ASN 311 A ASN 448 1_555 K C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C13 H16 Cl F N2 O3 S' _chem_comp.formula_weight 334.794 _chem_comp.id MWA _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N-(4-chloro-3-fluorophenyl)-1-(methylsulfonyl)piperidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C15 MWA sing 268 n n C15 C17 MWA doub 269 n y C15 C13 MWA sing 270 n y C17 C18 MWA sing 271 n y F14 C13 MWA sing 272 n n C13 C12 MWA doub 273 n y C18 C11 MWA doub 274 n y C12 C11 MWA sing 275 n y C11 N10 MWA sing 276 n n N10 C08 MWA sing 277 n n C08 O09 MWA doub 278 n n C08 C07 MWA sing 279 n n C07 C19 MWA sing 280 n n C07 C06 MWA sing 281 n n C19 C20 MWA sing 282 n n C20 C21 MWA sing 283 n n C06 N05 MWA sing 284 n n C21 N05 MWA sing 285 n n N05 S01 MWA sing 286 n n O03 S01 MWA doub 287 n n S01 C02 MWA sing 288 n n S01 O04 MWA doub 289 n n C17 H1 MWA sing 290 n n C18 H2 MWA sing 291 n n C20 H3 MWA sing 292 n n C20 H4 MWA sing 293 n n C21 H5 MWA sing 294 n n C21 H6 MWA sing 295 n n C02 H7 MWA sing 296 n n C02 H8 MWA sing 297 n n C02 H9 MWA sing 298 n n C06 H10 MWA sing 299 n n C06 H11 MWA sing 300 n n C07 H12 MWA sing 301 n n C12 H13 MWA sing 302 n n C19 H14 MWA sing 303 n n C19 H15 MWA sing 304 n n N10 H16 MWA sing 305 n n # _atom_sites.entry_id 6ONV _atom_sites.fract_transf_matrix[1][1] 0.015093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 501 NAG NAG . C 2 NAG A 1 502 502 NAG NAG . D 2 NAG A 1 503 503 NAG NAG . E 2 NAG A 1 504 504 NAG NAG . F 2 NAG A 1 505 505 NAG NAG . G 2 NAG A 1 506 506 NAG NAG . H 2 NAG A 1 507 507 NAG NAG . I 2 NAG A 1 508 508 NAG NAG . J 2 NAG A 1 509 509 NAG NAG . K 2 NAG A 1 510 510 NAG NAG . L 3 MWA A 1 511 511 MWA MWA . M 4 EPE A 1 512 512 EPE EPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 MWA . . . L 3 -4.195 15.97 -15.996 1 74.94 ? C11 MWA 511 A 1 HETATM 2 C C13 MWA . . . L 3 -6.224 15.84 -17.201 1 78.82 ? C13 MWA 511 A 1 HETATM 3 C C15 MWA . . . L 3 -5.474 15.621 -18.389 1 81.84 ? C15 MWA 511 A 1 HETATM 4 C C17 MWA . . . L 3 -4.077 15.579 -18.38 1 69.59 ? C17 MWA 511 A 1 HETATM 5 C C18 MWA . . . L 3 -3.466 15.756 -17.167 1 73.89 ? C18 MWA 511 A 1 HETATM 6 C C20 MWA . . . L 3 -1.458 18.102 -11.237 1 96.04 ? C20 MWA 511 A 1 HETATM 7 C C21 MWA . . . L 3 -1.238 16.86 -10.345 1 98.44 ? C21 MWA 511 A 1 HETATM 8 C C02 MWA . . . L 3 -0.58 14.892 -8.839 1 111.19 ? C02 MWA 511 A 1 HETATM 9 C C06 MWA . . . L 3 -3.356 15.898 -10.918 1 93.2 ? C06 MWA 511 A 1 HETATM 10 C C07 MWA . . . L 3 -2.88 16.482 -12.264 1 83.47 ? C07 MWA 511 A 1 HETATM 11 C C08 MWA . . . L 3 -3.986 16.381 -13.412 1 74.88 ? C08 MWA 511 A 1 HETATM 12 C C12 MWA . . . L 3 -5.575 16.012 -16.006 1 71.78 ? C12 MWA 511 A 1 HETATM 13 C C19 MWA . . . L 3 -2.548 17.856 -12.161 1 88.81 ? C19 MWA 511 A 1 HETATM 14 F F14 MWA . . . L 3 -7.594 15.888 -17.215 1 80.36 ? F14 MWA 511 A 1 HETATM 15 N N05 MWA . . . L 3 -2.482 16.36 -9.938 1 99.34 ? N05 MWA 511 A 1 HETATM 16 N N10 MWA . . . L 3 -3.446 16.164 -14.75 1 78.03 ? N10 MWA 511 A 1 HETATM 17 O O03 MWA . . . L 3 -3.418 14.297 -8.968 1 117.48 ? O03 MWA 511 A 1 HETATM 18 O O04 MWA . . . L 3 -2.548 16.605 -7.648 1 113.84 ? O04 MWA 511 A 1 HETATM 19 O O09 MWA . . . L 3 -5.147 16.521 -13.152 1 76.73 ? O09 MWA 511 A 1 HETATM 20 S S01 MWA . . . L 3 -2.308 15.525 -8.876 1 139.16 ? S01 MWA 511 A 1 HETATM 21 CL CL1 MWA . . . L 3 -6.356 15.372 -19.972 1 117.53 ? CL1 MWA 511 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #