data_6ONX # _model_server_result.job_id pFx9FdjmZO3w00yNjHtB5w _model_server_result.datetime_utc '2024-10-10 00:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6onx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":208}' # _entry.id 6ONX # _exptl.entry_id 6ONX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ONX _cell.length_a 59.043 _cell.length_b 67.614 _cell.length_c 67.566 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,S 1 1 B,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 N N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 O FE HEM . B HEM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6ONX _atom_sites.fract_transf_matrix[1][1] 0.016937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 MWJ A 1 202 201 MWJ 4BC . E 4 EDO A 1 203 301 EDO EDO . F 4 EDO A 1 204 401 EDO EDO . G 4 EDO A 1 205 501 EDO EDO . H 4 EDO A 1 206 601 EDO EDO . I 4 EDO A 1 207 1201 EDO EDO . J 4 EDO A 1 208 1301 EDO EDO . K 5 PEG A 1 209 1201 PEG PEG . L 6 SO4 A 1 210 1 SO4 SO4 . M 6 SO4 A 1 211 2 SO4 SO4 . N 4 EDO B 1 701 701 EDO EDO . O 2 HEM B 1 702 139 HEM HEM . P 3 MWJ B 1 703 201 MWJ 4BC . Q 4 EDO B 1 704 301 EDO EDO . R 4 EDO B 1 705 501 EDO EDO . S 7 HOH A 1 301 216 HOH HOH . S 7 HOH A 2 302 125 HOH HOH . S 7 HOH A 3 303 61 HOH HOH . S 7 HOH A 4 304 234 HOH HOH . S 7 HOH A 5 305 90 HOH HOH . S 7 HOH A 6 306 34 HOH HOH . S 7 HOH A 7 307 113 HOH HOH . S 7 HOH A 8 308 41 HOH HOH . S 7 HOH A 9 309 229 HOH HOH . S 7 HOH A 10 310 51 HOH HOH . S 7 HOH A 11 311 178 HOH HOH . S 7 HOH A 12 312 16 HOH HOH . S 7 HOH A 13 313 111 HOH HOH . S 7 HOH A 14 314 73 HOH HOH . S 7 HOH A 15 315 168 HOH HOH . S 7 HOH A 16 316 130 HOH HOH . S 7 HOH A 17 317 82 HOH HOH . S 7 HOH A 18 318 69 HOH HOH . S 7 HOH A 19 319 127 HOH HOH . S 7 HOH A 20 320 201 HOH HOH . S 7 HOH A 21 321 105 HOH HOH . S 7 HOH A 22 322 226 HOH HOH . S 7 HOH A 23 323 171 HOH HOH . S 7 HOH A 24 324 31 HOH HOH . S 7 HOH A 25 325 128 HOH HOH . S 7 HOH A 26 326 80 HOH HOH . S 7 HOH A 27 327 72 HOH HOH . S 7 HOH A 28 328 67 HOH HOH . S 7 HOH A 29 329 63 HOH HOH . S 7 HOH A 30 330 17 HOH HOH . S 7 HOH A 31 331 149 HOH HOH . S 7 HOH A 32 332 24 HOH HOH . S 7 HOH A 33 333 38 HOH HOH . S 7 HOH A 34 334 206 HOH HOH . S 7 HOH A 35 335 50 HOH HOH . S 7 HOH A 36 336 186 HOH HOH . S 7 HOH A 37 337 211 HOH HOH . S 7 HOH A 38 338 4 HOH HOH . S 7 HOH A 39 339 83 HOH HOH . S 7 HOH A 40 340 9 HOH HOH . S 7 HOH A 41 341 153 HOH HOH . S 7 HOH A 42 342 121 HOH HOH . S 7 HOH A 43 343 84 HOH HOH . S 7 HOH A 44 344 143 HOH HOH . S 7 HOH A 45 345 107 HOH HOH . S 7 HOH A 46 346 91 HOH HOH . S 7 HOH A 47 347 208 HOH HOH . S 7 HOH A 48 348 169 HOH HOH . S 7 HOH A 49 349 166 HOH HOH . S 7 HOH A 50 350 5 HOH HOH . S 7 HOH A 51 351 3 HOH HOH . S 7 HOH A 52 352 10 HOH HOH . S 7 HOH A 53 353 1 HOH HOH . S 7 HOH A 54 354 136 HOH HOH . S 7 HOH A 55 355 44 HOH HOH . S 7 HOH A 56 356 53 HOH HOH . S 7 HOH A 57 357 18 HOH HOH . S 7 HOH A 58 358 45 HOH HOH . S 7 HOH A 59 359 233 HOH HOH . S 7 HOH A 60 360 60 HOH HOH . S 7 HOH A 61 361 74 HOH HOH . S 7 HOH A 62 362 66 HOH HOH . S 7 HOH A 63 363 30 HOH HOH . S 7 HOH A 64 364 184 HOH HOH . S 7 HOH A 65 365 94 HOH HOH . S 7 HOH A 66 366 26 HOH HOH . S 7 HOH A 67 367 224 HOH HOH . S 7 HOH A 68 368 32 HOH HOH . S 7 HOH A 69 369 193 HOH HOH . S 7 HOH A 70 370 79 HOH HOH . S 7 HOH A 71 371 49 HOH HOH . S 7 HOH A 72 372 218 HOH HOH . S 7 HOH A 73 373 36 HOH HOH . S 7 HOH A 74 374 124 HOH HOH . S 7 HOH A 75 375 13 HOH HOH . S 7 HOH A 76 376 106 HOH HOH . S 7 HOH A 77 377 99 HOH HOH . S 7 HOH A 78 378 81 HOH HOH . S 7 HOH A 79 379 179 HOH HOH . S 7 HOH A 80 380 114 HOH HOH . S 7 HOH A 81 381 39 HOH HOH . S 7 HOH A 82 382 77 HOH HOH . S 7 HOH A 83 383 21 HOH HOH . S 7 HOH A 84 384 89 HOH HOH . S 7 HOH A 85 385 22 HOH HOH . S 7 HOH A 86 386 64 HOH HOH . S 7 HOH A 87 387 115 HOH HOH . S 7 HOH A 88 388 238 HOH HOH . S 7 HOH A 89 389 217 HOH HOH . S 7 HOH A 90 390 95 HOH HOH . S 7 HOH A 91 391 148 HOH HOH . S 7 HOH A 92 392 137 HOH HOH . S 7 HOH A 93 393 210 HOH HOH . S 7 HOH A 94 394 192 HOH HOH . S 7 HOH A 95 395 215 HOH HOH . S 7 HOH A 96 396 55 HOH HOH . S 7 HOH A 97 397 164 HOH HOH . S 7 HOH A 98 398 174 HOH HOH . S 7 HOH A 99 399 162 HOH HOH . S 7 HOH A 100 400 212 HOH HOH . S 7 HOH A 101 401 202 HOH HOH . S 7 HOH A 102 402 195 HOH HOH . S 7 HOH A 103 403 159 HOH HOH . T 7 HOH B 1 801 100 HOH HOH . T 7 HOH B 2 802 47 HOH HOH . T 7 HOH B 3 803 222 HOH HOH . T 7 HOH B 4 804 176 HOH HOH . T 7 HOH B 5 805 220 HOH HOH . T 7 HOH B 6 806 119 HOH HOH . T 7 HOH B 7 807 96 HOH HOH . T 7 HOH B 8 808 199 HOH HOH . T 7 HOH B 9 809 62 HOH HOH . T 7 HOH B 10 810 54 HOH HOH . T 7 HOH B 11 811 75 HOH HOH . T 7 HOH B 12 812 194 HOH HOH . T 7 HOH B 13 813 231 HOH HOH . T 7 HOH B 14 814 23 HOH HOH . T 7 HOH B 15 815 140 HOH HOH . T 7 HOH B 16 816 240 HOH HOH . T 7 HOH B 17 817 230 HOH HOH . T 7 HOH B 18 818 207 HOH HOH . T 7 HOH B 19 819 117 HOH HOH . T 7 HOH B 20 820 157 HOH HOH . T 7 HOH B 21 821 46 HOH HOH . T 7 HOH B 22 822 104 HOH HOH . T 7 HOH B 23 823 65 HOH HOH . T 7 HOH B 24 824 11 HOH HOH . T 7 HOH B 25 825 139 HOH HOH . T 7 HOH B 26 826 88 HOH HOH . T 7 HOH B 27 827 203 HOH HOH . T 7 HOH B 28 828 57 HOH HOH . T 7 HOH B 29 829 141 HOH HOH . T 7 HOH B 30 830 42 HOH HOH . T 7 HOH B 31 831 6 HOH HOH . T 7 HOH B 32 832 126 HOH HOH . T 7 HOH B 33 833 87 HOH HOH . T 7 HOH B 34 834 20 HOH HOH . T 7 HOH B 35 835 25 HOH HOH . T 7 HOH B 36 836 132 HOH HOH . T 7 HOH B 37 837 134 HOH HOH . T 7 HOH B 38 838 86 HOH HOH . T 7 HOH B 39 839 97 HOH HOH . T 7 HOH B 40 840 102 HOH HOH . T 7 HOH B 41 841 12 HOH HOH . T 7 HOH B 42 842 228 HOH HOH . T 7 HOH B 43 843 133 HOH HOH . T 7 HOH B 44 844 19 HOH HOH . T 7 HOH B 45 845 40 HOH HOH . T 7 HOH B 46 846 170 HOH HOH . T 7 HOH B 47 847 37 HOH HOH . T 7 HOH B 48 848 85 HOH HOH . T 7 HOH B 49 849 120 HOH HOH . T 7 HOH B 50 850 15 HOH HOH . T 7 HOH B 51 851 68 HOH HOH . T 7 HOH B 52 852 236 HOH HOH . T 7 HOH B 53 853 221 HOH HOH . T 7 HOH B 54 854 150 HOH HOH . T 7 HOH B 55 855 232 HOH HOH . T 7 HOH B 56 856 239 HOH HOH . T 7 HOH B 57 857 8 HOH HOH . T 7 HOH B 58 858 71 HOH HOH . T 7 HOH B 59 859 108 HOH HOH . T 7 HOH B 60 860 144 HOH HOH . T 7 HOH B 61 861 142 HOH HOH . T 7 HOH B 62 862 237 HOH HOH . T 7 HOH B 63 863 151 HOH HOH . T 7 HOH B 64 864 135 HOH HOH . T 7 HOH B 65 865 28 HOH HOH . T 7 HOH B 66 866 235 HOH HOH . T 7 HOH B 67 867 152 HOH HOH . T 7 HOH B 68 868 138 HOH HOH . T 7 HOH B 69 869 35 HOH HOH . T 7 HOH B 70 870 131 HOH HOH . T 7 HOH B 71 871 7 HOH HOH . T 7 HOH B 72 872 112 HOH HOH . T 7 HOH B 73 873 129 HOH HOH . T 7 HOH B 74 874 70 HOH HOH . T 7 HOH B 75 875 175 HOH HOH . T 7 HOH B 76 876 101 HOH HOH . T 7 HOH B 77 877 2 HOH HOH . T 7 HOH B 78 878 110 HOH HOH . T 7 HOH B 79 879 103 HOH HOH . T 7 HOH B 80 880 122 HOH HOH . T 7 HOH B 81 881 223 HOH HOH . T 7 HOH B 82 882 14 HOH HOH . T 7 HOH B 83 883 219 HOH HOH . T 7 HOH B 84 884 33 HOH HOH . T 7 HOH B 85 885 27 HOH HOH . T 7 HOH B 86 886 29 HOH HOH . T 7 HOH B 87 887 92 HOH HOH . T 7 HOH B 88 888 116 HOH HOH . T 7 HOH B 89 889 58 HOH HOH . T 7 HOH B 90 890 214 HOH HOH . T 7 HOH B 91 891 118 HOH HOH . T 7 HOH B 92 892 123 HOH HOH . T 7 HOH B 93 893 190 HOH HOH . T 7 HOH B 94 894 225 HOH HOH . T 7 HOH B 95 895 154 HOH HOH . T 7 HOH B 96 896 182 HOH HOH . T 7 HOH B 97 897 146 HOH HOH . T 7 HOH B 98 898 181 HOH HOH . T 7 HOH B 99 899 185 HOH HOH . T 7 HOH B 100 900 160 HOH HOH . T 7 HOH B 101 901 52 HOH HOH . T 7 HOH B 102 902 43 HOH HOH . T 7 HOH B 103 903 93 HOH HOH . T 7 HOH B 104 904 167 HOH HOH . T 7 HOH B 105 905 147 HOH HOH . T 7 HOH B 106 906 156 HOH HOH . T 7 HOH B 107 907 188 HOH HOH . T 7 HOH B 108 908 205 HOH HOH . T 7 HOH B 109 909 59 HOH HOH . T 7 HOH B 110 910 78 HOH HOH . T 7 HOH B 111 911 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 -1.619 -12.304 14.394 1 35.14 ? C1 EDO 208 A 1 HETATM 2 O O1 EDO . . . J 4 -2.298 -12.465 13.171 1 26.6 ? O1 EDO 208 A 1 HETATM 3 C C2 EDO . . . J 4 -0.173 -12.6 14.343 1 38.78 ? C2 EDO 208 A 1 HETATM 4 O O2 EDO . . . J 4 0.419 -12.178 13.151 1 43.9 ? O2 EDO 208 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #