data_6ONZ # _model_server_result.job_id agW8BYCdCMwX7BJFwRt1cw _model_server_result.datetime_utc '2024-11-23 10:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6onz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 6ONZ # _exptl.entry_id 6ONZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.135 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-4-nitrophenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ONZ _cell.length_a 58.6 _cell.length_b 67.73 _cell.length_c 67.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ONZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,S 1 1 B,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 S O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc3 B NE2 HIS 89 B HIS 89 1_555 M FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 M FE HEM . B HEM 201 1_555 T O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'C7 H7 N O3' _chem_comp.formula_weight 153.135 _chem_comp.id MYJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-4-nitrophenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYJ sing 328 n n O1 N1 MYJ sing 329 n n C7 C2 MYJ doub 330 n y C7 C6 MYJ sing 331 n y C2 C3 MYJ sing 332 n y N1 C6 MYJ sing 333 n n N1 O2 MYJ doub 334 n n C6 C5 MYJ doub 335 n y C3 O3 MYJ sing 336 n n C3 C4 MYJ doub 337 n y C5 C4 MYJ sing 338 n y C1 H1 MYJ sing 339 n n C1 H2 MYJ sing 340 n n C1 H3 MYJ sing 341 n n C4 H4 MYJ sing 342 n n C5 H5 MYJ sing 343 n n C7 H6 MYJ sing 344 n n O3 H7 MYJ sing 345 n n # _atom_sites.entry_id 6ONZ _atom_sites.fract_transf_matrix[1][1] 0.017065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 MYJ A 1 202 201 MYJ 4NC . E 4 EDO A 1 203 301 EDO EDO . F 5 SO4 A 1 204 1 SO4 SO4 . G 5 SO4 A 1 205 2 SO4 SO4 . H 4 EDO A 1 206 1 EDO EDO . I 4 EDO A 1 207 2 EDO EDO . J 4 EDO A 1 208 4 EDO EDO . K 4 EDO A 1 209 5 EDO EDO . L 4 EDO A 1 210 6 EDO EDO . M 2 HEM B 1 201 139 HEM HEM . N 3 MYJ B 1 202 201 MYJ 4NC . O 5 SO4 B 1 203 3 SO4 SO4 . P 4 EDO B 1 204 3 EDO EDO . Q 4 EDO B 1 205 7 EDO EDO . R 4 EDO B 1 206 8 EDO EDO . S 6 HOH A 1 301 168 HOH HOH . S 6 HOH A 2 302 173 HOH HOH . S 6 HOH A 3 303 210 HOH HOH . S 6 HOH A 4 304 38 HOH HOH . S 6 HOH A 5 305 82 HOH HOH . S 6 HOH A 6 306 160 HOH HOH . S 6 HOH A 7 307 92 HOH HOH . S 6 HOH A 8 308 214 HOH HOH . S 6 HOH A 9 309 174 HOH HOH . S 6 HOH A 10 310 64 HOH HOH . S 6 HOH A 11 311 2 HOH HOH . S 6 HOH A 12 312 145 HOH HOH . S 6 HOH A 13 313 55 HOH HOH . S 6 HOH A 14 314 104 HOH HOH . S 6 HOH A 15 315 129 HOH HOH . S 6 HOH A 16 316 61 HOH HOH . S 6 HOH A 17 317 31 HOH HOH . S 6 HOH A 18 318 57 HOH HOH . S 6 HOH A 19 319 51 HOH HOH . S 6 HOH A 20 320 40 HOH HOH . S 6 HOH A 21 321 84 HOH HOH . S 6 HOH A 22 322 11 HOH HOH . S 6 HOH A 23 323 94 HOH HOH . S 6 HOH A 24 324 121 HOH HOH . S 6 HOH A 25 325 185 HOH HOH . S 6 HOH A 26 326 124 HOH HOH . S 6 HOH A 27 327 63 HOH HOH . S 6 HOH A 28 328 49 HOH HOH . S 6 HOH A 29 329 50 HOH HOH . S 6 HOH A 30 330 30 HOH HOH . S 6 HOH A 31 331 21 HOH HOH . S 6 HOH A 32 332 23 HOH HOH . S 6 HOH A 33 333 86 HOH HOH . S 6 HOH A 34 334 6 HOH HOH . S 6 HOH A 35 335 56 HOH HOH . S 6 HOH A 36 336 37 HOH HOH . S 6 HOH A 37 337 141 HOH HOH . S 6 HOH A 38 338 29 HOH HOH . S 6 HOH A 39 339 1 HOH HOH . S 6 HOH A 40 340 19 HOH HOH . S 6 HOH A 41 341 206 HOH HOH . S 6 HOH A 42 342 10 HOH HOH . S 6 HOH A 43 343 151 HOH HOH . S 6 HOH A 44 344 16 HOH HOH . S 6 HOH A 45 345 122 HOH HOH . S 6 HOH A 46 346 155 HOH HOH . S 6 HOH A 47 347 68 HOH HOH . S 6 HOH A 48 348 216 HOH HOH . S 6 HOH A 49 349 18 HOH HOH . S 6 HOH A 50 350 79 HOH HOH . S 6 HOH A 51 351 108 HOH HOH . S 6 HOH A 52 352 48 HOH HOH . S 6 HOH A 53 353 105 HOH HOH . S 6 HOH A 54 354 36 HOH HOH . S 6 HOH A 55 355 98 HOH HOH . S 6 HOH A 56 356 184 HOH HOH . S 6 HOH A 57 357 41 HOH HOH . S 6 HOH A 58 358 25 HOH HOH . S 6 HOH A 59 359 138 HOH HOH . S 6 HOH A 60 360 130 HOH HOH . S 6 HOH A 61 361 91 HOH HOH . S 6 HOH A 62 362 59 HOH HOH . S 6 HOH A 63 363 128 HOH HOH . S 6 HOH A 64 364 35 HOH HOH . S 6 HOH A 65 365 45 HOH HOH . S 6 HOH A 66 366 4 HOH HOH . S 6 HOH A 67 367 208 HOH HOH . S 6 HOH A 68 368 27 HOH HOH . S 6 HOH A 69 369 136 HOH HOH . S 6 HOH A 70 370 170 HOH HOH . S 6 HOH A 71 371 89 HOH HOH . S 6 HOH A 72 372 47 HOH HOH . S 6 HOH A 73 373 78 HOH HOH . S 6 HOH A 74 374 156 HOH HOH . S 6 HOH A 75 375 72 HOH HOH . S 6 HOH A 76 376 132 HOH HOH . S 6 HOH A 77 377 13 HOH HOH . S 6 HOH A 78 378 175 HOH HOH . S 6 HOH A 79 379 211 HOH HOH . S 6 HOH A 80 380 102 HOH HOH . S 6 HOH A 81 381 5 HOH HOH . S 6 HOH A 82 382 202 HOH HOH . S 6 HOH A 83 383 115 HOH HOH . S 6 HOH A 84 384 34 HOH HOH . S 6 HOH A 85 385 152 HOH HOH . S 6 HOH A 86 386 200 HOH HOH . S 6 HOH A 87 387 181 HOH HOH . S 6 HOH A 88 388 193 HOH HOH . S 6 HOH A 89 389 135 HOH HOH . S 6 HOH A 90 390 153 HOH HOH . S 6 HOH A 91 391 199 HOH HOH . S 6 HOH A 92 392 188 HOH HOH . S 6 HOH A 93 393 163 HOH HOH . S 6 HOH A 94 394 177 HOH HOH . S 6 HOH A 95 395 113 HOH HOH . S 6 HOH A 96 396 112 HOH HOH . S 6 HOH A 97 397 187 HOH HOH . S 6 HOH A 98 398 43 HOH HOH . S 6 HOH A 99 399 176 HOH HOH . S 6 HOH A 100 400 158 HOH HOH . S 6 HOH A 101 401 189 HOH HOH . S 6 HOH A 102 402 157 HOH HOH . S 6 HOH A 103 403 197 HOH HOH . T 6 HOH B 1 301 196 HOH HOH . T 6 HOH B 2 302 148 HOH HOH . T 6 HOH B 3 303 140 HOH HOH . T 6 HOH B 4 304 107 HOH HOH . T 6 HOH B 5 305 26 HOH HOH . T 6 HOH B 6 306 71 HOH HOH . T 6 HOH B 7 307 144 HOH HOH . T 6 HOH B 8 308 70 HOH HOH . T 6 HOH B 9 309 215 HOH HOH . T 6 HOH B 10 310 28 HOH HOH . T 6 HOH B 11 311 217 HOH HOH . T 6 HOH B 12 312 66 HOH HOH . T 6 HOH B 13 313 131 HOH HOH . T 6 HOH B 14 314 109 HOH HOH . T 6 HOH B 15 315 60 HOH HOH . T 6 HOH B 16 316 161 HOH HOH . T 6 HOH B 17 317 65 HOH HOH . T 6 HOH B 18 318 159 HOH HOH . T 6 HOH B 19 319 172 HOH HOH . T 6 HOH B 20 320 52 HOH HOH . T 6 HOH B 21 321 39 HOH HOH . T 6 HOH B 22 322 12 HOH HOH . T 6 HOH B 23 323 8 HOH HOH . T 6 HOH B 24 324 33 HOH HOH . T 6 HOH B 25 325 74 HOH HOH . T 6 HOH B 26 326 88 HOH HOH . T 6 HOH B 27 327 143 HOH HOH . T 6 HOH B 28 328 7 HOH HOH . T 6 HOH B 29 329 192 HOH HOH . T 6 HOH B 30 330 103 HOH HOH . T 6 HOH B 31 331 15 HOH HOH . T 6 HOH B 32 332 24 HOH HOH . T 6 HOH B 33 333 198 HOH HOH . T 6 HOH B 34 334 17 HOH HOH . T 6 HOH B 35 335 194 HOH HOH . T 6 HOH B 36 336 69 HOH HOH . T 6 HOH B 37 337 62 HOH HOH . T 6 HOH B 38 338 3 HOH HOH . T 6 HOH B 39 339 169 HOH HOH . T 6 HOH B 40 340 118 HOH HOH . T 6 HOH B 41 341 114 HOH HOH . T 6 HOH B 42 342 204 HOH HOH . T 6 HOH B 43 343 22 HOH HOH . T 6 HOH B 44 344 44 HOH HOH . T 6 HOH B 45 345 67 HOH HOH . T 6 HOH B 46 346 119 HOH HOH . T 6 HOH B 47 347 146 HOH HOH . T 6 HOH B 48 348 42 HOH HOH . T 6 HOH B 49 349 139 HOH HOH . T 6 HOH B 50 350 125 HOH HOH . T 6 HOH B 51 351 99 HOH HOH . T 6 HOH B 52 352 20 HOH HOH . T 6 HOH B 53 353 53 HOH HOH . T 6 HOH B 54 354 95 HOH HOH . T 6 HOH B 55 355 32 HOH HOH . T 6 HOH B 56 356 106 HOH HOH . T 6 HOH B 57 357 76 HOH HOH . T 6 HOH B 58 358 96 HOH HOH . T 6 HOH B 59 359 58 HOH HOH . T 6 HOH B 60 360 203 HOH HOH . T 6 HOH B 61 361 110 HOH HOH . T 6 HOH B 62 362 201 HOH HOH . T 6 HOH B 63 363 81 HOH HOH . T 6 HOH B 64 364 171 HOH HOH . T 6 HOH B 65 365 14 HOH HOH . T 6 HOH B 66 366 123 HOH HOH . T 6 HOH B 67 367 9 HOH HOH . T 6 HOH B 68 368 93 HOH HOH . T 6 HOH B 69 369 85 HOH HOH . T 6 HOH B 70 370 87 HOH HOH . T 6 HOH B 71 371 101 HOH HOH . T 6 HOH B 72 372 154 HOH HOH . T 6 HOH B 73 373 142 HOH HOH . T 6 HOH B 74 374 167 HOH HOH . T 6 HOH B 75 375 182 HOH HOH . T 6 HOH B 76 376 54 HOH HOH . T 6 HOH B 77 377 195 HOH HOH . T 6 HOH B 78 378 90 HOH HOH . T 6 HOH B 79 379 218 HOH HOH . T 6 HOH B 80 380 73 HOH HOH . T 6 HOH B 81 381 186 HOH HOH . T 6 HOH B 82 382 212 HOH HOH . T 6 HOH B 83 383 147 HOH HOH . T 6 HOH B 84 384 77 HOH HOH . T 6 HOH B 85 385 46 HOH HOH . T 6 HOH B 86 386 134 HOH HOH . T 6 HOH B 87 387 150 HOH HOH . T 6 HOH B 88 388 179 HOH HOH . T 6 HOH B 89 389 191 HOH HOH . T 6 HOH B 90 390 75 HOH HOH . T 6 HOH B 91 391 117 HOH HOH . T 6 HOH B 92 392 207 HOH HOH . T 6 HOH B 93 393 120 HOH HOH . T 6 HOH B 94 394 164 HOH HOH . T 6 HOH B 95 395 126 HOH HOH . T 6 HOH B 96 396 209 HOH HOH . T 6 HOH B 97 397 127 HOH HOH . T 6 HOH B 98 398 83 HOH HOH . T 6 HOH B 99 399 183 HOH HOH . T 6 HOH B 100 400 205 HOH HOH . T 6 HOH B 101 401 149 HOH HOH . T 6 HOH B 102 402 165 HOH HOH . T 6 HOH B 103 403 190 HOH HOH . T 6 HOH B 104 404 180 HOH HOH . T 6 HOH B 105 405 166 HOH HOH . T 6 HOH B 106 406 137 HOH HOH . T 6 HOH B 107 407 111 HOH HOH . T 6 HOH B 108 408 100 HOH HOH . T 6 HOH B 109 409 80 HOH HOH . T 6 HOH B 110 410 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYJ . . . D 3 -8.635 5.733 14.894 0.6 40.32 ? C1 MYJ 202 A 1 HETATM 2 C C2 MYJ . . . D 3 -9.17 4.699 15.837 0.6 35.65 ? C2 MYJ 202 A 1 HETATM 3 C C3 MYJ . . . D 3 -9.713 5.063 17.072 0.6 32.95 ? C3 MYJ 202 A 1 HETATM 4 C C4 MYJ . . . D 3 -10.208 4.119 17.958 0.6 45.57 ? C4 MYJ 202 A 1 HETATM 5 C C5 MYJ . . . D 3 -10.156 2.779 17.64 0.6 50.16 ? C5 MYJ 202 A 1 HETATM 6 C C6 MYJ . . . D 3 -9.579 2.405 16.438 0.6 46.21 ? C6 MYJ 202 A 1 HETATM 7 C C7 MYJ . . . D 3 -9.087 3.35 15.549 0.6 40.72 ? C7 MYJ 202 A 1 HETATM 8 N N1 MYJ . . . D 3 -9.492 0.99 16.1 0.6 53.32 ? N1 MYJ 202 A 1 HETATM 9 O O1 MYJ . . . D 3 -8.726 0.66 15.208 0.6 56.53 ? O1 MYJ 202 A 1 HETATM 10 O O2 MYJ . . . D 3 -10.177 0.197 16.732 0.6 47.48 -1 O2 MYJ 202 A 1 HETATM 11 O O3 MYJ . . . D 3 -9.806 6.389 17.38 0.6 29.87 ? O3 MYJ 202 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 907 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 11 #