data_6OO0 # _model_server_result.job_id MTNkzN1vpbpnWvkaBAvxNg _model_server_result.datetime_utc '2024-11-01 03:45:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6OO0 # _exptl.entry_id 6OO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.99 _cell.angle_gamma 90 _cell.entry_id 6OO0 _cell.length_a 83.06 _cell.length_b 69.56 _cell.length_c 95.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 138 L CYS 134 1_555 A SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 215 L CYS 211 1_555 B SG CYS 271 H CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 107 H CYS 104 1_555 B SG CYS 128 H CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 117 H CYS 114 1_555 B SG CYS 137 H CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 126 H CYS 123 1_555 B SG CYS 142 H CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 195 H CYS 192 1_555 B SG CYS 251 H CYS 248 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 B SG CYS 195 H CYS 192 1_555 B SG CYS 251 H CYS 248 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6OO0 _atom_sites.fract_transf_matrix[1][1] 0.012039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003678 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD L 1 301 1 MPD MPD . D 3 MPD L 1 302 2 MPD MPD . E 3 MPD H 1 301 3 MPD MPD . F 4 HOH L 1 401 39 HOH HOH . F 4 HOH L 2 402 11 HOH HOH . F 4 HOH L 3 403 23 HOH HOH . F 4 HOH L 4 404 58 HOH HOH . F 4 HOH L 5 405 9 HOH HOH . F 4 HOH L 6 406 67 HOH HOH . F 4 HOH L 7 407 18 HOH HOH . F 4 HOH L 8 408 8 HOH HOH . F 4 HOH L 9 409 55 HOH HOH . F 4 HOH L 10 410 21 HOH HOH . F 4 HOH L 11 411 65 HOH HOH . F 4 HOH L 12 412 59 HOH HOH . F 4 HOH L 13 413 2 HOH HOH . F 4 HOH L 14 414 61 HOH HOH . F 4 HOH L 15 415 60 HOH HOH . F 4 HOH L 16 416 30 HOH HOH . F 4 HOH L 17 417 45 HOH HOH . F 4 HOH L 18 418 15 HOH HOH . F 4 HOH L 19 419 66 HOH HOH . F 4 HOH L 20 420 37 HOH HOH . F 4 HOH L 21 421 62 HOH HOH . F 4 HOH L 22 422 40 HOH HOH . F 4 HOH L 23 423 48 HOH HOH . F 4 HOH L 24 424 52 HOH HOH . F 4 HOH L 25 425 41 HOH HOH . F 4 HOH L 26 426 10 HOH HOH . F 4 HOH L 27 427 47 HOH HOH . F 4 HOH L 28 428 63 HOH HOH . F 4 HOH L 29 429 17 HOH HOH . F 4 HOH L 30 430 44 HOH HOH . F 4 HOH L 31 431 28 HOH HOH . F 4 HOH L 32 432 51 HOH HOH . G 4 HOH H 1 401 68 HOH HOH . G 4 HOH H 2 402 31 HOH HOH . G 4 HOH H 3 403 57 HOH HOH . G 4 HOH H 4 404 43 HOH HOH . G 4 HOH H 5 405 25 HOH HOH . G 4 HOH H 6 406 22 HOH HOH . G 4 HOH H 7 407 50 HOH HOH . G 4 HOH H 8 408 12 HOH HOH . G 4 HOH H 9 409 26 HOH HOH . G 4 HOH H 10 410 13 HOH HOH . G 4 HOH H 11 411 56 HOH HOH . G 4 HOH H 12 412 19 HOH HOH . G 4 HOH H 13 413 64 HOH HOH . G 4 HOH H 14 414 24 HOH HOH . G 4 HOH H 15 415 5 HOH HOH . G 4 HOH H 16 416 42 HOH HOH . G 4 HOH H 17 417 54 HOH HOH . G 4 HOH H 18 418 35 HOH HOH . G 4 HOH H 19 419 29 HOH HOH . G 4 HOH H 20 420 34 HOH HOH . G 4 HOH H 21 421 49 HOH HOH . G 4 HOH H 22 422 3 HOH HOH . G 4 HOH H 23 423 53 HOH HOH . G 4 HOH H 24 424 1 HOH HOH . G 4 HOH H 25 425 38 HOH HOH . G 4 HOH H 26 426 7 HOH HOH . G 4 HOH H 27 427 27 HOH HOH . G 4 HOH H 28 428 33 HOH HOH . G 4 HOH H 29 429 6 HOH HOH . G 4 HOH H 30 430 16 HOH HOH . G 4 HOH H 31 431 14 HOH HOH . G 4 HOH H 32 432 46 HOH HOH . G 4 HOH H 33 433 36 HOH HOH . G 4 HOH H 34 434 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 -10.937 -38.283 -17.762 1 60.03 ? C1 MPD 301 L 1 HETATM 2 C C2 MPD . . . C 3 -10.027 -37.115 -18.156 1 63.34 ? C2 MPD 301 L 1 HETATM 3 O O2 MPD . . . C 3 -8.72 -37.669 -18.5 1 57.47 ? O2 MPD 301 L 1 HETATM 4 C CM MPD . . . C 3 -10.533 -36.397 -19.406 1 61.43 ? CM MPD 301 L 1 HETATM 5 C C3 MPD . . . C 3 -9.933 -36.114 -16.996 1 72.47 ? C3 MPD 301 L 1 HETATM 6 C C4 MPD . . . C 3 -8.988 -36.524 -15.871 1 76.84 ? C4 MPD 301 L 1 HETATM 7 O O4 MPD . . . C 3 -7.727 -36.855 -16.408 1 85.52 ? O4 MPD 301 L 1 HETATM 8 C C5 MPD . . . C 3 -8.819 -35.399 -14.847 1 69.31 ? C5 MPD 301 L 1 HETATM 9 H H11 MPD . . . C 3 -11.306 -38.131 -16.748 1 72.02 ? H11 MPD 301 L 1 HETATM 10 H H12 MPD . . . C 3 -10.372 -39.215 -17.807 1 72.02 ? H12 MPD 301 L 1 HETATM 11 H H13 MPD . . . C 3 -11.779 -38.336 -18.452 1 72.02 ? H13 MPD 301 L 1 HETATM 12 H HO2 MPD . . . C 3 -8.037 -37.284 -17.912 1 68.95 ? HO2 MPD 301 L 1 HETATM 13 H HM1 MPD . . . C 3 -10.707 -35.346 -19.175 1 73.71 ? HM1 MPD 301 L 1 HETATM 14 H HM2 MPD . . . C 3 -11.466 -36.855 -19.736 1 73.71 ? HM2 MPD 301 L 1 HETATM 15 H HM3 MPD . . . C 3 -9.789 -36.477 -20.198 1 73.71 ? HM3 MPD 301 L 1 HETATM 16 H H31 MPD . . . C 3 -9.608 -35.152 -17.391 1 86.95 ? H31 MPD 301 L 1 HETATM 17 H H32 MPD . . . C 3 -10.93 -35.97 -16.579 1 86.95 ? H32 MPD 301 L 1 HETATM 18 H H4 MPD . . . C 3 -9.409 -37.392 -15.364 1 92.2 ? H4 MPD 301 L 1 HETATM 19 H HO4 MPD . . . C 3 -7.363 -37.631 -15.933 1 102.61 ? HO4 MPD 301 L 1 HETATM 20 H H51 MPD . . . C 3 -7.766 -35.125 -14.78 1 83.16 ? H51 MPD 301 L 1 HETATM 21 H H52 MPD . . . C 3 -9.169 -35.74 -13.873 1 83.16 ? H52 MPD 301 L 1 HETATM 22 H H53 MPD . . . C 3 -9.401 -34.533 -15.161 1 83.16 ? H53 MPD 301 L 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #