data_6OO1 # _model_server_result.job_id cvc7R5d5zaJ4pkshsJ8dPA _model_server_result.datetime_utc '2024-11-13 04:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oo1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":406}' # _entry.id 6OO1 # _exptl.entry_id 6OO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OO1 _cell.length_a 59.273 _cell.length_b 67.69 _cell.length_c 67.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,T 1 1 B,L,M,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 M FE HEM . B HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6OO1 _atom_sites.fract_transf_matrix[1][1] 0.016871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 EDO A 1 202 201 EDO EDO . E 3 EDO A 1 203 301 EDO EDO . F 3 EDO A 1 204 501 EDO EDO . G 4 JZ0 A 1 205 601 JZ0 JZ0 . H 3 EDO A 1 206 701 EDO EDO . I 3 EDO A 1 207 1001 EDO EDO . J 5 SO4 A 1 208 1 SO4 SO4 . K 5 SO4 A 1 209 2 SO4 SO4 . L 3 EDO B 1 401 401 EDO EDO . M 2 HEM B 1 402 139 HEM HEM . N 3 EDO B 1 403 201 EDO EDO . O 4 JZ0 B 1 404 301 JZ0 JZ0 . P 3 EDO B 1 405 401 EDO EDO . Q 3 EDO B 1 406 501 EDO EDO . R 3 EDO B 1 407 601 EDO EDO . S 3 EDO B 1 408 801 EDO EDO . T 6 HOH A 1 301 185 HOH HOH . T 6 HOH A 2 302 218 HOH HOH . T 6 HOH A 3 303 183 HOH HOH . T 6 HOH A 4 304 112 HOH HOH . T 6 HOH A 5 305 109 HOH HOH . T 6 HOH A 6 306 54 HOH HOH . T 6 HOH A 7 307 215 HOH HOH . T 6 HOH A 8 308 111 HOH HOH . T 6 HOH A 9 309 191 HOH HOH . T 6 HOH A 10 310 117 HOH HOH . T 6 HOH A 11 311 75 HOH HOH . T 6 HOH A 12 312 222 HOH HOH . T 6 HOH A 13 313 94 HOH HOH . T 6 HOH A 14 314 204 HOH HOH . T 6 HOH A 15 315 214 HOH HOH . T 6 HOH A 16 316 179 HOH HOH . T 6 HOH A 17 317 46 HOH HOH . T 6 HOH A 18 318 63 HOH HOH . T 6 HOH A 19 319 114 HOH HOH . T 6 HOH A 20 320 35 HOH HOH . T 6 HOH A 21 321 40 HOH HOH . T 6 HOH A 22 322 212 HOH HOH . T 6 HOH A 23 323 223 HOH HOH . T 6 HOH A 24 324 155 HOH HOH . T 6 HOH A 25 325 2 HOH HOH . T 6 HOH A 26 326 7 HOH HOH . T 6 HOH A 27 327 69 HOH HOH . T 6 HOH A 28 328 15 HOH HOH . T 6 HOH A 29 329 79 HOH HOH . T 6 HOH A 30 330 1 HOH HOH . T 6 HOH A 31 331 68 HOH HOH . T 6 HOH A 32 332 156 HOH HOH . T 6 HOH A 33 333 236 HOH HOH . T 6 HOH A 34 334 43 HOH HOH . T 6 HOH A 35 335 33 HOH HOH . T 6 HOH A 36 336 77 HOH HOH . T 6 HOH A 37 337 93 HOH HOH . T 6 HOH A 38 338 188 HOH HOH . T 6 HOH A 39 339 125 HOH HOH . T 6 HOH A 40 340 30 HOH HOH . T 6 HOH A 41 341 91 HOH HOH . T 6 HOH A 42 342 72 HOH HOH . T 6 HOH A 43 343 22 HOH HOH . T 6 HOH A 44 344 210 HOH HOH . T 6 HOH A 45 345 38 HOH HOH . T 6 HOH A 46 346 164 HOH HOH . T 6 HOH A 47 347 76 HOH HOH . T 6 HOH A 48 348 18 HOH HOH . T 6 HOH A 49 349 163 HOH HOH . T 6 HOH A 50 350 53 HOH HOH . T 6 HOH A 51 351 32 HOH HOH . T 6 HOH A 52 352 49 HOH HOH . T 6 HOH A 53 353 186 HOH HOH . T 6 HOH A 54 354 153 HOH HOH . T 6 HOH A 55 355 51 HOH HOH . T 6 HOH A 56 356 16 HOH HOH . T 6 HOH A 57 357 90 HOH HOH . T 6 HOH A 58 358 37 HOH HOH . T 6 HOH A 59 359 219 HOH HOH . T 6 HOH A 60 360 129 HOH HOH . T 6 HOH A 61 361 70 HOH HOH . T 6 HOH A 62 362 65 HOH HOH . T 6 HOH A 63 363 101 HOH HOH . T 6 HOH A 64 364 17 HOH HOH . T 6 HOH A 65 365 61 HOH HOH . T 6 HOH A 66 366 23 HOH HOH . T 6 HOH A 67 367 176 HOH HOH . T 6 HOH A 68 368 181 HOH HOH . T 6 HOH A 69 369 216 HOH HOH . T 6 HOH A 70 370 135 HOH HOH . T 6 HOH A 71 371 227 HOH HOH . T 6 HOH A 72 372 165 HOH HOH . T 6 HOH A 73 373 116 HOH HOH . T 6 HOH A 74 374 121 HOH HOH . T 6 HOH A 75 375 159 HOH HOH . T 6 HOH A 76 376 229 HOH HOH . T 6 HOH A 77 377 56 HOH HOH . T 6 HOH A 78 378 150 HOH HOH . T 6 HOH A 79 379 21 HOH HOH . T 6 HOH A 80 380 133 HOH HOH . T 6 HOH A 81 381 95 HOH HOH . T 6 HOH A 82 382 233 HOH HOH . T 6 HOH A 83 383 66 HOH HOH . T 6 HOH A 84 384 74 HOH HOH . T 6 HOH A 85 385 115 HOH HOH . T 6 HOH A 86 386 5 HOH HOH . T 6 HOH A 87 387 190 HOH HOH . T 6 HOH A 88 388 103 HOH HOH . T 6 HOH A 89 389 161 HOH HOH . T 6 HOH A 90 390 136 HOH HOH . T 6 HOH A 91 391 231 HOH HOH . T 6 HOH A 92 392 28 HOH HOH . T 6 HOH A 93 393 189 HOH HOH . T 6 HOH A 94 394 105 HOH HOH . T 6 HOH A 95 395 128 HOH HOH . T 6 HOH A 96 396 171 HOH HOH . T 6 HOH A 97 397 99 HOH HOH . T 6 HOH A 98 398 184 HOH HOH . T 6 HOH A 99 399 217 HOH HOH . T 6 HOH A 100 400 209 HOH HOH . T 6 HOH A 101 401 192 HOH HOH . T 6 HOH A 102 402 234 HOH HOH . T 6 HOH A 103 403 4 HOH HOH . T 6 HOH A 104 404 235 HOH HOH . T 6 HOH A 105 405 130 HOH HOH . T 6 HOH A 106 406 88 HOH HOH . T 6 HOH A 107 407 138 HOH HOH . U 6 HOH B 1 501 193 HOH HOH . U 6 HOH B 2 502 197 HOH HOH . U 6 HOH B 3 503 92 HOH HOH . U 6 HOH B 4 504 62 HOH HOH . U 6 HOH B 5 505 194 HOH HOH . U 6 HOH B 6 506 36 HOH HOH . U 6 HOH B 7 507 198 HOH HOH . U 6 HOH B 8 508 11 HOH HOH . U 6 HOH B 9 509 203 HOH HOH . U 6 HOH B 10 510 9 HOH HOH . U 6 HOH B 11 511 145 HOH HOH . U 6 HOH B 12 512 232 HOH HOH . U 6 HOH B 13 513 196 HOH HOH . U 6 HOH B 14 514 122 HOH HOH . U 6 HOH B 15 515 126 HOH HOH . U 6 HOH B 16 516 168 HOH HOH . U 6 HOH B 17 517 230 HOH HOH . U 6 HOH B 18 518 213 HOH HOH . U 6 HOH B 19 519 220 HOH HOH . U 6 HOH B 20 520 89 HOH HOH . U 6 HOH B 21 521 110 HOH HOH . U 6 HOH B 22 522 41 HOH HOH . U 6 HOH B 23 523 124 HOH HOH . U 6 HOH B 24 524 81 HOH HOH . U 6 HOH B 25 525 78 HOH HOH . U 6 HOH B 26 526 120 HOH HOH . U 6 HOH B 27 527 80 HOH HOH . U 6 HOH B 28 528 152 HOH HOH . U 6 HOH B 29 529 44 HOH HOH . U 6 HOH B 30 530 96 HOH HOH . U 6 HOH B 31 531 221 HOH HOH . U 6 HOH B 32 532 83 HOH HOH . U 6 HOH B 33 533 29 HOH HOH . U 6 HOH B 34 534 225 HOH HOH . U 6 HOH B 35 535 84 HOH HOH . U 6 HOH B 36 536 58 HOH HOH . U 6 HOH B 37 537 182 HOH HOH . U 6 HOH B 38 538 24 HOH HOH . U 6 HOH B 39 539 27 HOH HOH . U 6 HOH B 40 540 140 HOH HOH . U 6 HOH B 41 541 134 HOH HOH . U 6 HOH B 42 542 42 HOH HOH . U 6 HOH B 43 543 34 HOH HOH . U 6 HOH B 44 544 142 HOH HOH . U 6 HOH B 45 545 25 HOH HOH . U 6 HOH B 46 546 85 HOH HOH . U 6 HOH B 47 547 160 HOH HOH . U 6 HOH B 48 548 73 HOH HOH . U 6 HOH B 49 549 100 HOH HOH . U 6 HOH B 50 550 31 HOH HOH . U 6 HOH B 51 551 149 HOH HOH . U 6 HOH B 52 552 47 HOH HOH . U 6 HOH B 53 553 127 HOH HOH . U 6 HOH B 54 554 14 HOH HOH . U 6 HOH B 55 555 199 HOH HOH . U 6 HOH B 56 556 26 HOH HOH . U 6 HOH B 57 557 195 HOH HOH . U 6 HOH B 58 558 108 HOH HOH . U 6 HOH B 59 559 207 HOH HOH . U 6 HOH B 60 560 205 HOH HOH . U 6 HOH B 61 561 107 HOH HOH . U 6 HOH B 62 562 20 HOH HOH . U 6 HOH B 63 563 19 HOH HOH . U 6 HOH B 64 564 10 HOH HOH . U 6 HOH B 65 565 45 HOH HOH . U 6 HOH B 66 566 237 HOH HOH . U 6 HOH B 67 567 147 HOH HOH . U 6 HOH B 68 568 224 HOH HOH . U 6 HOH B 69 569 52 HOH HOH . U 6 HOH B 70 570 48 HOH HOH . U 6 HOH B 71 571 175 HOH HOH . U 6 HOH B 72 572 82 HOH HOH . U 6 HOH B 73 573 239 HOH HOH . U 6 HOH B 74 574 55 HOH HOH . U 6 HOH B 75 575 57 HOH HOH . U 6 HOH B 76 576 211 HOH HOH . U 6 HOH B 77 577 144 HOH HOH . U 6 HOH B 78 578 132 HOH HOH . U 6 HOH B 79 579 238 HOH HOH . U 6 HOH B 80 580 102 HOH HOH . U 6 HOH B 81 581 202 HOH HOH . U 6 HOH B 82 582 97 HOH HOH . U 6 HOH B 83 583 104 HOH HOH . U 6 HOH B 84 584 187 HOH HOH . U 6 HOH B 85 585 200 HOH HOH . U 6 HOH B 86 586 177 HOH HOH . U 6 HOH B 87 587 206 HOH HOH . U 6 HOH B 88 588 166 HOH HOH . U 6 HOH B 89 589 98 HOH HOH . U 6 HOH B 90 590 106 HOH HOH . U 6 HOH B 91 591 208 HOH HOH . U 6 HOH B 92 592 151 HOH HOH . U 6 HOH B 93 593 141 HOH HOH . U 6 HOH B 94 594 180 HOH HOH . U 6 HOH B 95 595 87 HOH HOH . U 6 HOH B 96 596 154 HOH HOH . U 6 HOH B 97 597 123 HOH HOH . U 6 HOH B 98 598 228 HOH HOH . U 6 HOH B 99 599 60 HOH HOH . U 6 HOH B 100 600 59 HOH HOH . U 6 HOH B 101 601 137 HOH HOH . U 6 HOH B 102 602 226 HOH HOH . U 6 HOH B 103 603 162 HOH HOH . U 6 HOH B 104 604 119 HOH HOH . U 6 HOH B 105 605 113 HOH HOH . U 6 HOH B 106 606 64 HOH HOH . U 6 HOH B 107 607 139 HOH HOH . U 6 HOH B 108 608 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Q 3 -18.482 19.469 -11.101 1 32.21 ? C1 EDO 406 B 1 HETATM 2 O O1 EDO . . . Q 3 -18.317 19.404 -9.675 1 28.79 ? O1 EDO 406 B 1 HETATM 3 C C2 EDO . . . Q 3 -19.325 20.585 -11.581 1 34.89 ? C2 EDO 406 B 1 HETATM 4 O O2 EDO . . . Q 3 -20.693 20.237 -11.764 1 35.51 ? O2 EDO 406 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #