data_6OO2 # _model_server_result.job_id g-QCVs6ehNt5OOINKDR-cw _model_server_result.datetime_utc '2025-09-04 14:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oo2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":501}' # _entry.id 6OO2 # _exptl.entry_id 6OO2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OO2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonadecameric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 T N N ? 4 W N N ? 4 Z N N ? 4 CA N N ? 4 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 80 A SER 180 1_555 V MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 T O1B ADP . A ADP 501 1_555 U BE BEF . A BEF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? metalc ? metalc3 T O2B ADP . A ADP 501 1_555 V MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 B OG SER 80 B SER 180 1_555 Y MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 W O3B ADP . B ADP 501 1_555 X BE BEF . B BEF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? metalc ? metalc6 W O1B ADP . B ADP 501 1_555 Y MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc7 W O2B ADP . B ADP 501 1_555 Y MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 C OG SER 80 C SER 180 1_555 BA MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 Z O3B ADP . C ADP 501 1_555 AA BE BEF . C BEF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? metalc ? metalc10 Z O1B ADP . C ADP 501 1_555 BA MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc11 Z O2B ADP . C ADP 501 1_555 BA MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc12 D OG SER 80 D SER 180 1_555 DA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc13 CA O2B ADP . D ADP 501 1_555 DA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6OO2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 4 ADP A 1 501 501 ADP ADP . U 5 BEF A 1 502 502 BEF BEF . V 6 MG A 1 503 503 MG MG . W 4 ADP B 1 501 501 ADP ADP . X 5 BEF B 1 502 502 BEF BEF . Y 6 MG B 1 503 503 MG MG . Z 4 ADP C 1 501 501 ADP ADP . AA 5 BEF C 1 502 502 BEF BEF . BA 6 MG C 1 503 503 MG MG . CA 4 ADP D 1 501 501 ADP ADP . DA 6 MG D 1 502 502 MG MG . EA 4 ADP E 1 501 501 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . T 4 132.408 137.803 172.889 1 62.51 ? PB ADP 501 A 1 HETATM 2 O O1B ADP . . . T 4 133.073 137.286 171.547 1 62.51 ? O1B ADP 501 A 1 HETATM 3 O O2B ADP . . . T 4 131.306 138.76 172.666 1 62.51 ? O2B ADP 501 A 1 HETATM 4 O O3B ADP . . . T 4 133.561 138.428 173.688 1 62.51 ? O3B ADP 501 A 1 HETATM 5 P PA ADP . . . T 4 131.588 136.085 175.063 1 62.51 ? PA ADP 501 A 1 HETATM 6 O O1A ADP . . . T 4 131.133 134.68 175.117 1 62.51 ? O1A ADP 501 A 1 HETATM 7 O O2A ADP . . . T 4 130.544 137.065 175.617 1 62.51 ? O2A ADP 501 A 1 HETATM 8 O O3A ADP . . . T 4 131.87 136.469 173.554 1 62.51 ? O3A ADP 501 A 1 HETATM 9 O O5' ADP . . . T 4 132.984 136.376 175.711 1 62.51 ? O5' ADP 501 A 1 HETATM 10 C C5' ADP . . . T 4 134.119 135.558 175.376 1 62.51 ? C5' ADP 501 A 1 HETATM 11 C C4' ADP . . . T 4 134.297 134.554 176.478 1 62.51 ? C4' ADP 501 A 1 HETATM 12 O O4' ADP . . . T 4 135.675 134.576 176.914 1 62.51 ? O4' ADP 501 A 1 HETATM 13 C C3' ADP . . . T 4 133.461 134.798 177.739 1 62.51 ? C3' ADP 501 A 1 HETATM 14 O O3' ADP . . . T 4 132.211 134.126 177.661 1 62.51 ? O3' ADP 501 A 1 HETATM 15 C C2' ADP . . . T 4 134.365 134.198 178.81 1 62.51 ? C2' ADP 501 A 1 HETATM 16 O O2' ADP . . . T 4 134.276 132.789 178.841 1 62.51 ? O2' ADP 501 A 1 HETATM 17 C C1' ADP . . . T 4 135.722 134.702 178.322 1 62.51 ? C1' ADP 501 A 1 HETATM 18 N N9 ADP . . . T 4 135.988 136.098 178.628 1 62.51 ? N9 ADP 501 A 1 HETATM 19 C C8 ADP . . . T 4 136.302 137.087 177.736 1 62.51 ? C8 ADP 501 A 1 HETATM 20 N N7 ADP . . . T 4 136.492 138.263 178.281 1 62.51 ? N7 ADP 501 A 1 HETATM 21 C C5 ADP . . . T 4 136.286 138.03 179.631 1 62.51 ? C5 ADP 501 A 1 HETATM 22 C C6 ADP . . . T 4 136.336 138.863 180.76 1 62.51 ? C6 ADP 501 A 1 HETATM 23 N N6 ADP . . . T 4 136.623 140.168 180.706 1 62.51 ? N6 ADP 501 A 1 HETATM 24 N N1 ADP . . . T 4 136.079 138.307 181.97 1 62.51 ? N1 ADP 501 A 1 HETATM 25 C C2 ADP . . . T 4 135.793 136.999 182.044 1 62.51 ? C2 ADP 501 A 1 HETATM 26 N N3 ADP . . . T 4 135.717 136.118 181.042 1 62.51 ? N3 ADP 501 A 1 HETATM 27 C C4 ADP . . . T 4 135.975 136.697 179.862 1 62.51 ? C4 ADP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #