data_6OO8
#
_model_server_result.job_id            4HuA4DgQcKfnfGo2tnqsSA 
_model_server_result.datetime_utc      '2024-10-10 00:21:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oo8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1001}' 
#
_entry.id    6OO8 
#
_exptl.entry_id    6OO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OO8 
_cell.length_a            60.69 
_cell.length_b            67.22 
_cell.length_c            67.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,Q 1 1 
B,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CG HIS 55 A HIS 55 1_555 D CL1 PCI . A PCI 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.949 ? 
covale ? covale2 A CE1 HIS 55 A HIS 55 1_555 D C6 PCI . A PCI 202 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.473 ? 
covale ? covale3 A CE1 HIS 55 A HIS 55 1_555 D C2 PCI . A PCI 202 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.106 ? 
covale ? covale4 A NE2 HIS 55 A HIS 55 1_555 D C2 PCI . A PCI 202 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.371 ? 
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
covale ? covale5 B CB HIS 55 B HIS 55 1_555 O CL5 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.551 ? 
covale ? covale6 B CG HIS 55 B HIS 55 1_555 O C6 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.142 ? 
covale ? covale7 B CD2 HIS 55 B HIS 55 1_555 O C6 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.179 ? 
covale ? covale8 B CE1 HIS 55 B HIS 55 1_555 O C1 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.439 ? 
covale ? covale9 B CE1 HIS 55 B HIS 55 1_555 O C2 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.603 ? 
covale ? covale10 B CE1 HIS 55 B HIS 55 1_555 O C3 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.621 ? 
covale ? covale11 B CE1 HIS 55 B HIS 55 1_555 O C4 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.431 ? 
covale ? covale12 B CE1 HIS 55 B HIS 55 1_555 O C5 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.179 ? 
covale ? covale13 B CE1 HIS 55 B HIS 55 1_555 O C6 PCI . B PCI 1003 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.176 ? 
metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 N FE HEM . B HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc3 C FE HEM . A HEM 201 1_555 Q O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 N FE HEM . B HEM 1002 1_555 R O HOH . B HOH 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     6OO8 
_atom_sites.fract_transf_matrix[1][1]    0.016477 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014877 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014797 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 139 HEM HEM . 
D 3 PCI A 1 202 301 PCI PCI . 
E 4 EDO A 1 203 401 EDO EDO . 
F 4 EDO A 1 204 501 EDO EDO . 
G 4 EDO A 1 205 601 EDO EDO . 
H 4 EDO A 1 206 701 EDO EDO . 
I 4 EDO A 1 207 801 EDO EDO . 
J 4 EDO A 1 208 901 EDO EDO . 
K 5 SO4 A 1 209 1 SO4 SO4 . 
L 5 SO4 A 1 210 2 SO4 SO4 . 
M 4 EDO B 1 1001 1001 EDO EDO . 
N 2 HEM B 1 1002 139 HEM HEM . 
O 3 PCI B 1 1003 301 PCI PCI . 
P 4 EDO B 1 1004 401 EDO EDO . 
Q 6 HOH A 1 301 5 HOH HOH . 
Q 6 HOH A 2 302 15 HOH HOH . 
Q 6 HOH A 3 303 97 HOH HOH . 
Q 6 HOH A 4 304 2 HOH HOH . 
Q 6 HOH A 5 305 120 HOH HOH . 
Q 6 HOH A 6 306 113 HOH HOH . 
Q 6 HOH A 7 307 82 HOH HOH . 
Q 6 HOH A 8 308 145 HOH HOH . 
Q 6 HOH A 9 309 123 HOH HOH . 
Q 6 HOH A 10 310 143 HOH HOH . 
Q 6 HOH A 11 311 76 HOH HOH . 
Q 6 HOH A 12 312 102 HOH HOH . 
Q 6 HOH A 13 313 107 HOH HOH . 
Q 6 HOH A 14 314 9 HOH HOH . 
Q 6 HOH A 15 315 153 HOH HOH . 
Q 6 HOH A 16 316 41 HOH HOH . 
Q 6 HOH A 17 317 139 HOH HOH . 
Q 6 HOH A 18 318 83 HOH HOH . 
Q 6 HOH A 19 319 95 HOH HOH . 
Q 6 HOH A 20 320 73 HOH HOH . 
Q 6 HOH A 21 321 13 HOH HOH . 
Q 6 HOH A 22 322 61 HOH HOH . 
Q 6 HOH A 23 323 1 HOH HOH . 
Q 6 HOH A 24 324 122 HOH HOH . 
Q 6 HOH A 25 325 71 HOH HOH . 
Q 6 HOH A 26 326 47 HOH HOH . 
Q 6 HOH A 27 327 43 HOH HOH . 
Q 6 HOH A 28 328 23 HOH HOH . 
Q 6 HOH A 29 329 105 HOH HOH . 
Q 6 HOH A 30 330 57 HOH HOH . 
Q 6 HOH A 31 331 8 HOH HOH . 
Q 6 HOH A 32 332 150 HOH HOH . 
Q 6 HOH A 33 333 146 HOH HOH . 
Q 6 HOH A 34 334 69 HOH HOH . 
Q 6 HOH A 35 335 14 HOH HOH . 
Q 6 HOH A 36 336 101 HOH HOH . 
Q 6 HOH A 37 337 39 HOH HOH . 
Q 6 HOH A 38 338 7 HOH HOH . 
Q 6 HOH A 39 339 66 HOH HOH . 
Q 6 HOH A 40 340 46 HOH HOH . 
Q 6 HOH A 41 341 121 HOH HOH . 
Q 6 HOH A 42 342 29 HOH HOH . 
Q 6 HOH A 43 343 58 HOH HOH . 
Q 6 HOH A 44 344 84 HOH HOH . 
Q 6 HOH A 45 345 30 HOH HOH . 
Q 6 HOH A 46 346 45 HOH HOH . 
Q 6 HOH A 47 347 11 HOH HOH . 
Q 6 HOH A 48 348 147 HOH HOH . 
Q 6 HOH A 49 349 60 HOH HOH . 
Q 6 HOH A 50 350 86 HOH HOH . 
Q 6 HOH A 51 351 59 HOH HOH . 
Q 6 HOH A 52 352 81 HOH HOH . 
Q 6 HOH A 53 353 31 HOH HOH . 
Q 6 HOH A 54 354 10 HOH HOH . 
Q 6 HOH A 55 355 50 HOH HOH . 
Q 6 HOH A 56 356 70 HOH HOH . 
Q 6 HOH A 57 357 51 HOH HOH . 
Q 6 HOH A 58 358 87 HOH HOH . 
Q 6 HOH A 59 359 75 HOH HOH . 
Q 6 HOH A 60 360 133 HOH HOH . 
Q 6 HOH A 61 361 4 HOH HOH . 
Q 6 HOH A 62 362 103 HOH HOH . 
Q 6 HOH A 63 363 52 HOH HOH . 
Q 6 HOH A 64 364 141 HOH HOH . 
Q 6 HOH A 65 365 78 HOH HOH . 
Q 6 HOH A 66 366 44 HOH HOH . 
R 6 HOH B 1 1101 119 HOH HOH . 
R 6 HOH B 2 1102 18 HOH HOH . 
R 6 HOH B 3 1103 142 HOH HOH . 
R 6 HOH B 4 1104 115 HOH HOH . 
R 6 HOH B 5 1105 26 HOH HOH . 
R 6 HOH B 6 1106 137 HOH HOH . 
R 6 HOH B 7 1107 148 HOH HOH . 
R 6 HOH B 8 1108 19 HOH HOH . 
R 6 HOH B 9 1109 42 HOH HOH . 
R 6 HOH B 10 1110 32 HOH HOH . 
R 6 HOH B 11 1111 130 HOH HOH . 
R 6 HOH B 12 1112 68 HOH HOH . 
R 6 HOH B 13 1113 124 HOH HOH . 
R 6 HOH B 14 1114 132 HOH HOH . 
R 6 HOH B 15 1115 134 HOH HOH . 
R 6 HOH B 16 1116 16 HOH HOH . 
R 6 HOH B 17 1117 131 HOH HOH . 
R 6 HOH B 18 1118 22 HOH HOH . 
R 6 HOH B 19 1119 151 HOH HOH . 
R 6 HOH B 20 1120 149 HOH HOH . 
R 6 HOH B 21 1121 85 HOH HOH . 
R 6 HOH B 22 1122 109 HOH HOH . 
R 6 HOH B 23 1123 104 HOH HOH . 
R 6 HOH B 24 1124 128 HOH HOH . 
R 6 HOH B 25 1125 49 HOH HOH . 
R 6 HOH B 26 1126 63 HOH HOH . 
R 6 HOH B 27 1127 126 HOH HOH . 
R 6 HOH B 28 1128 127 HOH HOH . 
R 6 HOH B 29 1129 108 HOH HOH . 
R 6 HOH B 30 1130 98 HOH HOH . 
R 6 HOH B 31 1131 28 HOH HOH . 
R 6 HOH B 32 1132 6 HOH HOH . 
R 6 HOH B 33 1133 33 HOH HOH . 
R 6 HOH B 34 1134 53 HOH HOH . 
R 6 HOH B 35 1135 20 HOH HOH . 
R 6 HOH B 36 1136 17 HOH HOH . 
R 6 HOH B 37 1137 111 HOH HOH . 
R 6 HOH B 38 1138 40 HOH HOH . 
R 6 HOH B 39 1139 34 HOH HOH . 
R 6 HOH B 40 1140 37 HOH HOH . 
R 6 HOH B 41 1141 65 HOH HOH . 
R 6 HOH B 42 1142 140 HOH HOH . 
R 6 HOH B 43 1143 136 HOH HOH . 
R 6 HOH B 44 1144 100 HOH HOH . 
R 6 HOH B 45 1145 36 HOH HOH . 
R 6 HOH B 46 1146 106 HOH HOH . 
R 6 HOH B 47 1147 74 HOH HOH . 
R 6 HOH B 48 1148 56 HOH HOH . 
R 6 HOH B 49 1149 48 HOH HOH . 
R 6 HOH B 50 1150 72 HOH HOH . 
R 6 HOH B 51 1151 114 HOH HOH . 
R 6 HOH B 52 1152 138 HOH HOH . 
R 6 HOH B 53 1153 96 HOH HOH . 
R 6 HOH B 54 1154 125 HOH HOH . 
R 6 HOH B 55 1155 94 HOH HOH . 
R 6 HOH B 56 1156 116 HOH HOH . 
R 6 HOH B 57 1157 55 HOH HOH . 
R 6 HOH B 58 1158 88 HOH HOH . 
R 6 HOH B 59 1159 24 HOH HOH . 
R 6 HOH B 60 1160 99 HOH HOH . 
R 6 HOH B 61 1161 27 HOH HOH . 
R 6 HOH B 62 1162 152 HOH HOH . 
R 6 HOH B 63 1163 90 HOH HOH . 
R 6 HOH B 64 1164 112 HOH HOH . 
R 6 HOH B 65 1165 67 HOH HOH . 
R 6 HOH B 66 1166 54 HOH HOH . 
R 6 HOH B 67 1167 93 HOH HOH . 
R 6 HOH B 68 1168 129 HOH HOH . 
R 6 HOH B 69 1169 135 HOH HOH . 
R 6 HOH B 70 1170 79 HOH HOH . 
R 6 HOH B 71 1171 110 HOH HOH . 
R 6 HOH B 72 1172 92 HOH HOH . 
R 6 HOH B 73 1173 89 HOH HOH . 
R 6 HOH B 74 1174 117 HOH HOH . 
R 6 HOH B 75 1175 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 4 -7.127 6.374 -29.877 1 28.27 ? C1 EDO 1001 B 1 
HETATM 2 O O1 EDO . . . M 4 -7.764 5.95 -28.656 1 23.97 ? O1 EDO 1001 B 1 
HETATM 3 C C2 EDO . . . M 4 -8.051 7.042 -30.83 1 29.86 ? C2 EDO 1001 B 1 
HETATM 4 O O2 EDO . . . M 4 -9.212 6.25 -31.123 1 28.96 ? O2 EDO 1001 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#