data_6OO9 # _model_server_result.job_id 9YZlGl2UQYB1ANgvs5Woeg _model_server_result.datetime_utc '2024-11-14 19:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6OO9 # _exptl.entry_id 6OO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OO9 _cell.length_a 77.81 _cell.length_b 102.75 _cell.length_c 127.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -102.75 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -102.75 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.408 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 147 n n CHA C4D HEM doub 148 n n CHA HHA HEM sing 149 n n CHB C4A HEM sing 150 n n CHB C1B HEM doub 151 n n CHB HHB HEM sing 152 n n CHC C4B HEM sing 153 n n CHC C1C HEM doub 154 n n CHC HHC HEM sing 155 n n CHD C4C HEM doub 156 n n CHD C1D HEM sing 157 n n CHD HHD HEM sing 158 n n C1A C2A HEM doub 159 n y C1A NA HEM sing 160 n y C2A C3A HEM sing 161 n y C2A CAA HEM sing 162 n n C3A C4A HEM doub 163 n y C3A CMA HEM sing 164 n n C4A NA HEM sing 165 n y CMA HMA HEM sing 166 n n CMA HMAA HEM sing 167 n n CMA HMAB HEM sing 168 n n CAA CBA HEM sing 169 n n CAA HAA HEM sing 170 n n CAA HAAA HEM sing 171 n n CBA CGA HEM sing 172 n n CBA HBA HEM sing 173 n n CBA HBAA HEM sing 174 n n CGA O1A HEM doub 175 n n CGA O2A HEM sing 176 n n C1B C2B HEM sing 177 n n C1B NB HEM sing 178 n n C2B C3B HEM doub 179 n n C2B CMB HEM sing 180 n n C3B C4B HEM sing 181 n n C3B CAB HEM sing 182 n n C4B NB HEM doub 183 n n CMB HMB HEM sing 184 n n CMB HMBA HEM sing 185 n n CMB HMBB HEM sing 186 n n CAB CBB HEM doub 187 n n CAB HAB HEM sing 188 n n CBB HBB HEM sing 189 n n CBB HBBA HEM sing 190 n n C1C C2C HEM sing 191 n y C1C NC HEM sing 192 n y C2C C3C HEM doub 193 n y C2C CMC HEM sing 194 n n C3C C4C HEM sing 195 n y C3C CAC HEM sing 196 n n C4C NC HEM sing 197 n y CMC HMC HEM sing 198 n n CMC HMCA HEM sing 199 n n CMC HMCB HEM sing 200 n n CAC CBC HEM doub 201 n n CAC HAC HEM sing 202 n n CBC HBC HEM sing 203 n n CBC HBCA HEM sing 204 n n C1D C2D HEM sing 205 n n C1D ND HEM doub 206 n n C2D C3D HEM doub 207 n n C2D CMD HEM sing 208 n n C3D C4D HEM sing 209 n n C3D CAD HEM sing 210 n n C4D ND HEM sing 211 n n CMD HMD HEM sing 212 n n CMD HMDA HEM sing 213 n n CMD HMDB HEM sing 214 n n CAD CBD HEM sing 215 n n CAD HAD HEM sing 216 n n CAD HADA HEM sing 217 n n CBD CGD HEM sing 218 n n CBD HBD HEM sing 219 n n CBD HBDA HEM sing 220 n n CGD O1D HEM doub 221 n n CGD O2D HEM sing 222 n n O2A H2A HEM sing 223 n n O2D H2D HEM sing 224 n n FE NA HEM sing 225 n n FE NB HEM sing 226 n n FE NC HEM sing 227 n n FE ND HEM sing 228 n n # _atom_sites.entry_id 6OO9 _atom_sites.fract_transf_matrix[1][1] 0.012852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 MWV A 1 602 700 MWV MBF . D 4 EDO A 1 603 800 EDO EDO . E 4 EDO A 1 604 801 EDO EDO . F 5 DMS A 1 605 900 DMS DMS . G 6 HOH A 1 701 39 HOH HOH . G 6 HOH A 2 702 21 HOH HOH . G 6 HOH A 3 703 3 HOH HOH . G 6 HOH A 4 704 19 HOH HOH . G 6 HOH A 5 705 16 HOH HOH . G 6 HOH A 6 706 52 HOH HOH . G 6 HOH A 7 707 12 HOH HOH . G 6 HOH A 8 708 31 HOH HOH . G 6 HOH A 9 709 26 HOH HOH . G 6 HOH A 10 710 42 HOH HOH . G 6 HOH A 11 711 4 HOH HOH . G 6 HOH A 12 712 56 HOH HOH . G 6 HOH A 13 713 57 HOH HOH . G 6 HOH A 14 714 18 HOH HOH . G 6 HOH A 15 715 10 HOH HOH . G 6 HOH A 16 716 51 HOH HOH . G 6 HOH A 17 717 37 HOH HOH . G 6 HOH A 18 718 58 HOH HOH . G 6 HOH A 19 719 44 HOH HOH . G 6 HOH A 20 720 41 HOH HOH . G 6 HOH A 21 721 1 HOH HOH . G 6 HOH A 22 722 34 HOH HOH . G 6 HOH A 23 723 35 HOH HOH . G 6 HOH A 24 724 23 HOH HOH . G 6 HOH A 25 725 40 HOH HOH . G 6 HOH A 26 726 7 HOH HOH . G 6 HOH A 27 727 43 HOH HOH . G 6 HOH A 28 728 53 HOH HOH . G 6 HOH A 29 729 48 HOH HOH . G 6 HOH A 30 730 46 HOH HOH . G 6 HOH A 31 731 28 HOH HOH . G 6 HOH A 32 732 54 HOH HOH . G 6 HOH A 33 733 36 HOH HOH . G 6 HOH A 34 734 30 HOH HOH . G 6 HOH A 35 735 29 HOH HOH . G 6 HOH A 36 736 17 HOH HOH . G 6 HOH A 37 737 50 HOH HOH . G 6 HOH A 38 738 24 HOH HOH . G 6 HOH A 39 739 8 HOH HOH . G 6 HOH A 40 740 22 HOH HOH . G 6 HOH A 41 741 32 HOH HOH . G 6 HOH A 42 742 59 HOH HOH . G 6 HOH A 43 743 11 HOH HOH . G 6 HOH A 44 744 25 HOH HOH . G 6 HOH A 45 745 2 HOH HOH . G 6 HOH A 46 746 38 HOH HOH . G 6 HOH A 47 747 27 HOH HOH . G 6 HOH A 48 748 45 HOH HOH . G 6 HOH A 49 749 47 HOH HOH . G 6 HOH A 50 750 5 HOH HOH . G 6 HOH A 51 751 55 HOH HOH . G 6 HOH A 52 752 15 HOH HOH . G 6 HOH A 53 753 9 HOH HOH . G 6 HOH A 54 754 49 HOH HOH . G 6 HOH A 55 755 20 HOH HOH . G 6 HOH A 56 756 33 HOH HOH . G 6 HOH A 57 757 14 HOH HOH . G 6 HOH A 58 758 6 HOH HOH . G 6 HOH A 59 759 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.352 -31.54 -9.581 1 49.74 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.486 -28.779 -13.486 1 46.65 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -22.024 -24.991 -10.491 1 33.92 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.277 -27.664 -6.658 1 48.39 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.126 -31.122 -10.877 1 43.58 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.144 -31.982 -12.016 1 49.79 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -22.899 -31.248 -13.1 1 45.39 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.737 -29.877 -12.67 1 44.15 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -22.832 -31.792 -14.548 1 43 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.391 -33.493 -11.965 1 44.98 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -24.81 -33.642 -12.502 1 50.13 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.234 -35.064 -12.64 1 60.55 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.357 -35.211 -13.204 1 63.83 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.479 -36.015 -12.205 1 58.94 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.253 -27.487 -13.033 1 53.93 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -21.913 -26.309 -13.847 1 51.8 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -21.764 -25.285 -13.011 1 45.92 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.037 -25.77 -11.652 1 47.07 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -21.747 -26.299 -15.395 1 46.15 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.426 -23.805 -13.347 1 48.32 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.435 -23.283 -14.596 1 48.76 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.417 -25.322 -9.195 1 44.68 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.641 -24.427 -8.068 1 51.73 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.986 -25.165 -7.038 1 46.59 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.992 -26.563 -7.428 1 56.95 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.563 -22.855 -7.95 1 35.19 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -23.29 -24.47 -5.696 1 50.03 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -23.878 -25.103 -4.7 1 60.83 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.367 -28.951 -7.127 1 46.97 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.617 -30.126 -6.323 1 46.9 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.651 -31.182 -7.107 1 52.42 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.417 -30.733 -8.457 1 37.07 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.797 -30.117 -4.803 1 51.8 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.9 -32.622 -6.616 1 37.63 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -25.417 -32.8 -6.384 1 43.18 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.789 -34.205 -5.905 1 63.04 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.98 -34.449 -5.532 1 58.85 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.894 -35.096 -5.887 1 57.89 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.883 -29.829 -11.301 1 47.54 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.334 -27.128 -11.712 1 39.62 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.65 -26.622 -8.745 1 43.25 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.244 -29.359 -8.445 1 44.26 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -23.059 -28.114 -10.1 1 51.69 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #