data_6OO9 # _model_server_result.job_id K21uVBBA7SC5WxovRQnvmQ _model_server_result.datetime_utc '2024-11-14 19:41:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6OO9 # _exptl.entry_id 6OO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 495.629 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-(2-{[3-(1H-benzimidazol-2-yl)propyl](methyl)amino}ethyl)-6-fluoro-1-(propan-2-yl)-1,2,3,4-tetrahydronaphthalen-2-yl methoxyacetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OO9 _cell.length_a 77.81 _cell.length_b 102.75 _cell.length_c 127.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -102.75 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -102.75 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.408 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H38 F N3 O3' _chem_comp.formula_weight 495.629 _chem_comp.id MWV _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-(2-{[3-(1H-benzimidazol-2-yl)propyl](methyl)amino}ethyl)-6-fluoro-1-(propan-2-yl)-1,2,3,4-tetrahydronaphthalen-2-yl methoxyacetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 MWV doub 337 n y C19 C18 MWV sing 338 n y C20 C21 MWV sing 339 n y C18 C17 MWV doub 340 n y C21 C22 MWV doub 341 n y O02 C03 MWV sing 342 n n O02 C01 MWV sing 343 n n C03 C04 MWV sing 344 n n C17 C22 MWV sing 345 n y C17 N16 MWV sing 346 n y C22 N23 MWV sing 347 n y C36 C34 MWV sing 348 n n C04 O06 MWV sing 349 n n C04 O05 MWV doub 350 n n N16 C15 MWV sing 351 n y N23 C15 MWV doub 352 n y O06 C07 MWV sing 353 n n C15 C14 MWV sing 354 n n C34 C35 MWV sing 355 n n C34 C33 MWV sing 356 n n C24 C07 MWV sing 357 n n C24 C25 MWV sing 358 n n C07 C33 MWV sing 359 n n C07 C08 MWV sing 360 n n C33 C27 MWV sing 361 n n C14 C13 MWV sing 362 n n C08 C09 MWV sing 363 n n C25 C26 MWV sing 364 n n C09 N10 MWV sing 365 n n C13 C12 MWV sing 366 n n C27 C26 MWV doub 367 n y C27 C28 MWV sing 368 n y C26 C32 MWV sing 369 n y C12 N10 MWV sing 370 n n N10 C11 MWV sing 371 n n C28 C29 MWV doub 372 n y C32 C30 MWV doub 373 n y C29 C30 MWV sing 374 n y C30 F31 MWV sing 375 n n C01 H1 MWV sing 376 n n C01 H2 MWV sing 377 n n C01 H3 MWV sing 378 n n C03 H4 MWV sing 379 n n C03 H5 MWV sing 380 n n C08 H6 MWV sing 381 n n C08 H7 MWV sing 382 n n C09 H8 MWV sing 383 n n C09 H9 MWV sing 384 n n C11 H10 MWV sing 385 n n C11 H11 MWV sing 386 n n C11 H12 MWV sing 387 n n C12 H13 MWV sing 388 n n C12 H14 MWV sing 389 n n C13 H15 MWV sing 390 n n C13 H16 MWV sing 391 n n C14 H17 MWV sing 392 n n C14 H18 MWV sing 393 n n C18 H19 MWV sing 394 n n C19 H20 MWV sing 395 n n C20 H21 MWV sing 396 n n C21 H22 MWV sing 397 n n C24 H23 MWV sing 398 n n C25 H24 MWV sing 399 n n C28 H25 MWV sing 400 n n C29 H26 MWV sing 401 n n C32 H27 MWV sing 402 n n C33 H28 MWV sing 403 n n C34 H29 MWV sing 404 n n C35 H30 MWV sing 405 n n C35 H31 MWV sing 406 n n C35 H32 MWV sing 407 n n C36 H33 MWV sing 408 n n C36 H34 MWV sing 409 n n C36 H35 MWV sing 410 n n N16 H37 MWV sing 411 n n C24 H39 MWV sing 412 n n C25 H40 MWV sing 413 n n # _atom_sites.entry_id 6OO9 _atom_sites.fract_transf_matrix[1][1] 0.012852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 MWV A 1 602 700 MWV MBF . D 4 EDO A 1 603 800 EDO EDO . E 4 EDO A 1 604 801 EDO EDO . F 5 DMS A 1 605 900 DMS DMS . G 6 HOH A 1 701 39 HOH HOH . G 6 HOH A 2 702 21 HOH HOH . G 6 HOH A 3 703 3 HOH HOH . G 6 HOH A 4 704 19 HOH HOH . G 6 HOH A 5 705 16 HOH HOH . G 6 HOH A 6 706 52 HOH HOH . G 6 HOH A 7 707 12 HOH HOH . G 6 HOH A 8 708 31 HOH HOH . G 6 HOH A 9 709 26 HOH HOH . G 6 HOH A 10 710 42 HOH HOH . G 6 HOH A 11 711 4 HOH HOH . G 6 HOH A 12 712 56 HOH HOH . G 6 HOH A 13 713 57 HOH HOH . G 6 HOH A 14 714 18 HOH HOH . G 6 HOH A 15 715 10 HOH HOH . G 6 HOH A 16 716 51 HOH HOH . G 6 HOH A 17 717 37 HOH HOH . G 6 HOH A 18 718 58 HOH HOH . G 6 HOH A 19 719 44 HOH HOH . G 6 HOH A 20 720 41 HOH HOH . G 6 HOH A 21 721 1 HOH HOH . G 6 HOH A 22 722 34 HOH HOH . G 6 HOH A 23 723 35 HOH HOH . G 6 HOH A 24 724 23 HOH HOH . G 6 HOH A 25 725 40 HOH HOH . G 6 HOH A 26 726 7 HOH HOH . G 6 HOH A 27 727 43 HOH HOH . G 6 HOH A 28 728 53 HOH HOH . G 6 HOH A 29 729 48 HOH HOH . G 6 HOH A 30 730 46 HOH HOH . G 6 HOH A 31 731 28 HOH HOH . G 6 HOH A 32 732 54 HOH HOH . G 6 HOH A 33 733 36 HOH HOH . G 6 HOH A 34 734 30 HOH HOH . G 6 HOH A 35 735 29 HOH HOH . G 6 HOH A 36 736 17 HOH HOH . G 6 HOH A 37 737 50 HOH HOH . G 6 HOH A 38 738 24 HOH HOH . G 6 HOH A 39 739 8 HOH HOH . G 6 HOH A 40 740 22 HOH HOH . G 6 HOH A 41 741 32 HOH HOH . G 6 HOH A 42 742 59 HOH HOH . G 6 HOH A 43 743 11 HOH HOH . G 6 HOH A 44 744 25 HOH HOH . G 6 HOH A 45 745 2 HOH HOH . G 6 HOH A 46 746 38 HOH HOH . G 6 HOH A 47 747 27 HOH HOH . G 6 HOH A 48 748 45 HOH HOH . G 6 HOH A 49 749 47 HOH HOH . G 6 HOH A 50 750 5 HOH HOH . G 6 HOH A 51 751 55 HOH HOH . G 6 HOH A 52 752 15 HOH HOH . G 6 HOH A 53 753 9 HOH HOH . G 6 HOH A 54 754 49 HOH HOH . G 6 HOH A 55 755 20 HOH HOH . G 6 HOH A 56 756 33 HOH HOH . G 6 HOH A 57 757 14 HOH HOH . G 6 HOH A 58 758 6 HOH HOH . G 6 HOH A 59 759 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 MWV . . . C 3 -13.317 -33.728 -13.47 1 125.45 ? C01 MWV 602 A 1 HETATM 2 C C03 MWV . . . C 3 -15.454 -32.816 -14.222 1 126.29 ? C03 MWV 602 A 1 HETATM 3 C C04 MWV . . . C 3 -16.059 -32.693 -12.762 1 125.53 ? C04 MWV 602 A 1 HETATM 4 C C07 MWV . . . C 3 -17.945 -33.13 -11.108 1 107.25 ? C07 MWV 602 A 1 HETATM 5 C C08 MWV . . . C 3 -16.999 -33.96 -10.089 1 113.63 ? C08 MWV 602 A 1 HETATM 6 C C09 MWV . . . C 3 -17.635 -35.263 -9.515 1 112.9 ? C09 MWV 602 A 1 HETATM 7 C C11 MWV . . . C 3 -18.008 -36.045 -7.214 1 105.74 ? C11 MWV 602 A 1 HETATM 8 C C12 MWV . . . C 3 -16.255 -37.145 -8.636 1 109.29 ? C12 MWV 602 A 1 HETATM 9 C C13 MWV . . . C 3 -17.144 -38.255 -9.427 1 105.76 ? C13 MWV 602 A 1 HETATM 10 C C14 MWV . . . C 3 -16.386 -39.25 -10.431 1 107.61 ? C14 MWV 602 A 1 HETATM 11 C C15 MWV . . . C 3 -15.998 -38.613 -11.863 1 116.96 ? C15 MWV 602 A 1 HETATM 12 C C17 MWV . . . C 3 -16.062 -37.489 -13.844 1 121.88 ? C17 MWV 602 A 1 HETATM 13 C C18 MWV . . . C 3 -16.379 -36.721 -15.011 1 120.57 ? C18 MWV 602 A 1 HETATM 14 C C19 MWV . . . C 3 -15.437 -36.508 -16.039 1 115 ? C19 MWV 602 A 1 HETATM 15 C C20 MWV . . . C 3 -14.119 -37.062 -15.927 1 115.14 ? C20 MWV 602 A 1 HETATM 16 C C21 MWV . . . C 3 -13.766 -37.82 -14.793 1 114.12 ? C21 MWV 602 A 1 HETATM 17 C C22 MWV . . . C 3 -14.722 -38.046 -13.743 1 118.72 ? C22 MWV 602 A 1 HETATM 18 C C24 MWV . . . C 3 -19.354 -33.788 -11.163 1 99.73 ? C24 MWV 602 A 1 HETATM 19 C C25 MWV . . . C 3 -20.347 -33.417 -9.978 1 91.3 ? C25 MWV 602 A 1 HETATM 20 C C26 MWV . . . C 3 -19.913 -32.406 -8.937 1 77.47 ? C26 MWV 602 A 1 HETATM 21 C C27 MWV . . . C 3 -18.853 -31.506 -9.217 1 84.52 ? C27 MWV 602 A 1 HETATM 22 C C28 MWV . . . C 3 -18.524 -30.591 -8.164 1 74.81 ? C28 MWV 602 A 1 HETATM 23 C C29 MWV . . . C 3 -19.187 -30.54 -6.931 1 73.73 ? C29 MWV 602 A 1 HETATM 24 C C30 MWV . . . C 3 -20.286 -31.419 -6.662 1 89.69 ? C30 MWV 602 A 1 HETATM 25 C C32 MWV . . . C 3 -20.603 -32.364 -7.705 1 75.37 ? C32 MWV 602 A 1 HETATM 26 C C33 MWV . . . C 3 -18.121 -31.591 -10.601 1 91.09 ? C33 MWV 602 A 1 HETATM 27 C C34 MWV . . . C 3 -18.858 -30.673 -11.747 1 81.47 ? C34 MWV 602 A 1 HETATM 28 C C35 MWV . . . C 3 -19.735 -29.562 -11.107 1 85.5 ? C35 MWV 602 A 1 HETATM 29 C C36 MWV . . . C 3 -17.896 -29.995 -12.776 1 74.9 ? C36 MWV 602 A 1 HETATM 30 F F31 MWV . . . C 3 -20.947 -31.376 -5.51 1 110.11 ? F31 MWV 602 A 1 HETATM 31 N N10 MWV . . . C 3 -16.958 -35.815 -8.283 1 110.26 ? N10 MWV 602 A 1 HETATM 32 N N16 MWV . . . C 3 -16.8 -37.86 -12.677 1 121.43 ? N16 MWV 602 A 1 HETATM 33 N N23 MWV . . . C 3 -14.718 -38.746 -12.483 1 119.88 ? N23 MWV 602 A 1 HETATM 34 O O02 MWV . . . C 3 -14.472 -33.873 -14.306 1 126.63 ? O02 MWV 602 A 1 HETATM 35 O O05 MWV . . . C 3 -15.405 -32.178 -11.854 1 128.86 ? O05 MWV 602 A 1 HETATM 36 O O06 MWV . . . C 3 -17.396 -33.138 -12.472 1 116.21 ? O06 MWV 602 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #