data_6OOA # _model_server_result.job_id DlB0QoUxjra1GhFCsyW8sQ _model_server_result.datetime_utc '2024-11-24 03:35:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ooa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6OOA # _exptl.entry_id 6OOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OOA _cell.length_a 76.499 _cell.length_b 101.59 _cell.length_c 125.529 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -76.499 0 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -76.499 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.481 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 6OOA _atom_sites.fract_transf_matrix[1][1] 0.013072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 600 GOL GOL . D 4 MWY A 1 603 700 MWY AZM . E 5 HOH A 1 701 14 HOH HOH . E 5 HOH A 2 702 9 HOH HOH . E 5 HOH A 3 703 8 HOH HOH . E 5 HOH A 4 704 13 HOH HOH . E 5 HOH A 5 705 1 HOH HOH . E 5 HOH A 6 706 11 HOH HOH . E 5 HOH A 7 707 2 HOH HOH . E 5 HOH A 8 708 10 HOH HOH . E 5 HOH A 9 709 4 HOH HOH . E 5 HOH A 10 710 12 HOH HOH . E 5 HOH A 11 711 15 HOH HOH . E 5 HOH A 12 712 7 HOH HOH . E 5 HOH A 13 713 3 HOH HOH . E 5 HOH A 14 714 6 HOH HOH . E 5 HOH A 15 715 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -15.185 -19.731 -9.053 1 59.02 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -16.396 -22.418 -12.953 1 61.46 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -16.682 -26.275 -10.095 1 48.79 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -15.408 -23.695 -6.149 1 52.55 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -15.436 -20.136 -10.345 1 64.27 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -15.367 -19.295 -11.519 1 60.75 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -15.702 -20.059 -12.583 1 60.16 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -16.011 -21.385 -12.121 1 62.4 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -15.776 -19.675 -14.069 1 47.09 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -14.945 -17.799 -11.48 1 46.84 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -13.469 -17.676 -11.859 1 51.18 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -13.107 -16.226 -11.961 1 59.85 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -12.007 -15.916 -12.503 1 70.78 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -13.927 -15.395 -11.504 1 63.42 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -16.568 -23.719 -12.556 1 51.54 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -16.825 -24.89 -13.392 1 60.06 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -16.921 -25.949 -12.546 1 57.78 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -16.687 -25.471 -11.203 1 60.27 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -16.98 -24.836 -14.95 1 56.79 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -17.144 -27.47 -12.781 1 51.67 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -16.862 -28.048 -13.954 1 53.56 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -16.313 -25.925 -8.812 1 58.99 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -16.164 -26.864 -7.714 1 60.37 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -15.818 -26.194 -6.602 1 63.36 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -15.721 -24.777 -6.95 1 55.62 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -16.353 -28.397 -7.793 1 52.45 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -15.594 -26.968 -5.279 1 59.08 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -15.022 -26.433 -4.215 1 69.14 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -15.293 -22.374 -6.6 1 56.25 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -15.042 -21.175 -5.789 1 59.75 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -14.991 -20.097 -6.611 1 60.87 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -15.195 -20.55 -7.955 1 62.42 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -14.865 -21.133 -4.254 1 40.66 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -14.727 -18.622 -6.239 1 56.99 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -13.238 -18.505 -5.899 1 59.27 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -12.97 -17.129 -5.305 1 68.67 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -11.829 -16.877 -4.824 1 55.83 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -13.925 -16.288 -5.299 1 68.82 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -15.836 -21.398 -10.747 1 63.82 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -16.486 -24.108 -11.245 1 59.99 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -16.041 -24.668 -8.309 1 57.66 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -15.386 -21.923 -7.915 1 56.45 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -15.652 -23.097 -9.613 1 57.76 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #