data_6OOB
#
_model_server_result.job_id            LvYyvh1D8u2ApJUXhy1mAQ 
_model_server_result.datetime_utc      '2024-11-14 05:26:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oob 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6OOB 
#
_exptl.entry_id    6OOB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OOB 
_cell.length_a            77.906 
_cell.length_b            102.383 
_cell.length_c            127.464 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OOB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -77.906 0 0 
3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.906 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 D O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6OOB 
_atom_sites.fract_transf_matrix[1][1]    0.012836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 MWS A 1 602 700 MWS BER . 
D 4 HOH A 1 701 28 HOH HOH . 
D 4 HOH A 2 702 15 HOH HOH . 
D 4 HOH A 3 703 19 HOH HOH . 
D 4 HOH A 4 704 22 HOH HOH . 
D 4 HOH A 5 705 36 HOH HOH . 
D 4 HOH A 6 706 9 HOH HOH . 
D 4 HOH A 7 707 20 HOH HOH . 
D 4 HOH A 8 708 27 HOH HOH . 
D 4 HOH A 9 709 24 HOH HOH . 
D 4 HOH A 10 710 33 HOH HOH . 
D 4 HOH A 11 711 6 HOH HOH . 
D 4 HOH A 12 712 12 HOH HOH . 
D 4 HOH A 13 713 38 HOH HOH . 
D 4 HOH A 14 714 7 HOH HOH . 
D 4 HOH A 15 715 2 HOH HOH . 
D 4 HOH A 16 716 1 HOH HOH . 
D 4 HOH A 17 717 39 HOH HOH . 
D 4 HOH A 18 718 30 HOH HOH . 
D 4 HOH A 19 719 35 HOH HOH . 
D 4 HOH A 20 720 3 HOH HOH . 
D 4 HOH A 21 721 34 HOH HOH . 
D 4 HOH A 22 722 29 HOH HOH . 
D 4 HOH A 23 723 16 HOH HOH . 
D 4 HOH A 24 724 13 HOH HOH . 
D 4 HOH A 25 725 8 HOH HOH . 
D 4 HOH A 26 726 25 HOH HOH . 
D 4 HOH A 27 727 31 HOH HOH . 
D 4 HOH A 28 728 17 HOH HOH . 
D 4 HOH A 29 729 14 HOH HOH . 
D 4 HOH A 30 730 11 HOH HOH . 
D 4 HOH A 31 731 26 HOH HOH . 
D 4 HOH A 32 732 32 HOH HOH . 
D 4 HOH A 33 733 37 HOH HOH . 
D 4 HOH A 34 734 23 HOH HOH . 
D 4 HOH A 35 735 4 HOH HOH . 
D 4 HOH A 36 736 21 HOH HOH . 
D 4 HOH A 37 737 10 HOH HOH . 
D 4 HOH A 38 738 18 HOH HOH . 
D 4 HOH A 39 739 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.795 -19.699 -9.508 1 43.35 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -16.595 -22.546 -13.361 1 53.04 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -17.017 -26.402 -10.452 1 41.69 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -16.008 -23.604 -6.61 1 47.11 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.988 -20.132 -10.8 1 41.22 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.978 -19.311 -11.994 1 55.09 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -16.189 -20.072 -13.046 1 49.98 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -16.357 -21.441 -12.569 1 43.49 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -16.253 -19.573 -14.495 1 40.83 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.74 -17.806 -12.038 1 60.75 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -14.23 -17.625 -12.024 1 63.72 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.827 -16.216 -12.342 1 71.21 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -12.812 -16.079 -13.081 1 73.6 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -14.523 -15.271 -11.876 1 69.02 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.796 -23.822 -12.895 1 50.66 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -17.117 -24.956 -13.737 1 43.99 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -17.246 -26.007 -12.938 1 48.7 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -17 -25.578 -11.569 1 53.41 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -17.277 -24.881 -15.276 1 53.25 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -17.569 -27.468 -13.314 1 49.46 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -17.599 -27.896 -14.582 1 49.18 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.698 -25.965 -9.198 1 48.87 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.471 -26.835 -8.076 1 52.88 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -16.174 -26.097 -7.009 1 48.92 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -16.215 -24.691 -7.415 1 54.99 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.528 -28.37 -8.1 1 49.4 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.869 -26.75 -5.64 1 45.4 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.294 -26.105 -4.624 1 86.84 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.903 -22.319 -7.084 1 59.41 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.639 -21.159 -6.228 1 50.67 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -15.578 -20.101 -7.031 1 46.69 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.779 -20.544 -8.41 1 48.32 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -15.503 -21.167 -4.69 1 60.79 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -15.319 -18.64 -6.608 1 52.43 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.872 -18.515 -6.132 1 55.35 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -13.636 -17.094 -5.724 1 73.03 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -12.538 -16.799 -5.184 1 57.28 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -14.562 -16.27 -5.946 1 73.67 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -16.221 -21.438 -11.203 1 50.41 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.71 -24.223 -11.578 1 48.36 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -16.543 -24.627 -8.781 1 41.56 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.974 -21.926 -8.422 1 40.24 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -16.143 -23.048 -10.081 1 55.56 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#