data_6OOG # _model_server_result.job_id fB5oEQtU8dv3YvrUQPP0Kg _model_server_result.datetime_utc '2024-12-26 19:57:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6OOG # _exptl.entry_id 6OOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OOG _cell.length_a 66.37 _cell.length_b 66.37 _cell.length_c 155.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 54 A GLN 51 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc2 A O ASP 55 A ASP 52 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc3 A O ALA 57 A ALA 54 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc4 C NA NA . A NA 302 1_555 D O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc5 C NA NA . A NA 302 1_555 D O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OOG _atom_sites.fract_transf_matrix[1][1] 0.015067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGA A 1 301 1 PGA PGA . C 3 NA A 1 302 1 NA NA . D 4 HOH A 1 401 184 HOH HOH . D 4 HOH A 2 402 155 HOH HOH . D 4 HOH A 3 403 12 HOH HOH . D 4 HOH A 4 404 66 HOH HOH . D 4 HOH A 5 405 88 HOH HOH . D 4 HOH A 6 406 105 HOH HOH . D 4 HOH A 7 407 86 HOH HOH . D 4 HOH A 8 408 82 HOH HOH . D 4 HOH A 9 409 25 HOH HOH . D 4 HOH A 10 410 99 HOH HOH . D 4 HOH A 11 411 119 HOH HOH . D 4 HOH A 12 412 24 HOH HOH . D 4 HOH A 13 413 114 HOH HOH . D 4 HOH A 14 414 124 HOH HOH . D 4 HOH A 15 415 148 HOH HOH . D 4 HOH A 16 416 87 HOH HOH . D 4 HOH A 17 417 9 HOH HOH . D 4 HOH A 18 418 4 HOH HOH . D 4 HOH A 19 419 40 HOH HOH . D 4 HOH A 20 420 103 HOH HOH . D 4 HOH A 21 421 37 HOH HOH . D 4 HOH A 22 422 74 HOH HOH . D 4 HOH A 23 423 1 HOH HOH . D 4 HOH A 24 424 84 HOH HOH . D 4 HOH A 25 425 136 HOH HOH . D 4 HOH A 26 426 182 HOH HOH . D 4 HOH A 27 427 30 HOH HOH . D 4 HOH A 28 428 20 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 2 HOH HOH . D 4 HOH A 31 431 16 HOH HOH . D 4 HOH A 32 432 71 HOH HOH . D 4 HOH A 33 433 3 HOH HOH . D 4 HOH A 34 434 10 HOH HOH . D 4 HOH A 35 435 115 HOH HOH . D 4 HOH A 36 436 104 HOH HOH . D 4 HOH A 37 437 21 HOH HOH . D 4 HOH A 38 438 11 HOH HOH . D 4 HOH A 39 439 180 HOH HOH . D 4 HOH A 40 440 18 HOH HOH . D 4 HOH A 41 441 59 HOH HOH . D 4 HOH A 42 442 187 HOH HOH . D 4 HOH A 43 443 127 HOH HOH . D 4 HOH A 44 444 39 HOH HOH . D 4 HOH A 45 445 45 HOH HOH . D 4 HOH A 46 446 34 HOH HOH . D 4 HOH A 47 447 44 HOH HOH . D 4 HOH A 48 448 72 HOH HOH . D 4 HOH A 49 449 22 HOH HOH . D 4 HOH A 50 450 47 HOH HOH . D 4 HOH A 51 451 32 HOH HOH . D 4 HOH A 52 452 131 HOH HOH . D 4 HOH A 53 453 49 HOH HOH . D 4 HOH A 54 454 122 HOH HOH . D 4 HOH A 55 455 46 HOH HOH . D 4 HOH A 56 456 8 HOH HOH . D 4 HOH A 57 457 79 HOH HOH . D 4 HOH A 58 458 189 HOH HOH . D 4 HOH A 59 459 13 HOH HOH . D 4 HOH A 60 460 176 HOH HOH . D 4 HOH A 61 461 188 HOH HOH . D 4 HOH A 62 462 70 HOH HOH . D 4 HOH A 63 463 146 HOH HOH . D 4 HOH A 64 464 27 HOH HOH . D 4 HOH A 65 465 38 HOH HOH . D 4 HOH A 66 466 144 HOH HOH . D 4 HOH A 67 467 73 HOH HOH . D 4 HOH A 68 468 17 HOH HOH . D 4 HOH A 69 469 93 HOH HOH . D 4 HOH A 70 470 143 HOH HOH . D 4 HOH A 71 471 48 HOH HOH . D 4 HOH A 72 472 137 HOH HOH . D 4 HOH A 73 473 97 HOH HOH . D 4 HOH A 74 474 35 HOH HOH . D 4 HOH A 75 475 150 HOH HOH . D 4 HOH A 76 476 7 HOH HOH . D 4 HOH A 77 477 123 HOH HOH . D 4 HOH A 78 478 117 HOH HOH . D 4 HOH A 79 479 53 HOH HOH . D 4 HOH A 80 480 15 HOH HOH . D 4 HOH A 81 481 158 HOH HOH . D 4 HOH A 82 482 56 HOH HOH . D 4 HOH A 83 483 19 HOH HOH . D 4 HOH A 84 484 126 HOH HOH . D 4 HOH A 85 485 42 HOH HOH . D 4 HOH A 86 486 80 HOH HOH . D 4 HOH A 87 487 90 HOH HOH . D 4 HOH A 88 488 141 HOH HOH . D 4 HOH A 89 489 163 HOH HOH . D 4 HOH A 90 490 160 HOH HOH . D 4 HOH A 91 491 23 HOH HOH . D 4 HOH A 92 492 76 HOH HOH . D 4 HOH A 93 493 89 HOH HOH . D 4 HOH A 94 494 60 HOH HOH . D 4 HOH A 95 495 125 HOH HOH . D 4 HOH A 96 496 29 HOH HOH . D 4 HOH A 97 497 102 HOH HOH . D 4 HOH A 98 498 98 HOH HOH . D 4 HOH A 99 499 107 HOH HOH . D 4 HOH A 100 500 94 HOH HOH . D 4 HOH A 101 501 26 HOH HOH . D 4 HOH A 102 502 52 HOH HOH . D 4 HOH A 103 503 129 HOH HOH . D 4 HOH A 104 504 173 HOH HOH . D 4 HOH A 105 505 142 HOH HOH . D 4 HOH A 106 506 6 HOH HOH . D 4 HOH A 107 507 51 HOH HOH . D 4 HOH A 108 508 178 HOH HOH . D 4 HOH A 109 509 164 HOH HOH . D 4 HOH A 110 510 81 HOH HOH . D 4 HOH A 111 511 85 HOH HOH . D 4 HOH A 112 512 139 HOH HOH . D 4 HOH A 113 513 183 HOH HOH . D 4 HOH A 114 514 55 HOH HOH . D 4 HOH A 115 515 77 HOH HOH . D 4 HOH A 116 516 68 HOH HOH . D 4 HOH A 117 517 100 HOH HOH . D 4 HOH A 118 518 63 HOH HOH . D 4 HOH A 119 519 96 HOH HOH . D 4 HOH A 120 520 135 HOH HOH . D 4 HOH A 121 521 41 HOH HOH . D 4 HOH A 122 522 138 HOH HOH . D 4 HOH A 123 523 133 HOH HOH . D 4 HOH A 124 524 154 HOH HOH . D 4 HOH A 125 525 128 HOH HOH . D 4 HOH A 126 526 5 HOH HOH . D 4 HOH A 127 527 57 HOH HOH . D 4 HOH A 128 528 110 HOH HOH . D 4 HOH A 129 529 83 HOH HOH . D 4 HOH A 130 530 62 HOH HOH . D 4 HOH A 131 531 58 HOH HOH . D 4 HOH A 132 532 169 HOH HOH . D 4 HOH A 133 533 156 HOH HOH . D 4 HOH A 134 534 145 HOH HOH . D 4 HOH A 135 535 28 HOH HOH . D 4 HOH A 136 536 67 HOH HOH . D 4 HOH A 137 537 111 HOH HOH . D 4 HOH A 138 538 54 HOH HOH . D 4 HOH A 139 539 121 HOH HOH . D 4 HOH A 140 540 106 HOH HOH . D 4 HOH A 141 541 179 HOH HOH . D 4 HOH A 142 542 118 HOH HOH . D 4 HOH A 143 543 64 HOH HOH . D 4 HOH A 144 544 177 HOH HOH . D 4 HOH A 145 545 69 HOH HOH . D 4 HOH A 146 546 108 HOH HOH . D 4 HOH A 147 547 186 HOH HOH . D 4 HOH A 148 548 109 HOH HOH . D 4 HOH A 149 549 161 HOH HOH . D 4 HOH A 150 550 112 HOH HOH . D 4 HOH A 151 551 167 HOH HOH . D 4 HOH A 152 552 168 HOH HOH . D 4 HOH A 153 553 159 HOH HOH . D 4 HOH A 154 554 152 HOH HOH . D 4 HOH A 155 555 171 HOH HOH . D 4 HOH A 156 556 170 HOH HOH . D 4 HOH A 157 557 92 HOH HOH . D 4 HOH A 158 558 101 HOH HOH . D 4 HOH A 159 559 50 HOH HOH . D 4 HOH A 160 560 116 HOH HOH . D 4 HOH A 161 561 175 HOH HOH . D 4 HOH A 162 562 166 HOH HOH . D 4 HOH A 163 563 65 HOH HOH . D 4 HOH A 164 564 185 HOH HOH . D 4 HOH A 165 565 120 HOH HOH . D 4 HOH A 166 566 165 HOH HOH . D 4 HOH A 167 567 147 HOH HOH . D 4 HOH A 168 568 61 HOH HOH . D 4 HOH A 169 569 140 HOH HOH . D 4 HOH A 170 570 78 HOH HOH . D 4 HOH A 171 571 134 HOH HOH . D 4 HOH A 172 572 181 HOH HOH . D 4 HOH A 173 573 153 HOH HOH . D 4 HOH A 174 574 91 HOH HOH . D 4 HOH A 175 575 33 HOH HOH . D 4 HOH A 176 576 132 HOH HOH . D 4 HOH A 177 577 75 HOH HOH . D 4 HOH A 178 578 174 HOH HOH . D 4 HOH A 179 579 14 HOH HOH . D 4 HOH A 180 580 130 HOH HOH . D 4 HOH A 181 581 43 HOH HOH . D 4 HOH A 182 582 172 HOH HOH . D 4 HOH A 183 583 157 HOH HOH . D 4 HOH A 184 584 95 HOH HOH . D 4 HOH A 185 585 36 HOH HOH . D 4 HOH A 186 586 162 HOH HOH . D 4 HOH A 187 587 113 HOH HOH . D 4 HOH A 188 588 149 HOH HOH . D 4 HOH A 189 589 151 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.702 _atom_site.Cartn_y 6.537 _atom_site.Cartn_z 7.698 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #